Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47311 * 239.99979 * 3 2 1 5 5 H 1.48496 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46868 * 120.00030 * 3 2 1 7 7 C 1.37880 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53516 * 114.17391 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93208 * 220.32703 * 10 9 7 12 12 C 1.37995 * 111.00010 * 138.70151 * 11 10 9 13 13 N 1.32875 * 120.04546 * 359.72020 * 12 11 10 14 14 C 1.32842 * 119.82619 * 179.75104 * 13 12 11 15 15 N 1.37995 * 120.04135 * 180.25508 * 14 13 12 16 16 N 1.33121 * 119.91193 * 0.52453 * 14 13 12 17 17 C 1.32143 * 120.08579 * 359.74674 * 16 14 13 18 18 C 1.50702 * 119.91191 * 179.97438 * 17 16 14 19 19 F 1.39900 * 109.47179 * 119.97762 * 18 17 16 20 20 F 1.39900 * 109.47107 * 239.98398 * 18 17 16 21 21 C 1.53004 * 109.47043 * 359.97438 * 18 17 16 22 22 F 1.39905 * 109.47006 * 59.99772 * 21 18 17 23 23 F 1.39897 * 109.47414 * 179.97438 * 21 18 17 24 24 F 1.39908 * 109.47183 * 300.00108 * 21 18 17 25 25 N 1.32163 * 120.17606 * 359.97438 * 17 16 14 26 26 C 1.47473 * 87.83906 * 27.00843 * 11 10 9 27 27 H 0.97002 * 120.00435 * 359.97438 * 1 2 3 28 28 H 1.09005 * 113.25672 * 312.94789 * 9 7 2 29 29 H 1.08997 * 113.47852 * 105.55340 * 10 9 7 30 30 H 1.08999 * 113.52569 * 335.09920 * 10 9 7 31 31 H 0.97005 * 119.99690 * 180.27122 * 15 14 13 32 32 H 0.96995 * 120.00481 * 0.26895 * 15 14 13 33 33 H 1.09001 * 113.47733 * 87.75523 * 26 11 10 34 34 H 1.08998 * 113.48147 * 218.22732 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.1494 -3.7439 0.0005 11 7 1.2073 -4.3584 -0.9533 12 6 1.8820 -5.0422 -1.9439 13 7 3.2104 -5.0727 -1.9448 14 6 3.8554 -5.7365 -2.8977 15 7 5.2348 -5.7754 -2.8999 16 7 3.1695 -6.3594 -3.8535 17 6 1.8486 -6.3224 -3.8523 18 6 1.0760 -7.0285 -4.9365 19 9 0.2452 -7.9966 -4.3622 20 9 0.2966 -6.0996 -5.6343 21 6 2.0526 -7.7025 -5.9024 22 9 2.8322 -8.6314 -5.2046 23 9 1.3355 -8.3586 -6.9086 24 9 2.8834 -6.7344 -6.4767 25 7 1.2032 -5.6676 -2.9028 26 6 0.8553 -2.9967 -1.3968 27 1 -0.4851 0.8400 0.0004 28 1 0.4445 -2.5305 0.7333 29 1 2.1863 -4.2529 0.9637 30 1 3.1391 -3.5661 -0.4203 31 1 5.7053 -6.2570 -3.5983 32 1 5.7340 -5.3213 -2.2033 33 1 1.4993 -2.6185 -2.1908 34 1 -0.2048 -2.8724 -1.6179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335533789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -122.036877 kcal Electronic energy + Delta-G solvation = -30278.688779 eV Core-core repulsion = 25084.169383 eV Total energy + Delta-G solvation = -5194.519396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.90938 -50.60100 -49.49063 -49.06937 -48.53670 -43.31433 -40.98036 -37.23957 -35.83192 -34.49137 -33.13494 -31.59613 -30.62073 -27.36012 -26.98242 -26.18056 -24.49545 -23.65856 -21.27602 -20.92827 -20.40005 -20.36254 -19.69985 -19.39008 -18.77757 -18.64789 -17.88065 -17.35081 -17.11285 -16.89249 -16.35185 -16.29166 -16.10288 -15.83536 -15.78516 -15.72010 -15.71579 -15.38897 -15.26795 -15.11511 -15.07860 -14.96337 -14.64197 -14.08373 -13.65852 -13.34647 -13.25670 -13.05446 -12.81237 -12.47857 -12.25683 -11.89268 -11.58527 -11.21763 -11.16087 -10.95671 -10.56412 -10.33121 -10.14151 -8.17423 -6.29336 -0.87772 -0.30925 0.26409 1.01287 1.46649 1.47163 1.55073 1.59800 1.81039 1.83862 2.03746 2.31020 2.39593 2.44901 2.78231 2.99814 3.12115 3.14634 3.32861 3.90235 4.10640 4.29886 4.41494 4.65537 4.79742 4.83215 4.94359 5.01933 5.18649 5.57342 5.75192 5.83000 5.92722 6.21956 6.33638 6.79740 6.98868 7.40234 8.92132 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003212 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.816048 B = 8714.372471 C = 9090.014302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.034 3.966 10 C 0.028 3.972 11 N -0.430 5.430 12 C 0.553 3.447 13 N -0.613 5.613 14 C 0.616 3.384 15 N -0.765 5.765 16 N -0.589 5.589 17 C 0.340 3.660 18 C 0.349 3.651 19 F -0.141 7.141 20 F -0.143 7.143 21 C 0.463 3.537 22 F -0.142 7.142 23 F -0.151 7.151 24 F -0.144 7.144 25 N -0.577 5.577 26 C 0.047 3.953 27 H 0.265 0.735 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.434 0.566 32 H 0.434 0.566 33 H 0.054 0.946 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -15.405 -11.232 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.014 3.986 10 C -0.099 4.099 11 N -0.151 5.151 12 C 0.189 3.811 13 N -0.348 5.348 14 C 0.248 3.752 15 N -0.316 5.316 16 N -0.322 5.322 17 C 0.055 3.945 18 C 0.307 3.693 19 F -0.121 7.121 20 F -0.123 7.123 21 C 0.407 3.593 22 F -0.123 7.123 23 F -0.132 7.132 24 F -0.125 7.125 25 N -0.306 5.306 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.270 0.730 32 H 0.269 0.731 33 H 0.072 0.928 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.017 -15.745 -10.983 21.210 hybrid contribution 0.687 1.109 -0.358 1.353 sum 9.705 -14.636 -11.341 20.905 Atomic orbital electron populations 1.70063 1.07500 1.27966 1.49964 1.25804 0.95561 1.02677 0.93988 0.85615 0.78367 0.78669 0.79065 1.19659 1.21254 1.19052 1.21228 0.93254 0.90584 1.51651 0.91540 1.20105 0.94714 0.92325 0.91442 1.24065 0.96577 0.94193 0.95109 1.65874 1.27171 1.14687 1.07413 1.22063 0.84570 0.87423 0.87013 1.68765 1.09828 1.26398 1.29789 1.19419 0.89214 0.83291 0.83301 1.41735 0.98310 1.57442 1.34131 1.68114 1.06972 1.28003 1.29129 1.22460 0.87936 0.91582 0.92546 1.19593 0.84165 0.80054 0.85464 1.93225 1.72362 1.61601 1.84921 1.93230 1.75347 1.65437 1.78291 1.19748 0.80845 0.78367 0.80370 1.93304 1.75104 1.65558 1.78366 1.93316 1.77437 1.81302 1.61167 1.93309 1.72220 1.62251 1.84693 1.68345 1.41521 1.14959 1.05787 1.23986 1.00691 0.81349 1.01956 0.92616 0.93329 0.89266 0.88351 0.73044 0.73127 0.92781 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.21 13.26 21.45 0.28 -50.93 16 2 C 0.02 1.06 5.46 84.66 0.46 1.53 16 3 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.53 -27.09 8.82 25.60 0.23 -26.86 16 8 H 0.07 3.27 7.81 -2.91 -0.02 3.24 16 9 C 0.03 1.61 3.77 -11.19 -0.04 1.57 16 10 C 0.03 1.12 6.95 83.58 0.58 1.70 16 11 N -0.43 -17.87 6.50 -738.41 -4.80 -22.67 16 12 C 0.55 21.30 6.82 261.25 1.78 23.08 16 13 N -0.61 -20.40 8.38 -200.59 -1.68 -22.08 16 14 C 0.62 16.64 8.76 261.25 2.29 18.93 16 15 N -0.76 -12.03 9.05 -59.46 -0.54 -12.57 16 16 N -0.59 -16.42 7.93 -190.35 -1.51 -17.93 16 17 C 0.34 10.76 6.79 138.54 0.94 11.70 16 18 C 0.35 9.40 1.82 29.85 0.05 9.46 16 19 F -0.14 -3.77 17.01 44.97 0.76 -3.01 16 20 F -0.14 -3.97 17.01 44.97 0.76 -3.20 16 21 C 0.46 10.29 2.37 71.98 0.17 10.46 16 22 F -0.14 -3.05 16.25 44.97 0.73 -2.32 16 23 F -0.15 -3.04 17.28 44.97 0.78 -2.26 16 24 F -0.14 -3.19 16.26 44.97 0.73 -2.46 16 25 N -0.58 -21.71 10.46 -190.35 -1.99 -23.70 16 26 C 0.05 2.14 7.23 83.58 0.60 2.74 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.05 2.55 8.11 -2.38 -0.02 2.53 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.10 3.83 6.61 -2.39 -0.02 3.81 16 31 H 0.43 4.42 8.95 -92.70 -0.83 3.59 16 32 H 0.43 5.31 8.95 -92.71 -0.83 4.48 16 33 H 0.05 2.52 7.85 -2.39 -0.02 2.50 16 34 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -60.34 321.90 2.20 -58.14 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -0.42 Total: 7.62 kcal Atomic # 6 Polarization: 47.22 SS G_CDS: 7.07 Total: 54.29 kcal Atomic # 7 Polarization: -139.64 SS G_CDS: -10.24 Total: -149.87 kcal Atomic # 9 Polarization: -17.02 SS G_CDS: 3.77 Total: -13.25 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -60.34 2.20 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335533789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.899 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds