Wall clock time and date at job start Tue Mar 31 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00045 * 2 1 4 4 H 1.09002 * 109.46965 * 244.99672 * 3 2 1 5 5 C 1.53005 * 109.47399 * 124.99887 * 3 2 1 6 6 C 1.52998 * 109.47351 * 174.99760 * 5 3 2 7 7 C 1.50693 * 109.47029 * 179.97438 * 6 5 3 8 8 O 1.20828 * 120.00219 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00186 * 179.72836 * 7 6 5 10 10 N 1.46497 * 109.47113 * 4.99670 * 3 2 1 11 11 S 1.65603 * 119.99985 * 264.99858 * 10 3 2 12 12 O 1.42100 * 106.40366 * 178.54264 * 11 10 3 13 13 O 1.42095 * 106.40437 * 311.46168 * 11 10 3 14 14 C 1.76193 * 107.21743 * 65.00288 * 11 10 3 15 15 C 1.38637 * 119.74876 * 269.72949 * 14 11 10 16 16 C 1.37626 * 120.24720 * 179.72046 * 15 14 11 17 17 C 1.40713 * 119.74323 * 0.56856 * 16 15 14 18 18 C 1.41396 * 120.24551 * 179.68267 * 17 16 15 19 19 H 1.07997 * 119.99735 * 24.40754 * 18 17 16 20 20 C 1.39944 * 120.00110 * 204.41310 * 18 17 16 21 21 N 1.30817 * 119.99979 * 17.85415 * 20 18 17 22 22 Si 1.86802 * 119.99905 * 197.85369 * 20 18 17 23 23 H 1.48495 * 109.47120 * 59.99494 * 22 20 18 24 24 H 1.48497 * 109.47154 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47160 * 300.00008 * 22 20 18 26 26 C 1.40720 * 119.51451 * 359.70307 * 17 16 15 27 27 C 1.37617 * 119.74309 * 0.02562 * 26 17 16 28 28 H 1.07999 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00184 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99722 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46916 * 54.99682 * 5 3 2 32 32 H 1.09009 * 109.46530 * 295.00117 * 5 3 2 33 33 H 1.09003 * 109.46871 * 59.99645 * 6 5 3 34 34 H 1.08998 * 109.47123 * 300.00276 * 6 5 3 35 35 H 0.96696 * 117.00428 * 180.02562 * 9 7 6 36 36 H 0.96995 * 120.00162 * 85.00396 * 10 3 2 37 37 H 1.07995 * 119.87563 * 359.97438 * 15 14 11 38 38 H 1.07994 * 120.12739 * 180.27529 * 16 15 14 39 39 H 0.97004 * 120.00239 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.12917 * 179.97438 * 26 17 16 41 41 H 1.07993 * 119.87830 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6214 1.4025 -0.9314 5 6 3.0351 1.3331 1.1817 6 6 3.8876 2.6016 1.1110 7 6 4.8441 2.6295 2.2752 8 8 4.8442 1.7271 3.0787 9 8 5.7000 3.6538 2.4163 10 7 1.1161 2.4159 0.1203 11 16 0.5678 3.1874 -1.2386 12 8 -0.3487 4.1787 -0.7951 13 8 1.7154 3.4848 -2.0219 14 6 -0.3731 2.0163 -2.1593 15 6 0.2525 1.2288 -3.1135 16 6 -0.4715 0.3068 -3.8345 17 6 -1.8539 0.1735 -3.6085 18 6 -2.6092 -0.7657 -4.3480 19 1 -2.1243 -1.6290 -4.7791 20 6 -3.9849 -0.5764 -4.5212 21 7 -4.5135 0.6030 -4.3190 22 14 -5.0664 -2.0079 -5.0413 23 1 -4.9779 -3.0891 -4.0273 24 1 -6.4744 -1.5493 -5.1537 25 1 -4.6068 -2.5235 -6.3560 26 6 -2.4794 0.9821 -2.6414 27 6 -1.7346 1.8934 -1.9283 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.6827 0.4573 1.1404 32 1 2.4721 1.3251 2.1151 33 1 3.2400 3.4774 1.1522 34 1 4.4505 2.6096 0.1776 35 1 6.2944 3.6274 3.1785 36 1 0.8101 2.6997 0.9959 37 1 1.3127 1.3365 -3.2888 38 1 0.0187 -0.3087 -4.5742 39 1 -5.4671 0.7342 -4.4387 40 1 -3.5399 0.8883 -2.4602 41 1 -2.2125 2.5153 -1.1859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335819181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:00 Heat of formation + Delta-G solvation = -159.791251 kcal Electronic energy + Delta-G solvation = -27311.711723 eV Core-core repulsion = 23282.499894 eV Total energy + Delta-G solvation = -4029.211829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21098 -39.40151 -38.68367 -38.01149 -37.04896 -36.74725 -35.76719 -33.49717 -32.45435 -31.94712 -31.21363 -28.14905 -27.55091 -24.04700 -23.22012 -22.88497 -21.61755 -20.79534 -20.17536 -19.36810 -19.05872 -18.71150 -18.12252 -17.53382 -17.15819 -17.10415 -16.81063 -16.15481 -15.83953 -15.70885 -15.11263 -14.93537 -14.72964 -14.31258 -14.06951 -13.91912 -13.73891 -13.62731 -13.40216 -13.09778 -12.98600 -12.94763 -12.84837 -12.76004 -12.52694 -12.48940 -12.42842 -12.02289 -11.97605 -11.91393 -11.57302 -11.46985 -11.32070 -11.14324 -10.47401 -10.10781 -9.63813 -9.43857 -8.82903 -6.59048 -0.26964 0.56869 1.15277 1.26410 1.36214 1.44678 1.49738 1.56807 2.12165 2.21981 2.28224 2.57937 2.97887 3.59147 3.62748 3.79023 3.98448 4.10511 4.25966 4.36693 4.38592 4.46786 4.48908 4.66603 4.74903 4.80131 4.94117 4.99806 5.15093 5.17691 5.26123 5.27765 5.31512 5.59352 5.67935 5.68220 5.83769 5.86663 5.99361 6.02311 6.23111 6.25498 6.56222 6.75254 6.88832 7.05185 8.11572 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002891 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.299380 B = 9684.173797 C =10250.297186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.184 4.184 3 C 0.184 3.816 4 H 0.106 0.894 5 C -0.095 4.095 6 C -0.123 4.123 7 C 0.487 3.513 8 O -0.550 6.550 9 O -0.517 6.517 10 N -1.105 6.105 11 S 2.719 3.281 12 O -1.008 7.008 13 O -0.994 6.994 14 C -0.784 4.784 15 C 0.010 3.990 16 C -0.253 4.253 17 C 0.118 3.882 18 C -0.471 4.471 19 H 0.089 0.911 20 C 0.036 3.964 21 N -0.801 5.801 22 Si 0.987 3.013 23 H -0.257 1.257 24 H -0.267 1.267 25 H -0.256 1.256 26 C -0.203 4.203 27 C -0.014 4.014 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.426 0.574 36 H 0.425 0.575 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.296 0.704 40 H 0.105 0.895 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.923 -0.148 9.940 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.203 4.203 3 C 0.077 3.923 4 H 0.124 0.876 5 C -0.134 4.134 6 C -0.161 4.161 7 C 0.331 3.669 8 O -0.441 6.441 9 O -0.331 6.331 10 N -0.865 5.865 11 S 2.815 3.185 12 O -0.999 6.999 13 O -0.984 6.984 14 C -0.877 4.877 15 C -0.010 4.010 16 C -0.273 4.273 17 C 0.115 3.885 18 C -0.498 4.498 19 H 0.107 0.893 20 C -0.183 4.183 21 N -0.424 5.424 22 Si 0.807 3.193 23 H -0.181 1.181 24 H -0.192 1.192 25 H -0.180 1.180 26 C -0.223 4.223 27 C -0.034 4.034 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.288 0.712 36 H 0.261 0.739 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.705 0.640 9.427 15.043 hybrid contribution -1.028 -1.010 0.294 1.471 sum 10.677 -0.370 9.722 14.445 Atomic orbital electron populations 1.23904 0.96805 1.01713 0.98443 1.23313 0.95902 0.98637 1.02444 1.19889 0.88495 0.83226 1.00666 0.87619 1.21544 0.96652 0.97375 0.97871 1.21535 0.96622 1.02030 0.95882 1.23702 0.79125 0.78035 0.86003 1.90721 1.69729 1.38450 1.45249 1.84530 1.48647 1.46833 1.53044 1.55484 1.59146 1.48497 1.23406 1.00487 0.72426 0.72873 0.72715 1.93475 1.65645 1.58543 1.82190 1.93468 1.50889 1.83804 1.70287 1.29496 1.06633 1.28638 1.22911 1.20334 0.98066 0.91320 0.91301 1.21168 0.94951 1.05238 1.05944 1.18114 0.92340 0.89523 0.88537 1.20164 0.93648 1.07819 1.28191 0.89284 1.26950 0.99783 0.98971 0.92632 1.69860 1.15460 1.24028 1.33098 0.85158 0.76559 0.77667 0.79928 1.18108 1.19160 1.18019 1.21271 0.99414 1.01819 0.99841 1.20317 0.92167 0.94644 0.96316 0.88973 0.89494 0.84841 0.88489 0.90098 0.86801 0.85680 0.71229 0.73909 0.85787 0.87594 0.89271 0.87726 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 12.41 67.78 0.84 -4.07 16 2 C -0.18 -4.26 9.52 25.64 0.24 -4.02 16 3 C 0.18 3.84 2.84 44.25 0.13 3.97 16 4 H 0.11 2.20 7.50 -2.39 -0.02 2.18 16 5 C -0.10 -1.58 4.09 30.60 0.12 -1.45 16 6 C -0.12 -1.91 5.70 29.84 0.17 -1.74 16 7 C 0.49 8.45 8.33 71.23 0.59 9.04 16 8 O -0.55 -12.82 16.74 21.96 0.37 -12.45 16 9 O -0.52 -6.83 13.42 -51.38 -0.69 -7.52 16 10 N -1.11 -26.38 3.43 -172.52 -0.59 -26.97 16 11 S 2.72 92.37 5.60 -56.49 -0.32 92.06 16 12 O -1.01 -39.91 17.26 -128.00 -2.21 -42.12 16 13 O -0.99 -36.44 16.59 -128.00 -2.12 -38.56 16 14 C -0.78 -31.44 3.71 22.46 0.08 -31.36 16 15 C 0.01 0.39 9.43 22.22 0.21 0.60 16 16 C -0.25 -11.43 9.80 22.73 0.22 -11.20 16 17 C 0.12 5.90 5.58 -21.29 -0.12 5.78 16 18 C -0.47 -23.13 9.05 23.46 0.21 -22.92 16 19 H 0.09 4.13 7.91 -2.91 -0.02 4.11 16 20 C 0.04 1.64 5.14 85.26 0.44 2.08 16 21 N -0.80 -39.00 10.95 21.83 0.24 -38.76 16 22 Si 0.99 34.63 29.60 68.60 2.03 36.66 16 23 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 24 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 25 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 26 C -0.20 -10.03 8.70 22.73 0.20 -9.84 16 27 C -0.01 -0.64 8.14 22.22 0.18 -0.46 16 28 H 0.09 2.82 4.39 -2.91 -0.01 2.81 16 29 H 0.09 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.08 1.37 8.10 -2.38 -0.02 1.35 16 33 H 0.11 1.68 7.75 -2.39 -0.02 1.66 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.43 2.07 9.10 -74.06 -0.67 1.40 16 36 H 0.42 8.19 8.84 -96.75 -0.85 7.34 16 37 H 0.12 4.41 7.59 -2.91 -0.02 4.39 16 38 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.30 12.96 8.30 -92.71 -0.77 12.19 16 40 H 0.10 5.40 6.15 -2.91 -0.02 5.39 16 41 H 0.11 4.52 7.60 -2.91 -0.02 4.50 16 Total: -1.00 -67.38 360.98 -0.21 -67.59 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.44 Total: 35.66 kcal Atomic # 6 Polarization: -69.11 SS G_CDS: 3.53 Total: -65.59 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.35 Total: -65.73 kcal Atomic # 8 Polarization: -95.99 SS G_CDS: -4.65 Total: -100.65 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 92.37 SS G_CDS: -0.32 Total: 92.06 kcal Total: -67.38 -0.21 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335819181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.206 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds