Wall clock time and date at job start Tue Mar 31 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00045 * 2 1 4 4 H 1.09002 * 109.46965 * 244.99672 * 3 2 1 5 5 C 1.53005 * 109.47399 * 124.99887 * 3 2 1 6 6 C 1.52998 * 109.47351 * 174.99760 * 5 3 2 7 7 C 1.50693 * 109.47029 * 179.97438 * 6 5 3 8 8 O 1.20828 * 120.00219 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00186 * 179.72836 * 7 6 5 10 10 N 1.46497 * 109.47113 * 4.99670 * 3 2 1 11 11 S 1.65603 * 119.99985 * 264.99858 * 10 3 2 12 12 O 1.42100 * 106.40366 * 178.54264 * 11 10 3 13 13 O 1.42095 * 106.40437 * 311.46168 * 11 10 3 14 14 C 1.76193 * 107.21743 * 65.00288 * 11 10 3 15 15 C 1.38637 * 119.74876 * 269.72949 * 14 11 10 16 16 C 1.37626 * 120.24720 * 179.72046 * 15 14 11 17 17 C 1.40713 * 119.74323 * 0.56856 * 16 15 14 18 18 C 1.41396 * 120.24551 * 179.68267 * 17 16 15 19 19 H 1.07997 * 119.99735 * 24.40754 * 18 17 16 20 20 C 1.39944 * 120.00110 * 204.41310 * 18 17 16 21 21 N 1.30817 * 119.99979 * 17.85415 * 20 18 17 22 22 Si 1.86802 * 119.99905 * 197.85369 * 20 18 17 23 23 H 1.48495 * 109.47120 * 59.99494 * 22 20 18 24 24 H 1.48497 * 109.47154 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47160 * 300.00008 * 22 20 18 26 26 C 1.40720 * 119.51451 * 359.70307 * 17 16 15 27 27 C 1.37617 * 119.74309 * 0.02562 * 26 17 16 28 28 H 1.07999 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00184 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99722 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46916 * 54.99682 * 5 3 2 32 32 H 1.09009 * 109.46530 * 295.00117 * 5 3 2 33 33 H 1.09003 * 109.46871 * 59.99645 * 6 5 3 34 34 H 1.08998 * 109.47123 * 300.00276 * 6 5 3 35 35 H 0.96696 * 117.00428 * 180.02562 * 9 7 6 36 36 H 0.96995 * 120.00162 * 85.00396 * 10 3 2 37 37 H 1.07995 * 119.87563 * 359.97438 * 15 14 11 38 38 H 1.07994 * 120.12739 * 180.27529 * 16 15 14 39 39 H 0.97004 * 120.00239 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.12917 * 179.97438 * 26 17 16 41 41 H 1.07993 * 119.87830 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6214 1.4025 -0.9314 5 6 3.0351 1.3331 1.1817 6 6 3.8876 2.6016 1.1110 7 6 4.8441 2.6295 2.2752 8 8 4.8442 1.7271 3.0787 9 8 5.7000 3.6538 2.4163 10 7 1.1161 2.4159 0.1203 11 16 0.5678 3.1874 -1.2386 12 8 -0.3487 4.1787 -0.7951 13 8 1.7154 3.4848 -2.0219 14 6 -0.3731 2.0163 -2.1593 15 6 0.2525 1.2288 -3.1135 16 6 -0.4715 0.3068 -3.8345 17 6 -1.8539 0.1735 -3.6085 18 6 -2.6092 -0.7657 -4.3480 19 1 -2.1243 -1.6290 -4.7791 20 6 -3.9849 -0.5764 -4.5212 21 7 -4.5135 0.6030 -4.3190 22 14 -5.0664 -2.0079 -5.0413 23 1 -4.9779 -3.0891 -4.0273 24 1 -6.4744 -1.5493 -5.1537 25 1 -4.6068 -2.5235 -6.3560 26 6 -2.4794 0.9821 -2.6414 27 6 -1.7346 1.8934 -1.9283 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.6827 0.4573 1.1404 32 1 2.4721 1.3251 2.1151 33 1 3.2400 3.4774 1.1522 34 1 4.4505 2.6096 0.1776 35 1 6.2944 3.6274 3.1785 36 1 0.8101 2.6997 0.9959 37 1 1.3127 1.3365 -3.2888 38 1 0.0187 -0.3087 -4.5742 39 1 -5.4671 0.7342 -4.4387 40 1 -3.5399 0.8883 -2.4602 41 1 -2.2125 2.5153 -1.1859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335819181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:00 Heat of formation + Delta-G solvation = -138.564988 kcal Electronic energy + Delta-G solvation = -27310.791283 eV Core-core repulsion = 23282.499894 eV Total energy + Delta-G solvation = -4028.291389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45695 -37.86557 -37.45760 -36.49671 -36.29515 -35.17949 -34.07344 -32.61031 -31.29240 -30.24604 -29.47446 -27.22995 -25.82386 -23.16140 -21.51404 -21.19461 -20.82254 -19.60294 -18.91482 -18.30887 -17.63247 -17.25843 -16.91672 -16.43932 -16.26230 -15.67552 -15.44422 -15.11808 -14.41724 -14.14634 -13.87695 -13.51964 -13.41972 -13.21502 -12.88088 -12.49674 -12.41772 -12.20999 -11.93087 -11.75038 -11.71201 -11.50038 -11.44202 -11.37133 -11.33584 -11.25760 -11.08817 -10.92716 -10.81267 -10.71197 -10.46990 -9.81366 -9.70301 -9.49858 -9.19045 -8.99125 -7.92505 -7.69234 -7.14716 -4.80562 1.19899 2.00497 2.25466 2.62010 2.86701 2.88389 2.89543 2.92676 2.93398 3.63760 3.67202 4.22581 4.47399 4.58267 4.82774 4.84709 5.09000 5.21797 5.34607 5.36347 5.40592 5.51011 5.56622 5.69664 5.98640 6.05603 6.10504 6.18407 6.28677 6.36331 6.67605 6.69980 6.90021 6.96146 7.04167 7.09480 7.28083 7.33811 7.42920 7.62985 7.67477 7.76457 7.96748 8.31432 8.51127 8.64857 9.76493 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002891 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.299380 B = 9684.173797 C =10250.297186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.202 4.202 3 C 0.188 3.812 4 H 0.100 0.900 5 C -0.105 4.105 6 C -0.119 4.119 7 C 0.479 3.521 8 O -0.519 6.519 9 O -0.519 6.519 10 N -1.123 6.123 11 S 2.688 3.312 12 O -0.984 6.984 13 O -0.984 6.984 14 C -0.782 4.782 15 C 0.008 3.992 16 C -0.237 4.237 17 C 0.143 3.857 18 C -0.437 4.437 19 H 0.086 0.914 20 C 0.073 3.927 21 N -0.765 5.765 22 Si 0.916 3.084 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.261 1.261 26 C -0.181 4.181 27 C -0.014 4.014 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.408 0.592 36 H 0.411 0.589 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.290 0.710 40 H 0.121 0.879 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.245 -0.026 9.301 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.222 4.222 3 C 0.081 3.919 4 H 0.118 0.882 5 C -0.144 4.144 6 C -0.157 4.157 7 C 0.322 3.678 8 O -0.407 6.407 9 O -0.330 6.330 10 N -0.879 5.879 11 S 2.787 3.213 12 O -0.975 6.975 13 O -0.975 6.975 14 C -0.879 4.879 15 C -0.012 4.012 16 C -0.258 4.258 17 C 0.139 3.861 18 C -0.464 4.464 19 H 0.104 0.896 20 C -0.150 4.150 21 N -0.387 5.387 22 Si 0.739 3.261 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.201 4.201 27 C -0.034 4.034 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.266 0.734 36 H 0.244 0.756 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.026 0.754 8.796 13.359 hybrid contribution -0.710 -1.175 0.366 1.421 sum 9.316 -0.421 9.162 13.073 Atomic orbital electron populations 1.23983 0.95946 1.02473 0.95452 1.23068 0.96514 0.97359 1.05241 1.19659 0.88632 0.84451 0.99191 0.88220 1.21649 0.97096 0.96450 0.99168 1.21482 0.96464 1.02261 0.95447 1.23691 0.79226 0.78357 0.86478 1.90724 1.68694 1.37224 1.44083 1.84574 1.48680 1.47789 1.51983 1.55950 1.59442 1.48313 1.24178 1.01404 0.73344 0.73938 0.72647 1.93507 1.64624 1.57525 1.81820 1.93480 1.50998 1.83791 1.69199 1.29006 1.06781 1.29255 1.22853 1.20076 0.97039 0.92121 0.91959 1.20970 0.95292 1.04301 1.05203 1.17811 0.91265 0.88956 0.88063 1.19904 0.92413 1.07239 1.26823 0.89583 1.26125 0.99017 0.96677 0.93150 1.69812 1.14791 1.22200 1.31894 0.86216 0.78334 0.81189 0.80327 1.18402 1.19927 1.18581 1.21303 0.99810 1.00319 0.98683 1.20187 0.91383 0.95192 0.96663 0.87790 0.88723 0.86856 0.89562 0.90179 0.87288 0.86921 0.73381 0.75629 0.88105 0.88440 0.89901 0.86162 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 12.41 29.01 0.36 -1.71 16 2 C -0.20 -2.56 9.52 -36.03 -0.34 -2.90 16 3 C 0.19 2.23 2.84 -69.08 -0.20 2.03 16 4 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 5 C -0.10 -1.02 4.09 -26.73 -0.11 -1.13 16 6 C -0.12 -1.11 5.70 -27.89 -0.16 -1.27 16 7 C 0.48 4.78 8.33 36.00 0.30 5.08 16 8 O -0.52 -6.58 16.74 -18.75 -0.31 -6.90 16 9 O -0.52 -4.13 13.42 -39.25 -0.53 -4.66 16 10 N -1.12 -14.68 3.43 -5.88 -0.02 -14.70 16 11 S 2.69 48.01 5.60 -107.50 -0.60 47.41 16 12 O -0.98 -20.14 17.26 -57.18 -0.99 -21.13 16 13 O -0.98 -19.29 16.59 -57.18 -0.95 -20.23 16 14 C -0.78 -15.94 3.71 -39.29 -0.15 -16.08 16 15 C 0.01 0.17 9.43 -39.66 -0.37 -0.20 16 16 C -0.24 -5.32 9.80 -38.87 -0.38 -5.70 16 17 C 0.14 3.45 5.58 -106.82 -0.60 2.86 16 18 C -0.44 -10.39 9.05 -37.74 -0.34 -10.73 16 19 H 0.09 1.94 7.91 -52.49 -0.42 1.52 16 20 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 21 N -0.76 -18.01 10.95 55.55 0.61 -17.41 16 22 Si 0.92 16.75 29.60 -169.99 -5.03 11.72 16 23 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 24 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 26 C -0.18 -4.30 8.70 -38.87 -0.34 -4.64 16 27 C -0.01 -0.30 8.14 -39.66 -0.32 -0.63 16 28 H 0.10 1.61 4.39 -52.49 -0.23 1.38 16 29 H 0.09 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.08 0.79 8.10 -51.92 -0.42 0.37 16 33 H 0.11 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 1.52 9.10 45.56 0.41 1.93 16 36 H 0.41 4.45 8.84 -34.47 -0.30 4.15 16 37 H 0.10 1.90 7.59 -52.49 -0.40 1.50 16 38 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 40 H 0.12 2.94 6.15 -52.49 -0.32 2.62 16 41 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -31.19 360.98 -9.23 -40.42 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.11 Total: 13.52 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -2.74 Total: -33.47 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.59 Total: -32.11 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.78 Total: -52.92 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -0.60 Total: 47.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.19 -9.23 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335819181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.149 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds