Wall clock time and date at job start Tue Mar 31 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99962 * 3 2 1 5 5 H 1.48494 * 109.46959 * 29.99829 * 3 2 1 6 6 H 1.48500 * 109.47194 * 149.99794 * 3 2 1 7 7 C 1.38695 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00380 * 0.02562 * 7 2 1 9 9 O 1.34815 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.35517 * 117.00556 * 174.93156 * 9 7 2 11 11 C 1.38838 * 120.16091 * 5.58596 * 10 9 7 12 12 C 1.38026 * 120.07573 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.39702 * 0.02562 * 12 11 10 14 14 C 1.37820 * 120.32729 * 359.97438 * 13 12 11 15 15 C 1.39667 * 119.92130 * 359.70678 * 14 13 12 16 16 C 1.47532 * 120.20241 * 180.29517 * 15 14 13 17 17 O 1.21593 * 120.00268 * 180.27032 * 16 15 14 18 18 N 1.34782 * 119.99629 * 0.27385 * 16 15 14 19 19 C 1.46496 * 119.99721 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47327 * 179.97438 * 19 18 16 21 21 S 1.81393 * 109.47432 * 180.02562 * 20 19 18 22 22 O 1.42108 * 108.58055 * 294.48954 * 21 20 19 23 23 O 1.42099 * 108.57811 * 65.51490 * 21 20 19 24 24 C 1.81402 * 101.92362 * 180.02562 * 21 20 19 25 25 C 1.52990 * 117.49967 * 253.74730 * 24 21 20 26 26 C 1.52997 * 117.49901 * 185.08733 * 24 21 20 27 27 H 0.96999 * 120.00022 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.95912 * 359.95742 * 11 10 9 29 29 H 1.07992 * 119.79862 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.83481 * 179.97438 * 13 12 11 31 31 H 1.08003 * 120.04354 * 179.97438 * 14 13 12 32 32 H 0.97000 * 120.00307 * 359.97438 * 18 16 15 33 33 H 1.08997 * 109.47446 * 300.00009 * 19 18 16 34 34 H 1.09006 * 109.47479 * 60.00083 * 19 18 16 35 35 H 1.08997 * 109.47157 * 300.00544 * 20 19 18 36 36 H 1.09001 * 109.46435 * 60.00310 * 20 19 18 37 37 H 1.09004 * 115.54881 * 39.41818 * 24 21 20 38 38 H 1.09000 * 117.50105 * 0.02562 * 25 24 21 39 39 H 1.09006 * 117.50007 * 145.02072 * 25 24 21 40 40 H 1.09008 * 117.49457 * 214.97773 * 26 24 21 41 41 H 1.09000 * 117.50095 * 359.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0086 -1.2011 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3568 -1.2012 0.0000 10 6 3.9721 -2.4039 0.1073 11 6 3.2243 -3.5736 0.0948 12 6 3.8529 -4.7976 0.2036 13 6 5.2313 -4.8695 0.3264 14 6 5.9896 -3.7188 0.3406 15 6 5.3681 -2.4734 0.2247 16 6 6.1745 -1.2379 0.2327 17 8 5.6292 -0.1554 0.1365 18 7 7.5156 -1.3093 0.3465 19 6 8.3163 -0.0826 0.3539 20 6 9.7972 -0.4409 0.4936 21 16 10.7887 1.0780 0.5035 22 8 10.6719 1.7032 -0.7673 23 8 10.4698 1.8192 1.6732 24 6 12.4727 0.4253 0.6733 25 6 13.1592 0.5864 2.0309 26 6 13.6087 1.4364 0.8400 27 1 -0.4850 0.8400 -0.0004 28 1 2.1495 -3.5257 0.0001 29 1 3.2669 -5.7047 0.1929 30 1 5.7137 -5.8321 0.4113 31 1 7.0636 -3.7801 0.4369 32 1 7.9506 -2.1729 0.4236 33 1 8.1597 0.4592 -0.5788 34 1 8.0138 0.5439 1.1931 35 1 9.9535 -0.9825 1.4265 36 1 10.1000 -1.0675 -0.3454 37 1 12.6849 -0.4812 0.1064 38 1 12.5989 1.0842 2.8224 39 1 13.8235 -0.2139 2.3572 40 1 14.5685 1.1948 0.3831 41 1 13.3444 2.4939 0.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361512574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:52 Heat of formation + Delta-G solvation = -68.289008 kcal Electronic energy + Delta-G solvation = -26428.914889 eV Core-core repulsion = 22403.670895 eV Total energy + Delta-G solvation = -4025.243994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.84850 -38.39315 -37.72289 -37.14963 -36.56902 -36.34895 -35.16092 -32.46945 -31.66645 -29.95506 -29.23690 -25.44469 -24.87477 -23.61754 -23.16665 -22.53879 -21.24127 -20.33661 -19.14479 -17.99496 -17.96554 -17.80062 -16.60360 -16.54278 -16.15413 -15.89581 -15.43132 -15.16580 -14.72163 -14.42311 -14.20676 -14.06876 -13.98566 -13.71927 -13.41479 -12.96011 -12.54107 -12.51444 -12.37617 -12.36148 -12.18335 -12.17093 -11.98888 -11.69753 -11.65278 -11.41623 -11.35679 -11.28930 -10.89106 -10.83111 -10.72786 -10.02272 -9.65258 -9.12685 -8.91529 -8.88264 -8.42820 -7.51456 -6.48243 -4.13655 -0.44370 1.52600 2.15036 2.29756 2.63821 3.12849 3.34169 3.39036 3.50588 3.52471 3.68725 3.71242 3.98060 4.11322 4.13231 4.26196 4.36340 4.46531 4.53718 4.69756 4.92437 4.96470 4.99179 5.08110 5.21414 5.23277 5.33110 5.36748 5.44785 5.55447 5.64607 5.90644 5.99889 6.33369 6.49410 6.59234 6.78069 6.96654 7.11195 7.44690 7.64283 7.83369 7.93205 8.76894 8.87127 9.49211 10.56527 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002897 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.048416 B = 9661.579106 C =11395.667663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.397 4.397 8 H 0.109 0.891 9 O -0.164 6.164 10 C 0.201 3.799 11 C -0.226 4.226 12 C -0.050 4.050 13 C -0.222 4.222 14 C -0.041 4.041 15 C -0.227 4.227 16 C 0.559 3.441 17 O -0.513 6.513 18 N -0.737 5.737 19 C 0.135 3.865 20 C -0.627 4.627 21 S 2.455 3.545 22 O -0.927 6.927 23 O -0.928 6.928 24 C -0.674 4.674 25 C -0.128 4.128 26 C -0.125 4.125 27 H 0.282 0.718 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.397 0.603 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.549 -5.308 2.834 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.157 1.157 7 C -0.472 4.472 8 H 0.126 0.874 9 O -0.064 6.064 10 C 0.143 3.857 11 C -0.245 4.245 12 C -0.069 4.069 13 C -0.241 4.241 14 C -0.060 4.060 15 C -0.232 4.232 16 C 0.350 3.650 17 O -0.388 6.388 18 N -0.394 5.394 19 C 0.010 3.990 20 C -0.755 4.755 21 S 2.635 3.365 22 O -0.924 6.924 23 O -0.925 6.925 24 C -0.782 4.782 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 25.707 -3.213 2.670 26.044 hybrid contribution 0.610 -1.049 -0.131 1.221 sum 26.317 -4.262 2.539 26.780 Atomic orbital electron populations 1.69633 1.05836 1.29043 1.45833 1.24501 0.94978 0.99363 0.94489 0.86247 0.81550 0.80355 0.79744 1.19851 1.21153 1.15740 1.20930 0.77054 0.96791 1.52400 0.87401 1.83776 1.22165 1.24995 1.75440 1.19017 0.90253 0.85851 0.90578 1.21293 1.01407 0.91614 1.10178 1.20969 0.94378 0.96782 0.94731 1.20527 0.94034 0.97274 1.12263 1.20738 0.98031 0.91281 0.95905 1.18778 0.91128 0.92643 1.20672 1.18264 0.80886 0.89610 0.76281 1.90885 1.70843 1.29321 1.47725 1.45780 1.06738 1.08194 1.78659 1.20797 0.84985 0.89203 1.04044 1.30593 1.09635 1.23090 1.12179 1.06986 0.76956 0.77164 0.75430 1.93618 1.84971 1.71805 1.42017 1.93607 1.82040 1.66869 1.50001 1.32235 1.19577 1.14312 1.12036 1.22939 1.01525 1.02959 0.89119 1.22802 0.96472 0.95970 1.01041 0.90762 0.84360 0.86792 0.87004 0.86923 0.76784 0.90011 0.89970 0.84110 0.84273 0.82314 0.86042 0.86908 0.86724 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.30 13.96 55.48 0.77 -24.53 16 2 C 0.07 2.10 5.49 -17.52 -0.10 2.00 16 3 Si 0.90 23.37 28.62 -169.99 -4.86 18.50 16 4 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.23 -6.46 6.95 56.52 0.39 -6.07 16 7 C -0.40 -11.36 9.95 30.90 0.31 -11.05 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.16 -4.51 6.67 -21.05 -0.14 -4.65 16 10 C 0.20 4.72 6.66 -38.60 -0.26 4.47 16 11 C -0.23 -4.71 9.16 -39.44 -0.36 -5.07 16 12 C -0.05 -0.84 10.03 -39.54 -0.40 -1.23 16 13 C -0.22 -3.33 10.02 -39.61 -0.40 -3.72 16 14 C -0.04 -0.63 9.53 -39.20 -0.37 -1.00 16 15 C -0.23 -4.55 5.89 -104.81 -0.62 -5.17 16 16 C 0.56 11.29 7.76 -12.47 -0.10 11.19 16 17 O -0.51 -12.86 15.01 -16.57 -0.25 -13.11 16 18 N -0.74 -10.51 5.51 -61.35 -0.34 -10.84 16 19 C 0.14 1.75 5.68 -4.04 -0.02 1.72 16 20 C -0.63 -4.50 5.92 37.16 0.22 -4.28 16 21 S 2.46 21.30 5.11 -107.50 -0.55 20.75 16 22 O -0.93 -11.74 18.10 -57.83 -1.05 -12.79 16 23 O -0.93 -11.09 17.25 -57.83 -1.00 -12.09 16 24 C -0.67 -3.47 6.25 -26.74 -0.17 -3.63 16 25 C -0.13 -0.58 10.12 -26.70 -0.27 -0.85 16 26 C -0.12 -0.63 10.30 -26.70 -0.27 -0.90 16 27 H 0.28 7.62 8.31 -40.82 -0.34 7.29 16 28 H 0.14 3.00 5.64 -52.49 -0.30 2.70 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.11 1.24 6.40 -52.48 -0.34 0.90 16 32 H 0.40 4.09 6.50 -40.82 -0.27 3.82 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.14 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.16 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.12 0.60 7.58 -51.93 -0.39 0.21 16 39 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -39.02 365.28 -9.66 -48.68 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.95 Total: 2.11 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.80 Total: -17.53 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.44 Total: -35.37 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.43 Total: -42.64 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.86 Total: 18.50 kcal Atomic # 16 Polarization: 21.30 SS G_CDS: -0.55 Total: 20.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.02 -9.66 -48.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361512574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -39.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds