Wall clock time and date at job start Tue Mar 31 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99686 * 2 1 4 4 H 1.48500 * 109.46839 * 239.99632 * 3 2 1 5 5 H 1.48498 * 109.46875 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99892 * 3 2 1 7 7 C 1.37875 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00207 * 90.00371 * 10 9 7 12 12 C 1.50696 * 109.47436 * 89.99937 * 11 10 9 13 13 C 1.34512 * 125.79090 * 90.02309 * 12 11 10 14 14 C 1.41379 * 106.84332 * 180.02562 * 13 12 11 15 15 C 1.34512 * 106.84086 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.79037 * 270.02905 * 12 11 10 17 17 C 1.34786 * 119.99735 * 270.00463 * 10 9 7 18 18 O 1.21277 * 120.00369 * 359.97438 * 17 10 9 19 19 C 1.50698 * 119.99524 * 180.02562 * 17 10 9 20 20 C 1.52999 * 109.46960 * 179.97438 * 19 17 10 21 21 H 1.08997 * 109.41092 * 304.85480 * 20 19 17 22 22 C 1.49579 * 109.41231 * 64.65744 * 20 19 17 23 23 C 1.30330 * 119.15544 * 138.72764 * 22 20 19 24 24 S 1.77796 * 107.56664 * 359.67040 * 23 22 20 25 25 O 1.42102 * 105.57066 * 230.90137 * 24 23 22 26 26 O 1.42095 * 105.60658 * 100.44542 * 24 23 22 27 27 C 1.54940 * 109.41586 * 184.99613 * 20 19 17 28 28 H 0.96995 * 120.00485 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46972 * 60.00263 * 9 7 2 30 30 H 1.08993 * 109.47459 * 300.00044 * 9 7 2 31 31 H 1.09003 * 109.46817 * 329.99844 * 11 10 9 32 32 H 1.09005 * 109.46911 * 210.00399 * 11 10 9 33 33 H 1.08007 * 126.58045 * 0.02562 * 13 12 11 34 34 H 1.07997 * 126.58312 * 179.97438 * 14 13 12 35 35 H 1.07998 * 125.79383 * 179.97438 * 15 14 13 36 36 H 1.08996 * 109.47454 * 299.99512 * 19 17 10 37 37 H 1.09005 * 109.47536 * 59.99702 * 19 17 10 38 38 H 1.07999 * 120.42402 * 318.70021 * 22 20 19 39 39 H 1.08004 * 126.21545 * 179.67206 * 23 22 20 40 40 H 1.09001 * 111.34008 * 332.46720 * 27 20 19 41 41 H 1.09007 * 111.33503 * 97.12539 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 2.6792 -4.1683 1.2719 12 6 1.7625 -5.2821 1.7079 13 6 1.8984 -6.5823 1.3909 14 6 0.8262 -7.2682 2.0064 15 6 0.0990 -6.3461 2.6622 16 8 0.6714 -5.1451 2.4787 17 6 2.6412 -4.1258 -1.1642 18 8 2.2468 -3.6661 -2.2149 19 6 3.6201 -5.2715 -1.1631 20 6 3.9512 -5.6607 -2.6052 21 1 3.0284 -5.8799 -3.1423 22 6 4.6583 -4.5263 -3.2764 23 6 5.6722 -4.7816 -4.0546 24 16 5.9137 -6.5430 -4.0610 25 8 7.2911 -6.7403 -3.7729 26 8 5.3233 -7.0054 -5.2680 27 6 4.8575 -6.9174 -2.6044 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 2.6869 -3.3860 2.0308 32 1 3.6887 -4.5583 1.1418 33 1 2.6771 -7.0186 0.7828 34 1 0.6285 -8.3288 1.9584 35 1 -0.7935 -6.5388 3.2391 36 1 4.5326 -4.9694 -0.6493 37 1 3.1794 -6.1256 -0.6487 38 1 4.3327 -3.5088 -3.1186 39 1 6.2591 -4.0550 -4.5970 40 1 5.4490 -6.9793 -1.6910 41 1 4.2755 -7.8262 -2.7587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362093998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:50 Heat of formation + Delta-G solvation = -54.476268 kcal Electronic energy + Delta-G solvation = -27417.108951 eV Core-core repulsion = 23392.463922 eV Total energy + Delta-G solvation = -4024.645029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.46909 -39.77653 -37.46236 -37.09322 -36.01503 -35.35870 -33.15382 -32.68761 -31.63476 -30.32599 -28.98630 -27.17258 -25.62698 -23.95338 -22.48972 -21.65829 -20.72791 -20.53541 -19.13238 -18.60116 -17.49876 -17.30009 -16.84548 -16.45985 -16.29478 -15.83397 -15.60324 -15.39031 -14.92244 -14.66013 -14.56103 -14.21220 -13.81311 -13.21113 -13.11023 -12.90795 -12.78585 -12.63744 -12.58140 -12.37550 -12.26567 -12.14349 -12.12233 -11.71830 -11.51703 -11.28760 -11.04710 -10.81724 -10.66951 -10.54270 -10.27798 -10.15093 -9.87008 -9.82678 -9.18525 -8.54291 -8.46225 -7.98994 -6.14078 -4.20082 -0.07217 1.35275 1.77303 2.51251 2.62180 2.95417 3.22960 3.25365 3.30718 3.33489 3.39551 3.63943 3.95671 4.04450 4.21506 4.36114 4.67079 4.76617 4.79272 4.92483 4.98383 5.01789 5.07094 5.19009 5.21176 5.28808 5.42695 5.54693 5.65555 5.72466 5.79160 5.82128 5.94150 6.12625 6.15577 6.52894 6.85085 7.19064 7.29791 7.34138 7.80158 8.09157 8.11954 8.68202 8.85841 9.45394 10.94168 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.004154 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.772025 B = 6738.188501 C = 9400.038328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.246 3.754 10 N -0.589 5.589 11 C 0.183 3.817 12 C -0.015 4.015 13 C -0.216 4.216 14 C -0.218 4.218 15 C -0.041 4.041 16 O -0.164 6.164 17 C 0.506 3.494 18 O -0.532 6.532 19 C -0.141 4.141 20 C -0.070 4.070 21 H 0.129 0.871 22 C -0.023 4.023 23 C -0.683 4.683 24 S 2.444 3.556 25 O -0.941 6.941 26 O -0.935 6.935 27 C -0.577 4.577 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.199 0.801 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.181 0.819 40 H 0.148 0.852 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.955 -16.323 2.951 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.320 5.320 11 C 0.059 3.941 12 C -0.067 4.067 13 C -0.236 4.236 14 C -0.237 4.237 15 C -0.109 4.109 16 O -0.059 6.059 17 C 0.293 3.707 18 O -0.409 6.409 19 C -0.181 4.181 20 C -0.089 4.089 21 H 0.147 0.853 22 C -0.042 4.042 23 C -0.790 4.790 24 S 2.626 3.374 25 O -0.938 6.938 26 O -0.932 6.932 27 C -0.706 4.706 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.216 0.784 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.169 0.831 39 H 0.198 0.802 40 H 0.166 0.834 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.000 -16.192 1.892 17.742 hybrid contribution -0.256 1.421 0.616 1.569 sum 6.744 -14.771 2.508 16.431 Atomic orbital electron populations 1.69917 1.06037 1.27298 1.49743 1.24925 0.94861 0.99240 0.94869 0.86558 0.79530 0.82685 0.78638 1.20185 1.21127 1.20167 1.21328 0.93262 0.90479 1.51989 0.92376 1.19371 0.87324 0.81775 0.98796 1.48331 1.45931 1.34526 1.03225 1.19926 0.92971 0.92855 0.88379 1.23268 0.89962 0.96755 0.96698 1.21612 1.02493 0.93015 1.06439 1.21761 0.97850 1.00571 1.03518 1.24045 1.00482 0.82031 1.04378 1.84120 1.34152 1.32719 1.54881 1.20236 0.82397 0.83721 0.84367 1.90702 1.58201 1.61526 1.30478 1.21964 1.00836 0.99511 0.95827 1.20578 1.00294 0.89632 0.98434 0.85319 1.23298 0.89620 1.02979 0.88330 1.32542 1.08694 1.26504 1.11298 1.07215 0.75787 0.77063 0.77304 1.93592 1.29584 1.85212 1.85435 1.93635 1.78876 1.80206 1.40502 1.30698 1.13923 1.05543 1.20468 0.92532 0.93673 0.94729 0.87796 0.88052 0.83606 0.83740 0.78420 0.88208 0.87601 0.83050 0.80198 0.83387 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.12 9.39 -34.44 -0.32 -14.45 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.25 6.02 5.16 -5.19 -0.03 5.99 16 10 N -0.59 -10.99 2.44 -176.44 -0.43 -11.42 16 11 C 0.18 2.60 5.74 -5.20 -0.03 2.57 16 12 C -0.01 -0.20 6.90 -35.63 -0.25 -0.45 16 13 C -0.22 -2.51 9.98 -39.70 -0.40 -2.91 16 14 C -0.22 -2.41 10.91 -39.70 -0.43 -2.84 16 15 C -0.04 -0.48 12.09 29.42 0.36 -0.13 16 16 O -0.16 -2.51 10.65 5.71 0.06 -2.45 16 17 C 0.51 8.81 7.32 -10.98 -0.08 8.73 16 18 O -0.53 -11.43 13.93 5.56 0.08 -11.35 16 19 C -0.14 -1.55 3.59 -27.88 -0.10 -1.65 16 20 C -0.07 -0.73 2.34 -91.29 -0.21 -0.94 16 21 H 0.13 1.40 7.96 -51.93 -0.41 0.99 16 22 C -0.02 -0.28 8.63 -36.38 -0.31 -0.59 16 23 C -0.68 -7.78 11.05 29.20 0.32 -7.46 16 24 S 2.44 24.96 6.19 -107.50 -0.66 24.29 16 25 O -0.94 -12.23 18.02 -57.38 -1.03 -13.27 16 26 O -0.94 -12.76 18.02 -57.38 -1.03 -13.80 16 27 C -0.58 -3.88 7.22 38.18 0.28 -3.60 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.10 1.55 8.07 -51.93 -0.42 1.13 16 32 H 0.10 1.02 6.44 -51.93 -0.33 0.69 16 33 H 0.15 1.28 6.17 -52.48 -0.32 0.96 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.10 0.86 7.40 -51.93 -0.38 0.47 16 37 H 0.11 0.93 5.12 -51.93 -0.27 0.66 16 38 H 0.15 2.25 6.73 -52.49 -0.35 1.90 16 39 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.15 0.63 7.92 -51.93 -0.41 0.22 16 41 H 0.15 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -37.61 358.90 -8.15 -45.76 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.95 Total: 1.82 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.31 Total: -16.08 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.31 Total: -36.35 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.93 Total: -40.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 24.96 SS G_CDS: -0.66 Total: 24.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.61 -8.15 -45.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362093998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.716 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds