Wall clock time and date at job start Tue Mar 31 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99903 * 2 1 4 4 H 1.48501 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99903 * 3 2 1 6 6 H 1.48493 * 109.47038 * 60.00284 * 3 2 1 7 7 C 1.37881 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47579 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47670 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54118 * 68.37697 * 11 10 9 13 13 O 1.42103 * 110.54130 * 291.62590 * 11 10 9 14 14 N 1.65598 * 104.44980 * 180.02562 * 11 10 9 15 15 C 1.34769 * 120.00325 * 65.00240 * 14 11 10 16 16 O 1.21281 * 119.99967 * 354.99025 * 15 14 11 17 17 C 1.50703 * 120.00140 * 174.99202 * 15 14 11 18 18 O 1.42895 * 115.54766 * 351.75990 * 17 15 14 19 19 C 1.35902 * 116.99904 * 294.36859 * 18 17 15 20 20 C 1.38727 * 120.05547 * 355.21588 * 19 18 17 21 21 C 1.38144 * 119.94415 * 179.76601 * 20 19 18 22 22 C 1.38275 * 120.05677 * 0.50778 * 21 20 19 23 23 C 1.38266 * 120.10596 * 359.74721 * 22 21 20 24 24 C 1.38147 * 120.05976 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49774 * 137.42956 * 17 15 14 26 26 C 1.52999 * 117.49903 * 206.08632 * 17 15 14 27 27 H 0.96996 * 120.00386 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 59.99898 * 9 7 2 29 29 H 1.09002 * 109.47288 * 300.00380 * 9 7 2 30 30 H 1.09003 * 109.46970 * 59.99786 * 10 9 7 31 31 H 1.09002 * 109.47116 * 300.00479 * 10 9 7 32 32 H 0.97001 * 119.99512 * 245.00075 * 14 11 10 33 33 H 1.07998 * 120.03048 * 0.02562 * 20 19 18 34 34 H 1.07996 * 119.97606 * 180.25601 * 21 20 19 35 35 H 1.07999 * 119.94749 * 179.72246 * 22 21 20 36 36 H 1.07999 * 119.97069 * 180.02562 * 23 22 21 37 37 H 1.07995 * 120.02620 * 180.02562 * 24 23 22 38 38 H 1.09007 * 117.49638 * 215.00292 * 25 17 15 39 39 H 1.09001 * 117.50343 * 0.02562 * 25 17 15 40 40 H 1.09000 * 117.50149 * 359.97438 * 26 17 15 41 41 H 1.09000 * 117.49537 * 144.97206 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2331 0.0002 12 8 0.6641 -5.4201 -1.2365 13 8 0.6648 -5.4193 1.2375 14 7 2.5206 -6.3927 0.0009 15 6 3.3470 -6.5119 1.0588 16 8 3.2850 -5.7137 1.9697 17 6 4.3482 -7.6371 1.1097 18 8 4.2192 -8.6238 0.0842 19 6 3.0903 -9.3804 0.0944 20 6 2.1735 -9.2465 1.1270 21 6 1.0244 -10.0133 1.1326 22 6 0.7927 -10.9212 0.1157 23 6 1.7075 -11.0603 -0.9117 24 6 2.8554 -10.2917 -0.9249 25 6 5.7600 -7.3050 1.5970 26 6 4.8113 -8.1088 2.4896 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 2.6182 -6.9861 -0.7602 33 1 2.3559 -8.5404 1.9235 34 1 0.3084 -9.9065 1.9339 35 1 -0.1040 -11.5230 0.1243 36 1 1.5242 -11.7698 -1.7050 37 1 3.5693 -10.4005 -1.7279 38 1 6.5905 -7.8392 1.1352 39 1 5.9646 -6.2727 1.8811 40 1 4.3921 -7.6049 3.3606 41 1 5.0171 -9.1718 2.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348659501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:04 Heat of formation + Delta-G solvation = -114.545365 kcal Electronic energy + Delta-G solvation = -27664.498099 eV Core-core repulsion = 23637.248279 eV Total energy + Delta-G solvation = -4027.249820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37352 -40.56934 -38.81051 -38.36397 -37.36090 -36.51198 -35.99931 -35.51455 -33.23578 -31.94920 -30.78355 -27.72972 -26.64907 -24.11898 -23.94986 -23.62712 -23.14588 -21.83711 -20.89459 -20.21598 -19.38995 -18.51367 -18.19944 -17.45000 -17.19703 -16.98706 -16.82604 -16.57540 -16.48061 -16.27814 -15.56016 -15.30446 -15.13983 -14.99394 -14.52641 -14.39140 -14.27775 -13.97743 -13.82198 -13.49599 -13.39115 -13.06092 -12.99792 -12.89094 -12.73707 -12.61640 -12.44978 -12.40462 -12.29102 -12.09391 -11.99933 -11.80749 -11.42946 -11.34569 -11.12505 -10.68787 -10.01446 -9.30822 -8.29634 -6.44158 -1.14979 0.31494 0.37268 0.58076 1.21394 1.39696 1.40834 1.54342 1.64997 2.33766 2.43382 2.49845 2.71173 2.79996 3.00872 3.04064 3.33999 3.59367 3.63354 3.83620 3.90861 3.92275 3.94630 4.18016 4.26761 4.43905 4.51240 4.57391 4.61097 4.71555 4.80240 5.02588 5.02965 5.15686 5.16251 5.24650 5.31960 5.43663 5.55603 5.63716 5.73377 5.99299 6.04622 6.25822 6.68269 7.26004 8.83142 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.003237 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.081384 B = 8649.107573 C = 9532.479403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.977 3.023 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.023 3.977 10 C -0.574 4.574 11 S 2.591 3.409 12 O -0.969 6.969 13 O -0.971 6.971 14 N -1.037 6.037 15 C 0.558 3.442 16 O -0.510 6.510 17 C -0.030 4.030 18 O -0.261 6.261 19 C 0.093 3.907 20 C -0.216 4.216 21 C -0.100 4.100 22 C -0.155 4.155 23 C -0.082 4.082 24 C -0.150 4.150 25 C -0.087 4.087 26 C -0.148 4.148 27 H 0.269 0.731 28 H 0.015 0.985 29 H 0.007 0.993 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.442 0.558 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -24.543 -0.126 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.800 3.200 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.016 4.016 10 C -0.708 4.708 11 S 2.691 3.309 12 O -0.959 6.959 13 O -0.961 6.961 14 N -0.802 5.802 15 C 0.346 3.654 16 O -0.383 6.383 17 C -0.075 4.075 18 O -0.175 6.175 19 C 0.048 3.952 20 C -0.235 4.235 21 C -0.118 4.118 22 C -0.173 4.173 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.124 4.124 26 C -0.186 4.186 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.281 0.719 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.460 -24.119 0.408 26.706 hybrid contribution 0.007 1.145 -0.141 1.154 sum 11.467 -22.973 0.267 25.677 Atomic orbital electron populations 1.70098 1.08056 1.28438 1.50588 1.26135 0.95926 1.03923 0.94155 0.85215 0.79096 0.77707 0.77938 1.17966 1.20008 1.20313 1.21480 0.93979 0.90508 1.51961 0.90634 1.18853 0.93405 0.92670 0.96713 1.30239 1.12888 1.14916 1.12749 1.05715 0.74830 0.76984 0.73406 1.93560 1.71362 1.85491 1.45512 1.93545 1.71604 1.84955 1.46010 1.54936 1.48054 1.49527 1.27635 1.20294 0.79763 0.85536 0.79836 1.90921 1.68408 1.42826 1.36187 1.22084 1.00538 0.90117 0.94735 1.86173 1.37534 1.45147 1.48609 1.19342 0.86677 0.93499 0.95635 1.21425 0.97592 1.04354 1.00089 1.21287 0.96086 0.95020 0.99391 1.21483 1.01206 0.99723 0.94869 1.21419 0.92139 0.97962 0.98415 1.20800 1.00306 0.97173 0.98558 1.23702 0.88171 1.03983 0.96553 1.23854 1.00578 1.03528 0.90590 0.92229 0.96718 0.97510 0.84193 0.83066 0.71871 0.86830 0.85162 0.83517 0.82046 0.82900 0.83328 0.85512 0.86805 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.98 43.80 29.54 68.60 2.03 45.83 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.02 1.23 4.98 29.84 0.15 1.38 16 10 C -0.57 -23.73 5.80 71.98 0.42 -23.31 16 11 S 2.59 101.31 5.11 -56.49 -0.29 101.02 16 12 O -0.97 -41.01 18.08 -127.65 -2.31 -43.32 16 13 O -0.97 -44.65 17.16 -121.20 -2.08 -46.73 16 14 N -1.04 -30.25 5.00 -173.54 -0.87 -31.12 16 15 C 0.56 15.72 5.61 87.66 0.49 16.21 16 16 O -0.51 -17.37 14.45 11.73 0.17 -17.20 16 17 C -0.03 -0.60 1.77 -11.54 -0.02 -0.62 16 18 O -0.26 -5.07 9.78 -92.44 -0.90 -5.98 16 19 C 0.09 1.91 5.47 22.51 0.12 2.04 16 20 C -0.22 -5.04 8.20 22.36 0.18 -4.85 16 21 C -0.10 -2.12 10.04 22.26 0.22 -1.90 16 22 C -0.15 -2.61 10.04 22.29 0.22 -2.39 16 23 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 24 C -0.15 -2.50 9.99 22.37 0.22 -2.27 16 25 C -0.09 -1.13 10.08 30.62 0.31 -0.82 16 26 C -0.15 -2.22 9.04 30.62 0.28 -1.95 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.14 5.59 7.00 -2.39 -0.02 5.57 16 31 H 0.15 5.26 8.14 -2.39 -0.02 5.24 16 32 H 0.44 10.61 7.32 -96.75 -0.71 9.90 16 33 H 0.11 2.89 5.36 -2.91 -0.02 2.87 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.15 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.92 7.91 -2.39 -0.02 1.90 16 41 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -79.93 364.08 -0.09 -80.02 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.36 Total: 24.06 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 3.52 Total: -49.63 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -0.58 Total: -88.07 kcal Atomic # 8 Polarization: -108.10 SS G_CDS: -5.12 Total: -113.22 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 101.31 SS G_CDS: -0.29 Total: 101.02 kcal Total: -79.93 -0.09 -80.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348659501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.525 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds