Wall clock time and date at job start Tue Mar 31 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47277 * 300.00107 * 3 2 1 6 6 H 1.48500 * 109.46987 * 59.99974 * 3 2 1 7 7 C 1.37878 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00283 * 185.01082 * 7 2 1 9 9 C 1.50695 * 119.99883 * 5.01347 * 7 2 1 10 10 H 1.09001 * 109.47475 * 24.64612 * 9 7 2 11 11 C 1.50699 * 109.47607 * 144.64696 * 9 7 2 12 12 O 1.21280 * 120.00136 * 119.99576 * 11 9 7 13 13 N 1.34776 * 119.99900 * 300.00303 * 11 9 7 14 14 C 1.43221 * 122.12525 * 179.97438 * 13 11 9 15 15 C 1.56037 * 112.69537 * 283.97488 * 14 13 11 16 16 S 1.83133 * 107.40139 * 321.37260 * 15 14 13 17 17 O 1.42108 * 108.14629 * 206.70736 * 16 15 14 18 18 O 1.42099 * 107.96213 * 76.97233 * 16 15 14 19 19 C 1.78973 * 104.86590 * 321.87791 * 16 15 14 20 20 C 1.53835 * 107.85639 * 92.14947 * 19 16 15 21 21 O 1.34695 * 111.87781 * 280.80132 * 20 19 16 22 22 C 1.50697 * 109.47178 * 264.64598 * 9 7 2 23 23 C 1.38233 * 120.00197 * 304.90957 * 22 9 7 24 24 C 1.38232 * 120.00216 * 179.81053 * 23 22 9 25 25 C 1.38241 * 119.99878 * 0.39374 * 24 23 22 26 26 C 1.38235 * 120.00041 * 359.85632 * 25 24 23 27 27 C 1.38234 * 119.99665 * 359.95888 * 26 25 24 28 28 H 0.97005 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.09003 * 108.81351 * 44.76515 * 14 13 11 30 30 H 1.08996 * 108.82298 * 163.16877 * 14 13 11 31 31 H 1.08996 * 109.88100 * 80.91644 * 15 14 13 32 32 H 1.09003 * 109.87842 * 201.98811 * 15 14 13 33 33 H 1.08999 * 109.79004 * 332.56301 * 19 16 15 34 34 H 1.09001 * 109.83319 * 211.76310 * 19 16 15 35 35 H 1.09002 * 108.99559 * 160.18308 * 20 19 16 36 36 H 1.09000 * 108.93470 * 41.37618 * 20 19 16 37 37 H 1.08004 * 120.00074 * 359.97438 * 23 22 9 38 38 H 1.08006 * 120.00419 * 180.23058 * 24 23 22 39 39 H 1.07997 * 119.99924 * 179.83910 * 25 24 23 40 40 H 1.08001 * 119.99862 * 179.97438 * 26 25 24 41 41 H 1.07996 * 119.99733 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0822 9 6 1.2553 -2.4967 -0.1129 10 1 0.2998 -2.3244 -0.6082 11 6 2.0694 -3.4759 -0.9188 12 8 2.4186 -4.5264 -0.4236 13 7 2.4095 -3.1841 -2.1899 14 6 3.1820 -4.0806 -2.9965 15 6 4.6958 -4.0784 -2.6182 16 16 5.1614 -2.3497 -2.2326 17 8 6.5497 -2.1963 -2.4948 18 8 4.6719 -2.0433 -0.9343 19 6 4.2588 -1.3561 -3.4163 20 6 2.9206 -0.9549 -2.7723 21 8 2.0202 -1.9555 -2.8211 22 6 1.0132 -3.0585 1.2643 23 6 2.0762 -3.2640 2.1237 24 6 1.8536 -3.7757 3.3884 25 6 0.5688 -4.0895 3.7908 26 6 -0.4937 -3.8888 2.9295 27 6 -0.2714 -3.3735 1.6662 28 1 -0.4850 0.8401 0.0004 29 1 2.7903 -5.0904 -2.8735 30 1 3.0803 -3.7895 -4.0420 31 1 4.8609 -4.7109 -1.7461 32 1 5.2883 -4.4417 -3.4580 33 1 4.0738 -1.9364 -4.3203 34 1 4.8323 -0.4625 -3.6626 35 1 2.5186 -0.0896 -3.2993 36 1 3.0960 -0.6858 -1.7307 37 1 3.0804 -3.0223 1.8080 38 1 2.6837 -3.9328 4.0613 39 1 0.3952 -4.4917 4.7779 40 1 -1.4973 -4.1344 3.2437 41 1 -1.1014 -3.2172 0.9931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361684190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:22 Heat of formation + Delta-G solvation = -43.150782 kcal Electronic energy + Delta-G solvation = -29787.016938 eV Core-core repulsion = 25762.863019 eV Total energy + Delta-G solvation = -4024.153919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.87214 -38.34060 -37.39771 -36.59669 -35.74543 -34.32690 -33.50441 -31.61016 -30.98390 -29.88589 -29.43066 -27.37779 -24.52187 -23.67727 -23.24804 -21.54839 -20.60929 -19.25998 -18.61785 -17.54107 -17.19269 -17.00793 -16.20315 -15.85432 -15.75848 -15.25065 -15.15785 -14.65447 -14.31480 -14.12465 -14.00846 -13.84683 -13.48516 -13.19699 -12.81517 -12.67179 -12.38758 -12.28224 -12.14587 -11.79377 -11.68460 -11.63204 -11.55162 -11.34513 -11.06092 -10.99924 -10.53547 -10.42918 -10.28532 -10.14464 -10.03814 -9.68859 -9.18299 -8.89204 -8.73112 -8.63838 -7.90184 -7.57896 -6.23567 -4.22085 0.12681 2.14713 2.42250 2.46408 2.91579 3.12738 3.25538 3.29252 3.41607 3.77651 4.06846 4.26888 4.37194 4.58085 4.65228 4.81520 4.93015 5.06908 5.12426 5.31394 5.44802 5.63814 5.68228 5.75964 5.82108 5.86180 5.95138 6.25992 6.33414 6.40654 6.54943 6.64477 6.90047 6.95650 7.01316 7.24924 7.41798 7.49280 7.80555 7.81766 7.97212 8.03652 8.16202 8.79770 8.98578 9.36535 10.85874 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.006478 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.835448 B = 4321.290309 C = 5413.830499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.057 3.943 10 H 0.095 0.905 11 C 0.557 3.443 12 O -0.535 6.535 13 N -0.493 5.493 14 C 0.118 3.882 15 C -0.623 4.623 16 S 2.400 3.600 17 O -0.960 6.960 18 O -0.898 6.898 19 C -0.673 4.673 20 C 0.018 3.982 21 O -0.105 6.105 22 C -0.014 4.014 23 C -0.085 4.085 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.116 4.116 28 H 0.265 0.735 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -4.409 -7.303 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.696 3.304 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.120 0.880 9 C 0.036 3.964 10 H 0.113 0.887 11 C 0.352 3.648 12 O -0.411 6.411 13 N -0.278 5.278 14 C -0.006 4.006 15 C -0.753 4.753 16 S 2.582 3.418 17 O -0.957 6.957 18 O -0.895 6.895 19 C -0.802 4.802 20 C -0.063 4.063 21 O -0.100 6.100 22 C -0.015 4.015 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.166 4.166 26 C -0.151 4.151 27 C -0.134 4.134 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.349 -4.528 -6.468 9.014 hybrid contribution 0.300 1.005 -0.741 1.284 sum 4.649 -3.523 -7.209 9.274 Atomic orbital electron populations 1.69920 1.05914 1.27031 1.47949 1.24967 0.94747 0.98955 0.94356 0.86877 0.81189 0.83961 0.78373 1.18574 1.20478 1.20459 1.21300 0.95089 0.87670 1.50675 0.88008 1.18074 0.97954 0.92097 0.88277 0.88678 1.22260 0.77813 0.86896 0.77800 1.90639 1.56395 1.27199 1.66861 1.50492 1.56513 1.07723 1.13039 1.21182 0.86433 0.96952 0.96065 1.31454 1.06289 1.24951 1.12655 1.08696 0.75839 0.79051 0.78234 1.93529 1.30136 1.85634 1.86415 1.93686 1.80524 1.81934 1.33376 1.31133 1.14444 1.16705 1.17928 1.22304 0.86996 0.91492 1.05479 1.89378 1.36203 1.13851 1.70526 1.20014 0.92217 0.92084 0.97184 1.20946 0.99419 0.97139 0.92825 1.20966 0.96244 1.01494 0.96668 1.20798 0.93310 1.03567 0.98953 1.20885 0.97821 1.01673 0.94751 1.20980 0.96907 0.99420 0.96142 0.92544 0.87949 0.88400 0.83935 0.84602 0.84766 0.83618 0.85344 0.85219 0.86467 0.87637 0.87821 0.87639 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.40 12.83 55.43 0.71 -21.69 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 3 Si 0.87 19.16 28.59 -169.99 -4.86 14.30 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -12.34 4.34 -34.44 -0.15 -12.49 16 8 H 0.10 2.54 4.68 -52.48 -0.25 2.30 16 9 C 0.06 1.33 2.05 -94.08 -0.19 1.14 16 10 H 0.10 2.37 7.11 -51.93 -0.37 2.00 16 11 C 0.56 11.93 5.95 -10.99 -0.07 11.86 16 12 O -0.54 -12.08 15.32 5.56 0.09 -12.00 16 13 N -0.49 -8.70 2.16 -60.78 -0.13 -8.83 16 14 C 0.12 1.54 5.08 -4.15 -0.02 1.52 16 15 C -0.62 -7.60 7.02 38.78 0.27 -7.33 16 16 S 2.40 36.39 4.97 -107.50 -0.53 35.86 16 17 O -0.96 -16.56 18.07 -57.89 -1.05 -17.61 16 18 O -0.90 -17.67 12.36 -57.89 -0.72 -18.39 16 19 C -0.67 -8.28 5.93 37.59 0.22 -8.05 16 20 C 0.02 0.29 5.88 37.59 0.22 0.51 16 21 O -0.10 -1.82 9.95 6.96 0.07 -1.75 16 22 C -0.01 -0.32 4.32 -104.63 -0.45 -0.78 16 23 C -0.09 -1.93 8.25 -39.59 -0.33 -2.25 16 24 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 25 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 27 C -0.12 -2.52 9.67 -39.58 -0.38 -2.90 16 28 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.10 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.10 0.91 7.20 -51.93 -0.37 0.54 16 31 H 0.14 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.13 1.18 7.12 -51.80 -0.37 0.81 16 34 H 0.15 1.50 8.14 -51.80 -0.42 1.08 16 35 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.13 2.52 2.35 -51.93 -0.12 2.40 16 37 H 0.12 2.74 7.93 -52.48 -0.42 2.32 16 38 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.35 7.95 -52.49 -0.42 1.93 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -31.80 336.82 -8.32 -40.12 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.82 Total: 11.15 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.16 Total: -26.25 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.58 Total: -30.52 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -1.61 Total: -49.74 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.86 Total: 14.30 kcal Atomic # 16 Polarization: 36.39 SS G_CDS: -0.53 Total: 35.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.80 -8.32 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361684190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds