Wall clock time and date at job start Tue Mar 31 2020 22:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99962 * 3 2 1 5 5 H 1.48494 * 109.46959 * 29.99829 * 3 2 1 6 6 H 1.48500 * 109.47194 * 149.99794 * 3 2 1 7 7 C 1.38695 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00380 * 0.02562 * 7 2 1 9 9 O 1.34815 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.35517 * 117.00556 * 174.93156 * 9 7 2 11 11 C 1.38838 * 120.16091 * 5.58596 * 10 9 7 12 12 C 1.38026 * 120.07573 * 179.97438 * 11 10 9 13 13 C 1.38570 * 120.39702 * 0.02562 * 12 11 10 14 14 C 1.37820 * 120.32729 * 359.97438 * 13 12 11 15 15 C 1.39667 * 119.92130 * 359.70678 * 14 13 12 16 16 C 1.47532 * 120.20241 * 180.29517 * 15 14 13 17 17 O 1.21593 * 120.00268 * 180.27032 * 16 15 14 18 18 N 1.34782 * 119.99629 * 0.27385 * 16 15 14 19 19 C 1.46496 * 119.99721 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47327 * 179.97438 * 19 18 16 21 21 S 1.81393 * 109.47432 * 180.02562 * 20 19 18 22 22 O 1.42108 * 108.58055 * 294.48954 * 21 20 19 23 23 O 1.42099 * 108.57811 * 65.51490 * 21 20 19 24 24 C 1.81402 * 101.92362 * 180.02562 * 21 20 19 25 25 C 1.52990 * 117.49967 * 253.74730 * 24 21 20 26 26 C 1.52997 * 117.49901 * 185.08733 * 24 21 20 27 27 H 0.96999 * 120.00022 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.95912 * 359.95742 * 11 10 9 29 29 H 1.07992 * 119.79862 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.83481 * 179.97438 * 13 12 11 31 31 H 1.08003 * 120.04354 * 179.97438 * 14 13 12 32 32 H 0.97000 * 120.00307 * 359.97438 * 18 16 15 33 33 H 1.08997 * 109.47446 * 300.00009 * 19 18 16 34 34 H 1.09006 * 109.47479 * 60.00083 * 19 18 16 35 35 H 1.08997 * 109.47157 * 300.00544 * 20 19 18 36 36 H 1.09001 * 109.46435 * 60.00310 * 20 19 18 37 37 H 1.09004 * 115.54881 * 39.41818 * 24 21 20 38 38 H 1.09000 * 117.50105 * 0.02562 * 25 24 21 39 39 H 1.09006 * 117.50007 * 145.02072 * 25 24 21 40 40 H 1.09008 * 117.49457 * 214.97773 * 26 24 21 41 41 H 1.09000 * 117.50095 * 359.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0086 -1.2011 0.0005 8 1 1.4687 -2.1365 0.0005 9 8 3.3568 -1.2012 0.0000 10 6 3.9721 -2.4039 0.1073 11 6 3.2243 -3.5736 0.0948 12 6 3.8529 -4.7976 0.2036 13 6 5.2313 -4.8695 0.3264 14 6 5.9896 -3.7188 0.3406 15 6 5.3681 -2.4734 0.2247 16 6 6.1745 -1.2379 0.2327 17 8 5.6292 -0.1554 0.1365 18 7 7.5156 -1.3093 0.3465 19 6 8.3163 -0.0826 0.3539 20 6 9.7972 -0.4409 0.4936 21 16 10.7887 1.0780 0.5035 22 8 10.6719 1.7032 -0.7673 23 8 10.4698 1.8192 1.6732 24 6 12.4727 0.4253 0.6733 25 6 13.1592 0.5864 2.0309 26 6 13.6087 1.4364 0.8400 27 1 -0.4850 0.8400 -0.0004 28 1 2.1495 -3.5257 0.0001 29 1 3.2669 -5.7047 0.1929 30 1 5.7137 -5.8321 0.4113 31 1 7.0636 -3.7801 0.4369 32 1 7.9506 -2.1729 0.4236 33 1 8.1597 0.4592 -0.5788 34 1 8.0138 0.5439 1.1931 35 1 9.9535 -0.9825 1.4265 36 1 10.1000 -1.0675 -0.3454 37 1 12.6849 -0.4812 0.1064 38 1 12.5989 1.0842 2.8224 39 1 13.8235 -0.2139 2.3572 40 1 14.5685 1.1948 0.3831 41 1 13.3444 2.4939 0.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361512574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:52 Heat of formation + Delta-G solvation = -99.267892 kcal Electronic energy + Delta-G solvation = -26430.258234 eV Core-core repulsion = 22403.670895 eV Total energy + Delta-G solvation = -4026.587339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43754 -40.00679 -38.29927 -38.17454 -37.75221 -37.14301 -36.46034 -34.53519 -32.97127 -31.17439 -30.80226 -27.34438 -25.87701 -24.63831 -23.65986 -23.44498 -22.75708 -21.80052 -19.91337 -19.78459 -19.50152 -18.47289 -18.07839 -17.35267 -17.19674 -16.85561 -16.55433 -16.37925 -15.98757 -15.92156 -15.69704 -15.55839 -15.44536 -14.86466 -14.51745 -14.44604 -14.23935 -14.03428 -13.49204 -13.30611 -13.19431 -13.15506 -12.88615 -12.85675 -12.60050 -12.54067 -12.38939 -12.21479 -12.03234 -12.01454 -11.95114 -11.55406 -11.37391 -10.98790 -10.75552 -10.28595 -9.85665 -9.15656 -8.59806 -6.28238 -1.10005 0.03432 0.64747 1.23619 1.27851 1.57045 1.72309 1.97174 2.06796 2.23510 2.27946 2.67977 2.74100 3.00842 3.13927 3.15960 3.35746 3.55463 3.70797 3.87118 3.89269 3.98285 4.02119 4.23549 4.27174 4.47729 4.47916 4.57062 4.63577 4.70848 4.72963 4.81057 4.92783 5.06058 5.07543 5.27943 5.30436 5.46879 5.61428 5.69222 5.82935 6.15461 6.57538 6.77615 7.32217 7.57728 8.50623 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002897 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.048416 B = 9661.579106 C =11395.667663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.402 4.402 8 H 0.094 0.906 9 O -0.211 6.211 10 C 0.159 3.841 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.188 4.188 14 C -0.028 4.028 15 C -0.234 4.234 16 C 0.550 3.450 17 O -0.574 6.574 18 N -0.706 5.706 19 C 0.120 3.880 20 C -0.607 4.607 21 S 2.443 3.557 22 O -0.981 6.981 23 O -0.975 6.975 24 C -0.650 4.650 25 C -0.123 4.123 26 C -0.141 4.141 27 H 0.286 0.714 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.421 0.579 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.754 -9.964 3.408 33.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.111 0.889 9 O -0.115 6.115 10 C 0.106 3.894 11 C -0.271 4.271 12 C -0.060 4.060 13 C -0.206 4.206 14 C -0.046 4.046 15 C -0.239 4.239 16 C 0.340 3.660 17 O -0.453 6.453 18 N -0.363 5.363 19 C -0.005 4.005 20 C -0.736 4.736 21 S 2.630 3.370 22 O -0.978 6.978 23 O -0.973 6.973 24 C -0.762 4.762 25 C -0.161 4.161 26 C -0.180 4.180 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.169 0.831 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.261 0.739 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.198 0.802 36 H 0.198 0.802 37 H 0.215 0.785 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 30.957 -7.908 3.248 32.116 hybrid contribution -0.556 -0.047 -0.251 0.611 sum 30.402 -7.955 2.997 31.568 Atomic orbital electron populations 1.69672 1.06344 1.29537 1.49466 1.25000 0.95607 1.01270 0.95387 0.85510 0.79296 0.78793 0.79123 1.20142 1.19008 1.18926 1.20897 0.78364 0.96280 1.52236 0.88892 1.83770 1.20847 1.27111 1.79785 1.19821 0.92195 0.85710 0.91652 1.21333 1.00583 0.92957 1.12189 1.21468 0.96066 0.96095 0.92326 1.21261 0.92926 0.99492 1.06926 1.21397 1.01037 0.89047 0.93122 1.19232 0.89881 0.94831 1.19917 1.18545 0.82730 0.88884 0.75814 1.90872 1.72494 1.31446 1.50506 1.45451 1.04787 1.09953 1.76136 1.20899 0.88631 0.88517 1.02483 1.30442 1.04406 1.22633 1.16121 1.06844 0.78812 0.77790 0.73555 1.93557 1.86474 1.73991 1.43756 1.93551 1.83646 1.69151 1.50905 1.31889 1.15299 1.15451 1.13581 1.23143 1.01145 1.03360 0.88413 1.23070 0.97322 0.95679 1.01894 0.90443 0.86801 0.83127 0.81272 0.81034 0.73902 0.91955 0.91942 0.80187 0.80223 0.78506 0.87083 0.83950 0.84367 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.47 13.96 21.62 0.30 -56.17 16 2 C 0.03 1.72 5.49 84.85 0.47 2.18 16 3 Si 0.95 52.04 28.62 68.60 1.96 54.00 16 4 H -0.28 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.26 -15.69 6.95 99.48 0.69 -15.00 16 7 C -0.40 -24.84 9.95 67.93 0.68 -24.16 16 8 H 0.09 5.78 5.44 -2.91 -0.02 5.76 16 9 O -0.21 -12.45 6.67 0.87 0.01 -12.44 16 10 C 0.16 7.71 6.66 22.91 0.15 7.86 16 11 C -0.25 -10.59 9.16 22.36 0.20 -10.39 16 12 C -0.04 -1.22 10.03 22.30 0.22 -0.99 16 13 C -0.19 -4.28 10.02 22.25 0.22 -4.05 16 14 C -0.03 -0.69 9.53 22.52 0.21 -0.47 16 15 C -0.23 -9.00 5.89 -19.99 -0.12 -9.12 16 16 C 0.55 22.07 7.76 86.69 0.67 22.74 16 17 O -0.57 -30.37 15.01 16.89 0.25 -30.12 16 18 N -0.71 -18.20 5.51 -466.27 -2.57 -20.77 16 19 C 0.12 2.99 5.68 86.38 0.49 3.48 16 20 C -0.61 -6.45 5.92 71.98 0.43 -6.02 16 21 S 2.44 39.88 5.11 -56.49 -0.29 39.59 16 22 O -0.98 -25.41 18.10 -127.37 -2.31 -27.71 16 23 O -0.98 -23.97 17.25 -127.37 -2.20 -26.16 16 24 C -0.65 -4.19 6.25 30.59 0.19 -4.00 16 25 C -0.12 -0.66 10.12 30.61 0.31 -0.35 16 26 C -0.14 -1.03 10.30 30.62 0.32 -0.72 16 27 H 0.29 16.36 8.31 -92.71 -0.77 15.59 16 28 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 29 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.17 2.23 6.40 -2.91 -0.02 2.21 16 32 H 0.42 6.20 6.50 -92.71 -0.60 5.59 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.18 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.20 -0.19 8.14 -2.38 -0.02 -0.21 16 38 H 0.11 0.87 7.58 -2.39 -0.02 0.86 16 39 H 0.14 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.14 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -99.34 365.28 0.08 -99.26 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 0.46 Total: 4.54 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.45 Total: -24.01 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.27 Total: -76.94 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -4.24 Total: -96.44 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.96 Total: 54.00 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.29 Total: 39.59 kcal Total: -99.34 0.08 -99.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361512574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.006 kcal (2) G-P(sol) polarization free energy of solvation -99.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds