Wall clock time and date at job start Tue Mar 31 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00061 * 2 1 4 4 H 1.09000 * 109.46870 * 4.99379 * 3 2 1 5 5 C 1.53000 * 109.47026 * 124.99947 * 3 2 1 6 6 C 1.53007 * 109.46923 * 184.99936 * 5 3 2 7 7 C 1.50696 * 109.46933 * 179.97438 * 6 5 3 8 8 O 1.20818 * 120.00325 * 0.02562 * 7 6 5 9 9 O 1.34229 * 119.99775 * 179.97438 * 7 6 5 10 10 N 1.46508 * 109.46991 * 244.99680 * 3 2 1 11 11 S 1.65596 * 119.99744 * 94.99813 * 10 3 2 12 12 O 1.42100 * 106.40413 * 311.46132 * 11 10 3 13 13 O 1.42104 * 106.39892 * 178.54110 * 11 10 3 14 14 C 1.76195 * 107.22015 * 65.00311 * 11 10 3 15 15 C 1.38636 * 119.75257 * 89.99350 * 14 11 10 16 16 C 1.37615 * 120.25185 * 179.70595 * 15 14 11 17 17 C 1.40720 * 119.74367 * 0.27407 * 16 15 14 18 18 C 1.41400 * 120.24537 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99966 * 204.38968 * 18 17 16 20 20 C 1.39950 * 119.99539 * 24.39535 * 18 17 16 21 21 N 1.30819 * 120.00082 * 17.85436 * 20 18 17 22 22 Si 1.86800 * 119.99528 * 197.85557 * 20 18 17 23 23 H 1.48492 * 109.47384 * 59.99611 * 22 20 18 24 24 H 1.48500 * 109.46729 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46863 * 299.99545 * 22 20 18 26 26 C 1.40718 * 119.51008 * 0.02562 * 17 16 15 27 27 C 1.37614 * 119.74514 * 359.97438 * 26 17 16 28 28 H 1.08000 * 120.00188 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99618 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00079 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47036 * 304.99474 * 5 3 2 32 32 H 1.08996 * 109.47252 * 65.00364 * 5 3 2 33 33 H 1.09004 * 109.46847 * 300.00109 * 6 5 3 34 34 H 1.09001 * 109.46768 * 59.99675 * 6 5 3 35 35 H 0.96695 * 117.00215 * 180.02562 * 9 7 6 36 36 H 0.96999 * 119.99694 * 275.00110 * 10 3 2 37 37 H 1.08001 * 119.87542 * 359.97438 * 15 14 11 38 38 H 1.08000 * 120.13427 * 180.30023 * 16 15 14 39 39 H 0.97001 * 119.99459 * 180.02562 * 21 20 18 40 40 H 1.08006 * 120.12519 * 180.02562 * 26 17 16 41 41 H 1.08007 * 119.87423 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0895 5 6 3.0350 1.3331 1.1816 6 6 3.7092 2.7047 1.2552 7 6 4.6656 2.7324 2.4194 8 8 4.7952 1.7554 3.1183 9 8 5.3744 3.8423 2.6794 10 7 2.8133 1.4361 -1.2518 11 16 2.1593 2.2684 -2.5254 12 8 0.8363 1.7765 -2.6893 13 8 3.1313 2.2446 -3.5617 14 6 2.0062 3.9509 -2.0254 15 6 3.0516 4.8333 -2.2503 16 6 2.9407 6.1511 -1.8695 17 6 1.7627 6.6004 -1.2445 18 6 1.6371 7.9522 -0.8493 19 1 0.9578 8.2215 -0.0541 20 6 2.3931 8.9412 -1.4888 21 7 2.9389 8.6972 -2.6524 22 14 2.6229 10.6096 -0.6807 23 1 3.2960 10.4357 0.6314 24 1 3.4571 11.4724 -1.5552 25 1 1.2974 11.2473 -0.4764 26 6 0.7105 5.6944 -1.0156 27 6 0.8435 4.3812 -1.4049 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.4883 1.1470 2.1060 32 1 3.7937 0.5622 1.0466 33 1 4.2560 2.8908 0.3308 34 1 2.9506 3.4756 1.3902 35 1 5.9752 3.8122 3.4364 36 1 3.6927 1.0353 -1.3346 37 1 3.9548 4.4863 -2.7300 38 1 3.7543 6.8379 -2.0499 39 1 3.4632 9.3826 -3.0954 40 1 -0.1982 6.0286 -0.5371 41 1 0.0371 3.6841 -1.2306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335819182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:03 Heat of formation + Delta-G solvation = -167.154167 kcal Electronic energy + Delta-G solvation = -27588.544539 eV Core-core repulsion = 23559.013430 eV Total energy + Delta-G solvation = -4029.531109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23591 -39.34878 -38.60173 -37.93617 -37.06104 -36.69936 -35.76570 -33.42988 -32.91358 -32.01810 -31.24281 -27.90565 -27.57639 -23.91865 -23.23066 -22.93375 -21.64682 -20.88318 -20.42050 -19.37843 -19.09428 -18.65091 -17.99748 -17.55080 -17.33860 -17.09652 -16.90342 -16.10256 -15.76064 -15.32772 -15.10042 -14.96533 -14.82814 -14.56435 -14.08042 -13.93827 -13.88712 -13.50037 -13.17642 -13.03878 -12.97514 -12.93746 -12.90953 -12.83637 -12.57054 -12.51770 -12.49971 -12.04424 -11.99738 -11.92984 -11.60966 -11.49214 -11.30918 -11.15919 -10.42258 -10.26197 -9.73719 -9.48838 -8.83852 -6.60642 -0.26258 0.53676 1.11409 1.22624 1.37438 1.41289 1.46889 1.51483 2.12996 2.21085 2.36190 2.61023 3.00409 3.58256 3.65594 3.74665 3.91555 4.06583 4.23222 4.33138 4.36842 4.40246 4.56571 4.61666 4.73780 4.77046 4.93122 4.98893 5.08799 5.14992 5.17712 5.27332 5.28679 5.57328 5.64562 5.65000 5.78636 5.82605 5.95849 5.98131 6.20719 6.23881 6.54415 6.73234 6.86209 7.03111 8.10699 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.004352 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.869654 B = 6432.735492 C = 8089.709057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.183 4.183 3 C 0.183 3.817 4 H 0.087 0.913 5 C -0.096 4.096 6 C -0.124 4.124 7 C 0.489 3.511 8 O -0.547 6.547 9 O -0.518 6.518 10 N -1.103 6.103 11 S 2.719 3.281 12 O -0.993 6.993 13 O -1.010 7.010 14 C -0.791 4.791 15 C -0.017 4.017 16 C -0.204 4.204 17 C 0.114 3.886 18 C -0.466 4.466 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.799 5.799 22 Si 0.987 3.013 23 H -0.255 1.255 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.252 4.252 27 C 0.001 3.999 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.425 0.575 36 H 0.424 0.576 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.297 0.703 40 H 0.110 0.890 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -8.739 9.023 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C 0.076 3.924 4 H 0.105 0.895 5 C -0.135 4.135 6 C -0.161 4.161 7 C 0.333 3.667 8 O -0.438 6.438 9 O -0.332 6.332 10 N -0.863 5.863 11 S 2.814 3.186 12 O -0.983 6.983 13 O -1.001 7.001 14 C -0.884 4.884 15 C -0.037 4.037 16 C -0.224 4.224 17 C 0.110 3.890 18 C -0.493 4.493 19 H 0.110 0.890 20 C -0.183 4.183 21 N -0.422 5.422 22 Si 0.807 3.193 23 H -0.179 1.179 24 H -0.192 1.192 25 H -0.180 1.180 26 C -0.272 4.272 27 C -0.019 4.019 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.287 0.713 36 H 0.260 0.740 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.779 -9.182 7.856 12.214 hybrid contribution 0.980 1.380 0.796 1.870 sum 2.759 -7.802 8.653 11.973 Atomic orbital electron populations 1.24106 0.96152 1.02820 0.97416 1.23247 0.96246 0.98456 1.02279 1.19952 0.92874 0.96635 0.82890 0.89453 1.21597 0.98662 0.95184 0.98054 1.21502 0.97806 1.01381 0.95417 1.23646 0.78755 0.79336 0.84944 1.90687 1.65878 1.36604 1.50609 1.84587 1.54775 1.40314 1.53485 1.55509 1.31493 1.70444 1.28847 1.00503 0.72273 0.73435 0.72340 1.93477 1.39209 1.80162 1.85485 1.93466 1.62833 1.88212 1.55583 1.29572 1.05122 1.22580 1.31174 1.20396 0.95920 0.93446 0.93982 1.21320 0.98838 0.94811 1.07469 1.18169 0.90466 0.93452 0.86872 1.20201 1.20690 0.91942 1.16501 0.89009 1.26964 0.92105 1.05387 0.93856 1.69859 1.22780 1.37519 1.12058 0.85153 0.79807 0.75105 0.79247 1.17934 1.19179 1.18029 1.21223 0.99164 0.94638 1.12218 1.20421 0.94110 0.95625 0.91742 0.86622 0.88801 0.85359 0.88930 0.89255 0.86978 0.87220 0.71327 0.73954 0.87015 0.87472 0.89180 0.87197 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 14.32 67.78 0.97 -2.52 16 2 C -0.18 -3.75 9.10 25.65 0.23 -3.52 16 3 C 0.18 4.05 2.52 44.25 0.11 4.16 16 4 H 0.09 2.08 6.85 -2.39 -0.02 2.06 16 5 C -0.10 -1.85 4.09 30.60 0.13 -1.73 16 6 C -0.12 -2.71 5.70 29.85 0.17 -2.54 16 7 C 0.49 11.29 8.33 71.23 0.59 11.88 16 8 O -0.55 -14.73 16.74 21.99 0.37 -14.36 16 9 O -0.52 -10.64 13.42 -51.40 -0.69 -11.33 16 10 N -1.10 -27.23 4.91 -172.50 -0.85 -28.08 16 11 S 2.72 94.78 5.64 -56.49 -0.32 94.46 16 12 O -0.99 -38.06 17.03 -128.00 -2.18 -40.24 16 13 O -1.01 -40.91 17.26 -128.00 -2.21 -43.12 16 14 C -0.79 -31.77 5.84 22.46 0.13 -31.64 16 15 C -0.02 -0.77 9.49 22.22 0.21 -0.55 16 16 C -0.20 -9.96 8.70 22.73 0.20 -9.77 16 17 C 0.11 5.60 5.58 -21.29 -0.12 5.48 16 18 C -0.47 -22.44 9.05 23.46 0.21 -22.23 16 19 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 20 C 0.04 1.64 5.14 85.26 0.44 2.08 16 21 N -0.80 -38.28 10.95 21.83 0.24 -38.04 16 22 Si 0.99 33.84 29.60 68.60 2.03 35.87 16 23 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 24 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 25 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 26 C -0.25 -11.20 9.80 22.73 0.22 -10.98 16 27 C 0.00 0.03 8.84 22.22 0.20 0.23 16 28 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.09 2.08 7.84 -2.91 -0.02 2.06 16 30 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.11 2.48 7.75 -2.38 -0.02 2.46 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.43 4.75 9.10 -74.06 -0.67 4.08 16 36 H 0.42 8.33 8.84 -96.75 -0.85 7.47 16 37 H 0.11 4.59 7.60 -2.91 -0.02 4.57 16 38 H 0.11 5.45 6.16 -2.91 -0.02 5.43 16 39 H 0.30 12.77 8.30 -92.71 -0.77 12.00 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.13 4.42 7.60 -2.91 -0.02 4.40 16 Total: -1.00 -66.82 369.81 -0.36 -67.18 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.45 Total: 39.30 kcal Atomic # 6 Polarization: -65.35 SS G_CDS: 3.69 Total: -61.65 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.61 Total: -66.11 kcal Atomic # 8 Polarization: -104.33 SS G_CDS: -4.71 Total: -109.04 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Atomic # 16 Polarization: 94.78 SS G_CDS: -0.32 Total: 94.46 kcal Total: -66.82 -0.36 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335819182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.974 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds