Wall clock time and date at job start Tue Mar 31 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99695 * 2 1 4 4 H 1.48508 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47044 * 300.00094 * 3 2 1 6 6 H 1.48498 * 109.47178 * 60.00339 * 3 2 1 7 7 C 1.38793 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00593 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00158 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47210 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99671 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00171 * 180.02562 * 11 10 9 14 14 C 1.46508 * 119.99916 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.47005 * 324.99779 * 14 13 11 16 16 C 1.53003 * 109.46846 * 85.00171 * 14 13 11 17 17 O 1.42895 * 109.47188 * 64.99760 * 16 14 13 18 18 C 1.50696 * 109.47009 * 204.99830 * 14 13 11 19 19 O 1.20825 * 119.99897 * 0.02562 * 18 14 13 20 20 O 1.34227 * 119.99883 * 179.97438 * 18 14 13 21 21 C 1.45205 * 116.99929 * 180.02562 * 20 18 14 22 22 C 1.50701 * 109.46997 * 180.02562 * 21 20 18 23 23 C 1.38235 * 119.99808 * 89.99829 * 22 21 20 24 24 C 1.38243 * 119.99602 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00070 * 0.07188 * 24 23 22 26 26 C 1.38234 * 119.99892 * 359.90902 * 25 24 23 27 27 C 1.38230 * 119.99865 * 269.97574 * 22 21 20 28 28 H 0.97000 * 120.00605 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47167 * 60.00085 * 10 9 7 30 30 H 1.08999 * 109.47428 * 299.99887 * 10 9 7 31 31 H 0.96989 * 120.00104 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46605 * 185.00249 * 16 14 13 33 33 H 1.08997 * 109.47009 * 304.99301 * 16 14 13 34 34 H 0.96697 * 113.99793 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.47592 * 59.99660 * 21 20 18 36 36 H 1.09001 * 109.46728 * 299.99506 * 21 20 18 37 37 H 1.08000 * 120.00616 * 359.70324 * 23 22 21 38 38 H 1.08001 * 119.99556 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.99633 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99751 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00371 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3026 -0.0001 12 8 0.7913 -5.5022 0.0000 13 7 2.8444 -6.3430 0.0003 14 6 2.3307 -7.7150 0.0003 15 1 1.4147 -7.7600 0.5894 16 6 2.0347 -8.1487 -1.4369 17 8 3.2545 -8.2016 -2.1792 18 6 3.3602 -8.6369 0.6011 19 8 4.4147 -8.1933 0.9900 20 8 3.1054 -9.9506 0.7053 21 6 4.1425 -10.7786 1.2947 22 6 3.6818 -12.2130 1.3279 23 6 3.9451 -13.0485 0.2585 24 6 3.5229 -14.3645 0.2892 25 6 2.8361 -14.8445 1.3886 26 6 2.5732 -14.0091 2.4582 27 6 2.9963 -12.6935 2.4279 28 1 -0.4851 0.8400 0.0004 29 1 3.1245 -3.7312 0.8905 30 1 3.1246 -3.7313 -0.8894 31 1 3.8011 -6.1834 0.0014 32 1 1.5701 -9.1347 -1.4304 33 1 1.3578 -7.4312 -1.9007 34 1 3.1424 -8.4706 -3.1013 35 1 4.3460 -10.4383 2.3100 36 1 5.0511 -10.7029 0.6972 37 1 4.4768 -12.6719 -0.6029 38 1 3.7282 -15.0171 -0.5465 39 1 2.5060 -15.8725 1.4124 40 1 2.0370 -14.3843 3.3173 41 1 2.7905 -12.0408 3.2634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337783058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:22 Heat of formation + Delta-G solvation = -168.110112 kcal Electronic energy + Delta-G solvation = -25607.167866 eV Core-core repulsion = 21577.595304 eV Total energy + Delta-G solvation = -4029.572562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04330 -40.70410 -40.02045 -38.08897 -37.65425 -35.53751 -34.58770 -33.27280 -32.08364 -31.84337 -29.70349 -27.70283 -27.58718 -25.31983 -23.53670 -22.67884 -22.17828 -21.52134 -20.06447 -19.03068 -18.62731 -18.43672 -17.69240 -17.60018 -17.55624 -16.88320 -16.68908 -16.50739 -16.02174 -15.94939 -15.78935 -15.23163 -14.89888 -14.67432 -14.45765 -14.37202 -14.24977 -13.99099 -13.82756 -13.49986 -13.30558 -13.16573 -12.95491 -12.90775 -12.60770 -12.13656 -12.10567 -11.79787 -11.74285 -11.71243 -11.24252 -11.15914 -10.97129 -10.40644 -10.29994 -9.86639 -9.84632 -8.66401 -8.35282 -6.12743 0.14154 0.45953 0.94060 1.11699 1.35557 1.41324 1.45928 1.53822 1.64079 2.19485 2.26755 2.84141 2.99098 3.12393 3.26991 3.38829 3.69588 3.76198 3.83019 3.85931 4.09380 4.20759 4.23485 4.25757 4.27163 4.29838 4.39874 4.50149 4.55958 4.58613 4.69222 4.99007 5.07915 5.11262 5.18098 5.42725 5.50923 5.56811 5.58132 6.03855 6.20072 6.26790 6.47138 6.76851 7.03443 7.06677 8.74074 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.001830 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.346247 B =15296.733578 C =15363.102583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.081 0.919 9 S -0.136 6.136 10 C -0.132 4.132 11 C 0.547 3.453 12 O -0.550 6.550 13 N -0.702 5.702 14 C 0.154 3.846 15 H 0.141 0.859 16 C 0.077 3.923 17 O -0.584 6.584 18 C 0.481 3.519 19 O -0.522 6.522 20 O -0.343 6.343 21 C 0.108 3.892 22 C -0.114 4.114 23 C -0.104 4.104 24 C -0.129 4.129 25 C -0.113 4.113 26 C -0.130 4.130 27 C -0.108 4.108 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.404 0.596 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 -31.352 -0.274 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.697 4.697 8 H 0.099 0.901 9 S 0.091 5.909 10 C -0.283 4.283 11 C 0.333 3.667 12 O -0.428 6.428 13 N -0.358 5.358 14 C 0.047 3.953 15 H 0.159 0.841 16 C -0.002 4.002 17 O -0.393 6.393 18 C 0.324 3.676 19 O -0.410 6.410 20 O -0.259 6.259 21 C 0.035 3.965 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.148 4.148 27 C -0.126 4.126 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.255 0.745 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.596 -31.334 0.424 32.245 hybrid contribution 1.902 1.308 -0.341 2.334 sum 9.499 -30.026 0.084 31.493 Atomic orbital electron populations 1.70165 1.07853 1.28594 1.47975 1.26083 0.95970 1.03180 0.93707 0.84925 0.78541 0.76454 0.78142 1.18295 1.19801 1.19883 1.23251 0.95390 0.92144 1.58897 0.90078 1.85436 1.09689 0.98768 1.97044 1.23360 1.04014 0.93981 1.06906 1.19968 0.85984 0.86164 0.74543 1.90699 1.16505 1.85790 1.49759 1.45542 1.11120 1.03261 1.75860 1.20664 0.96095 0.80440 0.98118 0.84146 1.22444 0.87076 1.02069 0.88654 1.86416 1.31213 1.92552 1.29129 1.23295 0.87028 0.82409 0.74889 1.90658 1.26838 1.77096 1.46445 1.86527 1.46864 1.18296 1.74211 1.21982 0.88940 0.86279 0.99280 1.19529 1.02332 0.93065 0.96469 1.21314 0.99187 0.94288 0.97451 1.21486 0.98319 0.95474 0.99415 1.21618 0.97168 1.00983 0.93272 1.21473 1.00136 0.93397 0.99823 1.21321 0.96560 0.96745 0.97993 0.91921 0.87390 0.87161 0.74518 0.88762 0.92074 0.74531 0.90013 0.89820 0.84931 0.83646 0.83550 0.83871 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 2 C 0.02 0.89 5.49 84.86 0.47 1.35 16 3 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.49 9.50 67.95 0.65 -30.85 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 10 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 11 C 0.55 20.23 7.81 87.66 0.68 20.91 16 12 O -0.55 -23.95 15.52 -3.05 -0.05 -24.00 16 13 N -0.70 -20.24 4.90 -446.08 -2.19 -22.42 16 14 C 0.15 3.76 2.89 44.24 0.13 3.89 16 15 H 0.14 3.41 7.58 -2.39 -0.02 3.39 16 16 C 0.08 1.53 6.78 71.98 0.49 2.02 16 17 O -0.58 -11.17 13.09 -148.98 -1.95 -13.12 16 18 C 0.48 11.69 6.84 71.23 0.49 12.18 16 19 O -0.52 -15.00 15.59 21.97 0.34 -14.66 16 20 O -0.34 -7.15 10.13 -51.39 -0.52 -7.67 16 21 C 0.11 1.91 5.59 71.24 0.40 2.31 16 22 C -0.11 -1.78 5.52 -19.87 -0.11 -1.89 16 23 C -0.10 -1.40 9.70 22.27 0.22 -1.18 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.16 16 25 C -0.11 -1.13 10.05 22.27 0.22 -0.90 16 26 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 27 C -0.11 -1.54 9.70 22.27 0.22 -1.32 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 30 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 31 H 0.42 11.29 7.79 -92.72 -0.72 10.57 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.40 3.97 9.12 -74.06 -0.68 3.29 16 35 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -78.42 379.63 1.20 -77.22 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.32 Total: 23.53 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.73 Total: -0.81 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.90 Total: -77.67 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -2.18 Total: -59.45 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -78.42 1.20 -77.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337783058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.891 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds