Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48501 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99903 * 3 2 1 6 6 H 1.48493 * 109.47038 * 60.00284 * 3 2 1 7 7 C 1.37881 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47579 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47670 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54118 * 68.37697 * 11 10 9 13 13 O 1.42103 * 110.54130 * 291.62590 * 11 10 9 14 14 N 1.65598 * 104.44980 * 180.02562 * 11 10 9 15 15 C 1.34769 * 120.00325 * 65.00240 * 14 11 10 16 16 O 1.21281 * 119.99967 * 354.99025 * 15 14 11 17 17 C 1.50703 * 120.00140 * 174.99202 * 15 14 11 18 18 O 1.42895 * 115.54766 * 351.75990 * 17 15 14 19 19 C 1.35902 * 116.99904 * 294.36859 * 18 17 15 20 20 C 1.38727 * 120.05547 * 355.21588 * 19 18 17 21 21 C 1.38144 * 119.94415 * 179.76601 * 20 19 18 22 22 C 1.38275 * 120.05677 * 0.50778 * 21 20 19 23 23 C 1.38266 * 120.10596 * 359.74721 * 22 21 20 24 24 C 1.38147 * 120.05976 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49774 * 137.42956 * 17 15 14 26 26 C 1.52999 * 117.49903 * 206.08632 * 17 15 14 27 27 H 0.96996 * 120.00386 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 59.99898 * 9 7 2 29 29 H 1.09002 * 109.47288 * 300.00380 * 9 7 2 30 30 H 1.09003 * 109.46970 * 59.99786 * 10 9 7 31 31 H 1.09002 * 109.47116 * 300.00479 * 10 9 7 32 32 H 0.97001 * 119.99512 * 245.00075 * 14 11 10 33 33 H 1.07998 * 120.03048 * 0.02562 * 20 19 18 34 34 H 1.07996 * 119.97606 * 180.25601 * 21 20 19 35 35 H 1.07999 * 119.94749 * 179.72246 * 22 21 20 36 36 H 1.07999 * 119.97069 * 180.02562 * 23 22 21 37 37 H 1.07995 * 120.02620 * 180.02562 * 24 23 22 38 38 H 1.09007 * 117.49638 * 215.00292 * 25 17 15 39 39 H 1.09001 * 117.50343 * 0.02562 * 25 17 15 40 40 H 1.09000 * 117.50149 * 359.97438 * 26 17 15 41 41 H 1.09000 * 117.49537 * 144.97206 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2331 0.0002 12 8 0.6641 -5.4201 -1.2365 13 8 0.6648 -5.4193 1.2375 14 7 2.5206 -6.3927 0.0009 15 6 3.3470 -6.5119 1.0588 16 8 3.2850 -5.7137 1.9697 17 6 4.3482 -7.6371 1.1097 18 8 4.2192 -8.6238 0.0842 19 6 3.0903 -9.3804 0.0944 20 6 2.1735 -9.2465 1.1270 21 6 1.0244 -10.0133 1.1326 22 6 0.7927 -10.9212 0.1157 23 6 1.7075 -11.0603 -0.9117 24 6 2.8554 -10.2917 -0.9249 25 6 5.7600 -7.3050 1.5970 26 6 4.8113 -8.1088 2.4896 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 2.6182 -6.9861 -0.7602 33 1 2.3559 -8.5404 1.9235 34 1 0.3084 -9.9065 1.9339 35 1 -0.1040 -11.5230 0.1243 36 1 1.5242 -11.7698 -1.7050 37 1 3.5693 -10.4005 -1.7279 38 1 6.5905 -7.8392 1.1352 39 1 5.9646 -6.2727 1.8811 40 1 4.3921 -7.6049 3.3606 41 1 5.0171 -9.1718 2.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348659501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = -88.988043 kcal Electronic energy + Delta-G solvation = -27663.389851 eV Core-core repulsion = 23637.248279 eV Total energy + Delta-G solvation = -4026.141571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43539 -39.61218 -37.97630 -36.72919 -35.76549 -35.58963 -34.36339 -33.91112 -31.22612 -31.19676 -30.04807 -25.84234 -25.48620 -23.41642 -23.07612 -22.45661 -21.69528 -20.81863 -19.45412 -19.27645 -17.75680 -17.34914 -16.66957 -16.26577 -16.06767 -15.88887 -15.75307 -15.04997 -15.01397 -14.79489 -14.55875 -14.33854 -14.26592 -13.66225 -13.50632 -13.43027 -12.58028 -12.46178 -12.26257 -12.02115 -11.99111 -11.83158 -11.76909 -11.68163 -11.65416 -11.28243 -11.10859 -11.03450 -10.94239 -10.63750 -10.46068 -10.37776 -10.29498 -9.73206 -9.26709 -9.19339 -8.54192 -8.51332 -6.13268 -4.18793 0.43412 1.06933 1.12730 1.66591 2.41870 2.57193 3.25786 3.29374 3.32806 3.36631 3.50429 3.69915 4.04231 4.12770 4.27536 4.36622 4.53802 4.58535 4.66535 4.81545 4.84244 4.92878 5.12309 5.14835 5.21134 5.22105 5.39808 5.41323 5.56267 5.62165 5.69411 5.73850 5.99768 6.15631 6.28447 6.34333 6.43931 6.54518 6.96459 7.22646 7.27042 7.32598 7.79941 8.15157 8.84325 9.45846 10.97916 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.003237 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.081384 B = 8649.107573 C = 9532.479403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.562 3.438 12 O -0.950 6.950 13 O -0.937 6.937 14 N -1.051 6.051 15 C 0.562 3.438 16 O -0.479 6.479 17 C -0.012 4.012 18 O -0.267 6.267 19 C 0.107 3.893 20 C -0.195 4.195 21 C -0.079 4.079 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.147 4.147 25 C -0.109 4.109 26 C -0.157 4.157 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.133 0.867 31 H 0.122 0.878 32 H 0.430 0.570 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -23.283 0.749 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.662 3.338 12 O -0.940 6.940 13 O -0.927 6.927 14 N -0.811 5.811 15 C 0.347 3.653 16 O -0.351 6.351 17 C -0.056 4.056 18 O -0.180 6.180 19 C 0.063 3.937 20 C -0.214 4.214 21 C -0.097 4.097 22 C -0.169 4.169 23 C -0.102 4.102 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.195 4.195 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.266 0.734 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.959 -22.847 1.300 24.575 hybrid contribution 0.802 0.887 -0.420 1.268 sum 9.761 -21.959 0.880 24.047 Atomic orbital electron populations 1.69960 1.06121 1.27152 1.49578 1.25071 0.94999 0.99577 0.94843 0.86383 0.79941 0.83024 0.77769 1.19597 1.20776 1.20743 1.21008 0.93153 0.89496 1.52152 0.91862 1.19008 0.92622 0.90332 0.99047 1.30355 1.13734 1.15875 1.10951 1.06888 0.75001 0.77265 0.74639 1.93595 1.70321 1.85185 1.44927 1.93591 1.70203 1.84434 1.44480 1.55406 1.48627 1.50485 1.26575 1.19561 0.79841 0.84991 0.80937 1.90938 1.67510 1.41284 1.35346 1.22100 0.99830 0.90741 0.92938 1.86155 1.37785 1.45509 1.48581 1.19137 0.86546 0.92763 0.95256 1.21418 0.96547 1.03759 0.99690 1.21067 0.96004 0.94247 0.98381 1.21158 1.00256 1.00182 0.95326 1.21001 0.92948 0.98087 0.98132 1.20448 0.99626 0.97816 0.98625 1.23456 0.89187 1.03564 0.98385 1.23739 1.01286 1.02293 0.92180 0.92537 0.94733 0.94568 0.84871 0.85923 0.73396 0.85411 0.85377 0.85626 0.85102 0.84886 0.86173 0.85654 0.85987 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 9 C 0.03 0.76 4.98 -27.89 -0.14 0.63 16 10 C -0.57 -11.71 5.80 37.16 0.22 -11.50 16 11 S 2.56 49.00 5.11 -107.50 -0.55 48.45 16 12 O -0.95 -19.80 18.08 -57.54 -1.04 -20.84 16 13 O -0.94 -20.71 17.16 -64.29 -1.10 -21.82 16 14 N -1.05 -15.42 5.00 31.22 0.16 -15.27 16 15 C 0.56 7.99 5.61 -10.99 -0.06 7.93 16 16 O -0.48 -8.07 14.45 -9.88 -0.14 -8.22 16 17 C -0.01 -0.13 1.77 -91.77 -0.16 -0.29 16 18 O -0.27 -2.84 9.78 -19.43 -0.19 -3.03 16 19 C 0.11 1.18 5.47 -39.22 -0.21 0.96 16 20 C -0.20 -2.30 8.20 -39.43 -0.32 -2.62 16 21 C -0.08 -0.85 10.04 -39.60 -0.40 -1.24 16 22 C -0.15 -1.39 10.04 -39.56 -0.40 -1.79 16 23 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 24 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 25 C -0.11 -0.85 10.08 -26.70 -0.27 -1.12 16 26 C -0.16 -1.31 9.04 -26.70 -0.24 -1.55 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.13 2.63 7.00 -51.92 -0.36 2.27 16 31 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 32 H 0.43 5.31 7.32 -34.46 -0.25 5.05 16 33 H 0.13 1.58 5.36 -52.49 -0.28 1.29 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.12 1.06 7.91 -51.93 -0.41 0.65 16 41 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -36.09 364.08 -9.94 -46.03 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.08 Total: 5.56 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.19 Total: -26.81 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.89 Total: -41.17 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -2.48 Total: -53.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 49.00 SS G_CDS: -0.55 Total: 48.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.09 -9.94 -46.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348659501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.958 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds