Wall clock time and date at job start Tue Mar 31 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47277 * 300.00107 * 3 2 1 6 6 H 1.48500 * 109.46987 * 59.99974 * 3 2 1 7 7 C 1.37878 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00283 * 185.01082 * 7 2 1 9 9 C 1.50695 * 119.99883 * 5.01347 * 7 2 1 10 10 H 1.09001 * 109.47475 * 24.64612 * 9 7 2 11 11 C 1.50699 * 109.47607 * 144.64696 * 9 7 2 12 12 O 1.21280 * 120.00136 * 119.99576 * 11 9 7 13 13 N 1.34776 * 119.99900 * 300.00303 * 11 9 7 14 14 C 1.43221 * 122.12525 * 179.97438 * 13 11 9 15 15 C 1.56037 * 112.69537 * 283.97488 * 14 13 11 16 16 S 1.83133 * 107.40139 * 321.37260 * 15 14 13 17 17 O 1.42108 * 108.14629 * 206.70736 * 16 15 14 18 18 O 1.42099 * 107.96213 * 76.97233 * 16 15 14 19 19 C 1.78973 * 104.86590 * 321.87791 * 16 15 14 20 20 C 1.53835 * 107.85639 * 92.14947 * 19 16 15 21 21 O 1.34695 * 111.87781 * 280.80132 * 20 19 16 22 22 C 1.50697 * 109.47178 * 264.64598 * 9 7 2 23 23 C 1.38233 * 120.00197 * 304.90957 * 22 9 7 24 24 C 1.38232 * 120.00216 * 179.81053 * 23 22 9 25 25 C 1.38241 * 119.99878 * 0.39374 * 24 23 22 26 26 C 1.38235 * 120.00041 * 359.85632 * 25 24 23 27 27 C 1.38234 * 119.99665 * 359.95888 * 26 25 24 28 28 H 0.97005 * 119.99884 * 359.97438 * 1 2 3 29 29 H 1.09003 * 108.81351 * 44.76515 * 14 13 11 30 30 H 1.08996 * 108.82298 * 163.16877 * 14 13 11 31 31 H 1.08996 * 109.88100 * 80.91644 * 15 14 13 32 32 H 1.09003 * 109.87842 * 201.98811 * 15 14 13 33 33 H 1.08999 * 109.79004 * 332.56301 * 19 16 15 34 34 H 1.09001 * 109.83319 * 211.76310 * 19 16 15 35 35 H 1.09002 * 108.99559 * 160.18308 * 20 19 16 36 36 H 1.09000 * 108.93470 * 41.37618 * 20 19 16 37 37 H 1.08004 * 120.00074 * 359.97438 * 23 22 9 38 38 H 1.08006 * 120.00419 * 180.23058 * 24 23 22 39 39 H 1.07997 * 119.99924 * 179.83910 * 25 24 23 40 40 H 1.08001 * 119.99862 * 179.97438 * 26 25 24 41 41 H 1.07996 * 119.99733 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0822 9 6 1.2553 -2.4967 -0.1129 10 1 0.2998 -2.3244 -0.6082 11 6 2.0694 -3.4759 -0.9188 12 8 2.4186 -4.5264 -0.4236 13 7 2.4095 -3.1841 -2.1899 14 6 3.1820 -4.0806 -2.9965 15 6 4.6958 -4.0784 -2.6182 16 16 5.1614 -2.3497 -2.2326 17 8 6.5497 -2.1963 -2.4948 18 8 4.6719 -2.0433 -0.9343 19 6 4.2588 -1.3561 -3.4163 20 6 2.9206 -0.9549 -2.7723 21 8 2.0202 -1.9555 -2.8211 22 6 1.0132 -3.0585 1.2643 23 6 2.0762 -3.2640 2.1237 24 6 1.8536 -3.7757 3.3884 25 6 0.5688 -4.0895 3.7908 26 6 -0.4937 -3.8888 2.9295 27 6 -0.2714 -3.3735 1.6662 28 1 -0.4850 0.8401 0.0004 29 1 2.7903 -5.0904 -2.8735 30 1 3.0803 -3.7895 -4.0420 31 1 4.8609 -4.7109 -1.7461 32 1 5.2883 -4.4417 -3.4580 33 1 4.0738 -1.9364 -4.3203 34 1 4.8323 -0.4625 -3.6626 35 1 2.5186 -0.0896 -3.2993 36 1 3.0960 -0.6858 -1.7307 37 1 3.0804 -3.0223 1.8080 38 1 2.6837 -3.9328 4.0613 39 1 0.3952 -4.4917 4.7779 40 1 -1.4973 -4.1344 3.2437 41 1 -1.1014 -3.2172 0.9931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361684190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:22 Heat of formation + Delta-G solvation = -64.720188 kcal Electronic energy + Delta-G solvation = -29787.952257 eV Core-core repulsion = 25762.863019 eV Total energy + Delta-G solvation = -4025.089238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34227 -39.84976 -38.92630 -37.85754 -37.02152 -35.72557 -35.15008 -32.99831 -32.50622 -31.49707 -30.70587 -28.99466 -26.10965 -24.98214 -24.62753 -23.16837 -22.12687 -20.74751 -19.81634 -18.82585 -18.74984 -18.42479 -17.72023 -17.43518 -16.99929 -16.56281 -16.42848 -16.34040 -15.78847 -15.67695 -15.37136 -15.15201 -14.94828 -14.64171 -14.15262 -13.94167 -13.93719 -13.67591 -13.46144 -13.36058 -13.27437 -13.05394 -12.79343 -12.74298 -12.72317 -12.55712 -12.13903 -11.82976 -11.68353 -11.59455 -11.38460 -11.22948 -10.89698 -10.52984 -10.46982 -10.13437 -9.52653 -9.22475 -8.10503 -6.11220 -1.00113 0.75972 0.79126 0.92261 1.34606 1.43855 1.53383 1.75221 1.86460 2.45771 2.66780 2.91678 3.07678 3.21803 3.37438 3.48620 3.66077 3.90969 4.00155 4.26939 4.32118 4.33154 4.43204 4.47978 4.56542 4.61571 4.68444 4.71367 4.89109 4.93059 5.00861 5.11814 5.20623 5.41465 5.50659 5.58299 5.81812 5.86537 5.91529 6.08495 6.30420 6.45514 6.59746 7.03311 7.27566 7.48630 8.99602 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.006478 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.835448 B = 4321.290309 C = 5413.830499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.291 1.291 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.055 3.945 10 H 0.069 0.931 11 C 0.556 3.444 12 O -0.557 6.557 13 N -0.492 5.492 14 C 0.104 3.896 15 C -0.601 4.601 16 S 2.382 3.618 17 O -0.990 6.990 18 O -0.957 6.957 19 C -0.648 4.648 20 C 0.006 3.994 21 O -0.111 6.111 22 C -0.040 4.040 23 C -0.111 4.111 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.139 4.139 28 H 0.263 0.737 29 H 0.109 0.891 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -5.253 -8.789 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.217 1.217 7 C -0.536 4.536 8 H 0.109 0.891 9 C 0.034 3.966 10 H 0.087 0.913 11 C 0.350 3.650 12 O -0.435 6.435 13 N -0.275 5.275 14 C -0.019 4.019 15 C -0.734 4.734 16 S 2.570 3.430 17 O -0.987 6.987 18 O -0.954 6.954 19 C -0.780 4.780 20 C -0.075 4.075 21 O -0.106 6.106 22 C -0.041 4.041 23 C -0.129 4.129 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.204 0.796 33 H 0.200 0.800 34 H 0.188 0.812 35 H 0.170 0.830 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.696 -5.350 -7.967 10.684 hybrid contribution 0.218 1.185 -0.318 1.246 sum 4.914 -4.165 -8.285 10.495 Atomic orbital electron populations 1.70019 1.06855 1.27236 1.50010 1.25406 0.95135 1.00939 0.94550 0.86254 0.80082 0.81549 0.78567 1.18908 1.18248 1.21743 1.21280 0.94550 0.88260 1.49510 0.89146 1.17963 0.96982 0.92687 0.88968 0.91321 1.21666 0.77897 0.86229 0.79234 1.90604 1.57242 1.27636 1.68017 1.50223 1.56253 1.08619 1.12407 1.21683 0.86006 0.96387 0.97806 1.31307 1.06297 1.21579 1.14216 1.08795 0.75504 0.80647 0.78102 1.93492 1.31961 1.86548 1.86714 1.93631 1.81155 1.83428 1.37198 1.30914 1.11409 1.17695 1.17991 1.22332 0.88741 0.91966 1.04492 1.89364 1.37435 1.14058 1.69760 1.20161 0.93202 0.93373 0.97411 1.20895 0.98249 0.99284 0.94467 1.21310 0.98104 1.00325 0.95813 1.21248 0.92218 1.02114 1.00447 1.21290 0.99867 0.99992 0.93560 1.21129 0.96213 1.00717 0.97644 0.92785 0.87295 0.83375 0.85218 0.79577 0.80020 0.81182 0.82999 0.88615 0.88736 0.85028 0.83665 0.84254 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.09 12.83 21.45 0.28 -47.82 16 2 C 0.04 2.08 5.29 84.66 0.45 2.53 16 3 Si 0.91 40.14 28.59 68.60 1.96 42.10 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.50 -25.20 4.34 25.60 0.11 -25.08 16 8 H 0.09 4.79 4.68 -2.91 -0.01 4.78 16 9 C 0.06 2.70 2.05 -13.04 -0.03 2.68 16 10 H 0.07 3.65 7.11 -2.39 -0.02 3.63 16 11 C 0.56 24.50 5.95 87.66 0.52 25.02 16 12 O -0.56 -25.97 15.32 -3.03 -0.05 -26.01 16 13 N -0.49 -17.01 2.16 -464.60 -1.00 -18.01 16 14 C 0.10 2.40 5.08 88.04 0.45 2.85 16 15 C -0.60 -13.06 7.02 73.04 0.51 -12.54 16 16 S 2.38 69.55 4.97 -56.49 -0.28 69.27 16 17 O -0.99 -33.20 18.07 -127.31 -2.30 -35.50 16 18 O -0.96 -39.07 12.36 -127.31 -1.57 -40.64 16 19 C -0.65 -13.77 5.93 72.26 0.43 -13.34 16 20 C 0.01 0.17 5.88 72.26 0.42 0.60 16 21 O -0.11 -3.73 9.95 26.17 0.26 -3.47 16 22 C -0.04 -1.97 4.32 -19.87 -0.09 -2.05 16 23 C -0.11 -5.21 8.25 22.27 0.18 -5.02 16 24 C -0.14 -5.40 10.05 22.27 0.22 -5.18 16 25 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 26 C -0.13 -4.81 10.05 22.27 0.22 -4.58 16 27 C -0.14 -6.17 9.67 22.27 0.22 -5.95 16 28 H 0.26 13.40 8.31 -92.70 -0.77 12.63 16 29 H 0.11 2.48 7.93 -2.39 -0.02 2.46 16 30 H 0.15 1.94 7.20 -2.39 -0.02 1.92 16 31 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.19 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.18 2.10 7.12 -2.47 -0.02 2.09 16 34 H 0.17 2.86 8.14 -2.47 -0.02 2.84 16 35 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.10 3.74 2.35 -2.39 -0.01 3.74 16 37 H 0.09 4.75 7.93 -2.91 -0.02 4.73 16 38 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.11 4.73 7.95 -2.91 -0.02 4.70 16 Total: -1.00 -75.27 336.82 2.21 -73.06 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 1.07 Total: 31.90 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 3.85 Total: -44.86 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.73 Total: -65.83 kcal Atomic # 8 Polarization: -101.97 SS G_CDS: -3.66 Total: -105.63 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.96 Total: 42.10 kcal Atomic # 16 Polarization: 69.55 SS G_CDS: -0.28 Total: 69.27 kcal Total: -75.27 2.21 -73.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361684190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.336 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds