Wall clock time and date at job start Tue Mar 31 2020 22:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99695 * 2 1 4 4 H 1.48508 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47044 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47178 * 60.00339 * 3 2 1 7 7 C 1.38793 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00593 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00158 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47210 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99671 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00171 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99916 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47005 * 324.99779 * 14 13 11 16 16 C 1.53003 * 109.46846 * 85.00171 * 14 13 11 17 17 O 1.42895 * 109.47188 * 64.99760 * 16 14 13 18 18 C 1.50696 * 109.47009 * 204.99830 * 14 13 11 19 19 O 1.20825 * 119.99897 * 0.02562 * 18 14 13 20 20 O 1.34227 * 119.99883 * 179.97438 * 18 14 13 21 21 C 1.45205 * 116.99929 * 180.02562 * 20 18 14 22 22 C 1.50701 * 109.46997 * 180.02562 * 21 20 18 23 23 C 1.38235 * 119.99808 * 89.99829 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00070 * 0.07188 * 24 23 22 26 26 C 1.38234 * 119.99892 * 359.90902 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97574 * 22 21 20 28 28 H 0.97000 * 120.00605 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47167 * 60.00085 * 10 9 7 30 30 H 1.08999 * 109.47428 * 299.99887 * 10 9 7 31 31 H 0.96989 * 120.00104 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46605 * 185.00249 * 16 14 13 33 33 H 1.08997 * 109.47009 * 304.99301 * 16 14 13 34 34 H 0.96697 * 113.99793 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.47592 * 59.99660 * 21 20 18 36 36 H 1.09001 * 109.46728 * 299.99506 * 21 20 18 37 37 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 38 38 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.99633 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99751 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00371 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3026 -0.0001 12 8 0.7913 -5.5022 0.0000 13 7 2.8444 -6.3430 0.0003 14 6 2.3307 -7.7150 0.0003 15 1 1.4147 -7.7600 0.5894 16 6 2.0347 -8.1487 -1.4369 17 8 3.2545 -8.2016 -2.1792 18 6 3.3602 -8.6369 0.6011 19 8 4.4147 -8.1933 0.9900 20 8 3.1054 -9.9506 0.7053 21 6 4.1425 -10.7786 1.2947 22 6 3.6818 -12.2130 1.3279 23 6 3.9451 -13.0485 0.2585 24 6 3.5229 -14.3645 0.2892 25 6 2.8361 -14.8445 1.3886 26 6 2.5732 -14.0091 2.4582 27 6 2.9963 -12.6935 2.4279 28 1 -0.4851 0.8400 0.0004 29 1 3.1245 -3.7312 0.8905 30 1 3.1246 -3.7313 -0.8894 31 1 3.8011 -6.1834 0.0014 32 1 1.5701 -9.1347 -1.4304 33 1 1.3578 -7.4312 -1.9007 34 1 3.1424 -8.4706 -3.1013 35 1 4.3460 -10.4383 2.3100 36 1 5.0511 -10.7029 0.6972 37 1 4.4768 -12.6719 -0.6029 38 1 3.7282 -15.0171 -0.5465 39 1 2.5060 -15.8725 1.4124 40 1 2.0370 -14.3843 3.3173 41 1 2.7905 -12.0408 3.2634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337783058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:23 Heat of formation + Delta-G solvation = -142.443648 kcal Electronic energy + Delta-G solvation = -25606.054884 eV Core-core repulsion = 21577.595304 eV Total energy + Delta-G solvation = -4028.459580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03829 -39.70020 -39.11965 -37.13514 -36.72850 -34.31154 -32.64424 -32.42952 -31.35834 -30.79153 -28.34089 -26.94285 -25.48359 -24.38800 -23.04459 -21.88036 -21.26947 -20.28451 -18.43931 -17.82691 -17.62346 -17.40006 -16.92287 -16.74541 -16.18484 -15.77223 -15.48538 -15.17776 -14.93653 -14.80097 -14.42765 -13.98838 -13.89169 -13.76509 -13.57796 -13.39133 -13.21204 -12.84177 -12.64575 -12.56131 -12.14808 -11.83579 -11.57311 -11.55200 -11.06474 -11.02133 -10.97848 -10.81648 -10.75598 -10.27193 -9.81408 -9.55052 -9.36771 -9.33265 -9.12549 -9.05594 -8.25076 -6.50608 -6.21967 -3.92490 0.71136 0.95705 1.93781 2.21185 2.94990 3.03142 3.22363 3.28204 3.32791 3.40887 3.65373 3.93547 4.13203 4.20333 4.34149 4.45762 4.58336 4.67596 4.74445 4.79616 4.96071 5.01943 5.05957 5.12134 5.13665 5.18638 5.31479 5.42732 5.48947 5.58210 5.66923 5.88825 5.95830 6.05676 6.07031 6.10179 6.15520 6.38285 6.51355 7.33939 7.43453 7.59969 7.61653 8.35999 8.46405 9.23892 10.85536 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.001830 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.346247 B =15296.733578 C =15363.102583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.152 4.152 11 C 0.540 3.460 12 O -0.518 6.518 13 N -0.718 5.718 14 C 0.162 3.838 15 H 0.139 0.861 16 C 0.069 3.931 17 O -0.570 6.570 18 C 0.473 3.527 19 O -0.497 6.497 20 O -0.347 6.347 21 C 0.109 3.891 22 C -0.097 4.097 23 C -0.094 4.094 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.094 4.094 28 H 0.268 0.732 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.412 0.588 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.384 0.616 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -29.969 0.045 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.327 3.673 12 O -0.392 6.392 13 N -0.376 5.376 14 C 0.054 3.946 15 H 0.156 0.844 16 C -0.011 4.011 17 O -0.376 6.376 18 C 0.314 3.686 19 O -0.384 6.384 20 O -0.263 6.263 21 C 0.036 3.964 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.142 4.142 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.186 -29.895 0.761 30.538 hybrid contribution 2.291 1.097 -0.438 2.578 sum 8.477 -28.798 0.323 30.021 Atomic orbital electron populations 1.70019 1.05948 1.27364 1.47004 1.24987 0.95030 0.99039 0.94509 0.86111 0.79638 0.81834 0.77884 1.19582 1.20571 1.20564 1.22918 0.95021 0.91555 1.58809 0.90773 1.85343 1.04741 0.96351 1.96754 1.23520 1.06752 0.94543 1.05401 1.20389 0.86287 0.86154 0.74496 1.90706 1.15184 1.85484 1.47809 1.45804 1.11377 1.02884 1.77509 1.20419 0.96080 0.81770 0.96294 0.84382 1.22559 0.87152 1.01103 0.90246 1.86465 1.31341 1.92322 1.27455 1.23445 0.87677 0.81907 0.75531 1.90667 1.25889 1.76579 1.45240 1.86535 1.46224 1.19123 1.74435 1.21833 0.89281 0.85917 0.99359 1.19509 1.01075 0.93600 0.95555 1.21120 0.98941 0.93728 0.97397 1.21180 0.98792 0.95617 0.98612 1.21264 0.97914 0.99912 0.93716 1.21186 1.00263 0.93748 0.98932 1.21136 0.96285 0.95916 0.97888 0.92234 0.88858 0.88845 0.75166 0.91437 0.90864 0.76848 0.90089 0.90026 0.85685 0.85684 0.85819 0.85638 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.10 5.49 -17.44 -0.10 2.00 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.54 10.05 7.81 -10.99 -0.09 9.96 16 12 O -0.52 -11.13 15.52 5.55 0.09 -11.04 16 13 N -0.72 -10.66 4.90 -54.93 -0.27 -10.93 16 14 C 0.16 2.06 2.89 -69.08 -0.20 1.86 16 15 H 0.14 1.71 7.58 -51.93 -0.39 1.32 16 16 C 0.07 0.73 6.78 37.16 0.25 0.99 16 17 O -0.57 -5.96 13.09 -35.23 -0.46 -6.42 16 18 C 0.47 5.97 6.84 36.00 0.25 6.21 16 19 O -0.50 -7.34 15.59 -18.75 -0.29 -7.63 16 20 O -0.35 -3.79 10.13 -39.25 -0.40 -4.19 16 21 C 0.11 1.00 5.59 36.01 0.20 1.20 16 22 C -0.10 -0.80 5.52 -104.63 -0.58 -1.38 16 23 C -0.09 -0.69 9.70 -39.58 -0.38 -1.07 16 24 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 25 C -0.11 -0.67 10.05 -39.59 -0.40 -1.07 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.09 -0.71 9.70 -39.59 -0.38 -1.10 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 31 H 0.41 5.82 7.79 -40.82 -0.32 5.50 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.38 2.28 9.12 45.56 0.42 2.69 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -36.14 379.63 -8.30 -44.44 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.48 Total: 5.36 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.70 Total: -2.63 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.46 Total: -36.29 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.06 Total: -29.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.14 -8.30 -44.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337783058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.004 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds