Wall clock time and date at job start Tue Mar 31 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00061 * 2 1 4 4 H 1.09000 * 109.46870 * 4.99379 * 3 2 1 5 5 C 1.53000 * 109.47026 * 124.99947 * 3 2 1 6 6 C 1.53007 * 109.46923 * 184.99936 * 5 3 2 7 7 C 1.50696 * 109.46933 * 179.97438 * 6 5 3 8 8 O 1.20818 * 120.00325 * 0.02562 * 7 6 5 9 9 O 1.34229 * 119.99775 * 179.97438 * 7 6 5 10 10 N 1.46508 * 109.46991 * 244.99680 * 3 2 1 11 11 S 1.65596 * 119.99744 * 94.99813 * 10 3 2 12 12 O 1.42100 * 106.40413 * 311.46132 * 11 10 3 13 13 O 1.42104 * 106.39892 * 178.54110 * 11 10 3 14 14 C 1.76195 * 107.22015 * 65.00311 * 11 10 3 15 15 C 1.38636 * 119.75257 * 89.99350 * 14 11 10 16 16 C 1.37615 * 120.25185 * 179.70595 * 15 14 11 17 17 C 1.40720 * 119.74367 * 0.27407 * 16 15 14 18 18 C 1.41400 * 120.24537 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99966 * 204.38968 * 18 17 16 20 20 C 1.39950 * 119.99539 * 24.39535 * 18 17 16 21 21 N 1.30819 * 120.00082 * 17.85436 * 20 18 17 22 22 Si 1.86800 * 119.99528 * 197.85557 * 20 18 17 23 23 H 1.48492 * 109.47384 * 59.99611 * 22 20 18 24 24 H 1.48500 * 109.46729 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46863 * 299.99545 * 22 20 18 26 26 C 1.40718 * 119.51008 * 0.02562 * 17 16 15 27 27 C 1.37614 * 119.74514 * 359.97438 * 26 17 16 28 28 H 1.08000 * 120.00188 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99618 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00079 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47036 * 304.99474 * 5 3 2 32 32 H 1.08996 * 109.47252 * 65.00364 * 5 3 2 33 33 H 1.09004 * 109.46847 * 300.00109 * 6 5 3 34 34 H 1.09001 * 109.46768 * 59.99675 * 6 5 3 35 35 H 0.96695 * 117.00215 * 180.02562 * 9 7 6 36 36 H 0.96999 * 119.99694 * 275.00110 * 10 3 2 37 37 H 1.08001 * 119.87542 * 359.97438 * 15 14 11 38 38 H 1.08000 * 120.13427 * 180.30023 * 16 15 14 39 39 H 0.97001 * 119.99459 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.12519 * 180.02562 * 26 17 16 41 41 H 1.08007 * 119.87423 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0895 5 6 3.0350 1.3331 1.1816 6 6 3.7092 2.7047 1.2552 7 6 4.6656 2.7324 2.4194 8 8 4.7952 1.7554 3.1183 9 8 5.3744 3.8423 2.6794 10 7 2.8133 1.4361 -1.2518 11 16 2.1593 2.2684 -2.5254 12 8 0.8363 1.7765 -2.6893 13 8 3.1313 2.2446 -3.5617 14 6 2.0062 3.9509 -2.0254 15 6 3.0516 4.8333 -2.2503 16 6 2.9407 6.1511 -1.8695 17 6 1.7627 6.6004 -1.2445 18 6 1.6371 7.9522 -0.8493 19 1 0.9578 8.2215 -0.0541 20 6 2.3931 8.9412 -1.4888 21 7 2.9389 8.6972 -2.6524 22 14 2.6229 10.6096 -0.6807 23 1 3.2960 10.4357 0.6314 24 1 3.4571 11.4724 -1.5552 25 1 1.2974 11.2473 -0.4764 26 6 0.7105 5.6944 -1.0156 27 6 0.8435 4.3812 -1.4049 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.4883 1.1470 2.1060 32 1 3.7937 0.5622 1.0466 33 1 4.2560 2.8908 0.3308 34 1 2.9506 3.4756 1.3902 35 1 5.9752 3.8122 3.4364 36 1 3.6927 1.0353 -1.3346 37 1 3.9548 4.4863 -2.7300 38 1 3.7543 6.8379 -2.0499 39 1 3.4632 9.3826 -3.0954 40 1 -0.1982 6.0286 -0.5371 41 1 0.0371 3.6841 -1.2306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335819182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:03 Heat of formation + Delta-G solvation = -145.847551 kcal Electronic energy + Delta-G solvation = -27587.620615 eV Core-core repulsion = 23559.013430 eV Total energy + Delta-G solvation = -4028.607185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.27828 -37.70349 -37.47620 -36.41948 -36.09985 -35.10972 -34.07817 -32.52406 -31.82563 -30.29582 -29.51755 -26.93137 -25.85717 -22.96381 -21.53545 -21.24829 -20.68479 -19.95295 -19.02515 -18.12935 -17.65886 -17.19504 -16.56137 -16.46960 -16.23217 -15.90806 -15.46571 -14.70856 -14.26896 -14.17085 -13.91491 -13.66325 -13.40682 -13.23455 -12.94816 -12.47884 -12.23429 -12.04062 -11.94007 -11.78207 -11.56271 -11.54771 -11.45307 -11.37709 -11.35590 -11.24757 -11.03253 -10.98706 -10.89819 -10.60867 -10.47247 -9.82830 -9.70102 -9.51968 -9.41376 -9.12141 -8.00370 -7.75049 -7.17372 -4.83830 1.21447 2.18546 2.21539 2.35030 2.85642 2.86347 2.88481 2.92266 3.05629 3.63356 3.76716 4.21576 4.50381 4.64900 4.80799 4.96405 5.12017 5.22998 5.25027 5.33959 5.46726 5.58550 5.66373 5.71785 5.95073 6.00991 6.05965 6.08476 6.20450 6.47233 6.64467 6.66228 6.67734 6.84780 6.88447 7.00068 7.24576 7.30104 7.38549 7.59995 7.72932 7.86764 7.93024 8.28273 8.47503 8.60926 9.73916 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.004352 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.869654 B = 6432.735492 C = 8089.709057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.176 4.176 3 C 0.187 3.813 4 H 0.094 0.906 5 C -0.106 4.106 6 C -0.120 4.120 7 C 0.482 3.518 8 O -0.525 6.525 9 O -0.513 6.513 10 N -1.121 6.121 11 S 2.688 3.312 12 O -0.979 6.979 13 O -0.985 6.985 14 C -0.789 4.789 15 C -0.014 4.014 16 C -0.181 4.181 17 C 0.140 3.860 18 C -0.434 4.434 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.763 5.763 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.237 4.237 27 C -0.002 4.002 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.406 0.594 36 H 0.410 0.590 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.290 0.710 40 H 0.099 0.901 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -7.830 8.055 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.080 3.920 4 H 0.112 0.888 5 C -0.145 4.145 6 C -0.157 4.157 7 C 0.326 3.674 8 O -0.415 6.415 9 O -0.324 6.324 10 N -0.875 5.875 11 S 2.787 3.213 12 O -0.969 6.969 13 O -0.976 6.976 14 C -0.885 4.885 15 C -0.035 4.035 16 C -0.202 4.202 17 C 0.136 3.864 18 C -0.461 4.461 19 H 0.105 0.895 20 C -0.150 4.150 21 N -0.385 5.385 22 Si 0.740 3.260 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.022 4.022 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.264 0.736 36 H 0.243 0.757 37 H 0.120 0.880 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.741 -8.300 6.880 10.920 hybrid contribution 0.990 1.252 1.086 1.931 sum 2.731 -7.047 7.966 10.981 Atomic orbital electron populations 1.23899 0.95881 1.02188 0.97786 1.23143 0.96149 0.98281 1.02058 1.19775 0.92646 0.96151 0.83399 0.88800 1.21672 0.98795 0.95514 0.98541 1.21459 0.97878 1.00868 0.95528 1.23662 0.78964 0.79522 0.85259 1.90695 1.65075 1.35870 1.49820 1.84623 1.54501 1.40898 1.52386 1.55983 1.30632 1.71615 1.29306 1.01413 0.72938 0.74503 0.72425 1.93495 1.38029 1.80440 1.84948 1.93500 1.62216 1.88154 1.53728 1.29138 1.05771 1.20869 1.32711 1.20234 0.95041 0.93822 0.94378 1.21335 0.98841 0.94142 1.05861 1.17840 0.89841 0.92496 0.86232 1.19920 1.19211 0.91421 1.15569 0.89483 1.26136 0.93058 1.02002 0.93811 1.69812 1.21916 1.35989 1.10791 0.86206 0.79762 0.79748 0.80317 1.18317 1.19888 1.18564 1.21012 0.99080 0.94068 1.11635 1.20155 0.93531 0.95792 0.92685 0.88410 0.88053 0.87180 0.89683 0.90316 0.86863 0.86711 0.73551 0.75745 0.87965 0.86050 0.89833 0.88263 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 14.32 29.02 0.42 -1.44 16 2 C -0.18 -2.05 9.10 -36.02 -0.33 -2.38 16 3 C 0.19 2.27 2.52 -69.08 -0.17 2.10 16 4 H 0.09 1.20 6.85 -51.93 -0.36 0.84 16 5 C -0.11 -1.14 4.09 -26.73 -0.11 -1.25 16 6 C -0.12 -1.39 5.70 -27.88 -0.16 -1.55 16 7 C 0.48 5.88 8.33 36.00 0.30 6.18 16 8 O -0.53 -7.47 16.74 -18.74 -0.31 -7.78 16 9 O -0.51 -5.58 13.42 -39.25 -0.53 -6.10 16 10 N -1.12 -14.99 4.91 -5.87 -0.03 -15.02 16 11 S 2.69 48.83 5.64 -107.50 -0.61 48.22 16 12 O -0.98 -19.64 17.03 -57.17 -0.97 -20.61 16 13 O -0.99 -20.56 17.26 -57.17 -0.99 -21.55 16 14 C -0.79 -16.06 5.84 -39.29 -0.23 -16.29 16 15 C -0.01 -0.31 9.49 -39.66 -0.38 -0.69 16 16 C -0.18 -4.30 8.70 -38.87 -0.34 -4.64 16 17 C 0.14 3.35 5.58 -106.82 -0.60 2.75 16 18 C -0.43 -10.21 9.05 -37.74 -0.34 -10.55 16 19 H 0.09 1.93 7.91 -52.49 -0.42 1.51 16 20 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 21 N -0.76 -17.81 10.95 55.55 0.61 -17.20 16 22 Si 0.92 16.53 29.60 -169.99 -5.03 11.50 16 23 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 24 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 25 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 26 C -0.24 -5.24 9.80 -38.87 -0.38 -5.62 16 27 C 0.00 -0.03 8.84 -39.66 -0.35 -0.38 16 28 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 30 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.11 1.32 7.75 -51.93 -0.40 0.91 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.41 2.56 9.10 45.56 0.41 2.97 16 36 H 0.41 4.53 8.84 -34.47 -0.30 4.22 16 37 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 38 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 39 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 40 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 41 H 0.10 1.88 7.60 -52.48 -0.40 1.48 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -31.38 369.81 -9.30 -40.69 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.26 Total: 14.50 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: -2.76 Total: -32.21 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.58 Total: -32.23 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.80 Total: -56.04 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 48.83 SS G_CDS: -0.61 Total: 48.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -9.30 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335819182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.161 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds