Wall clock time and date at job start Tue Mar 31 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99686 * 2 1 4 4 H 1.48500 * 109.46839 * 239.99632 * 3 2 1 5 5 H 1.48498 * 109.46875 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99892 * 3 2 1 7 7 C 1.37875 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47024 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00207 * 90.00371 * 10 9 7 12 12 C 1.50696 * 109.47436 * 89.99937 * 11 10 9 13 13 C 1.34512 * 125.79090 * 90.02309 * 12 11 10 14 14 C 1.41379 * 106.84332 * 180.02562 * 13 12 11 15 15 C 1.34512 * 106.84086 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.79037 * 270.02905 * 12 11 10 17 17 C 1.34786 * 119.99735 * 270.00463 * 10 9 7 18 18 O 1.21277 * 120.00369 * 359.97438 * 17 10 9 19 19 C 1.50698 * 119.99524 * 180.02562 * 17 10 9 20 20 C 1.52999 * 109.46960 * 179.97438 * 19 17 10 21 21 H 1.08997 * 109.41092 * 304.85480 * 20 19 17 22 22 C 1.49579 * 109.41231 * 64.65744 * 20 19 17 23 23 C 1.30330 * 119.15544 * 138.72764 * 22 20 19 24 24 S 1.77796 * 107.56664 * 359.67040 * 23 22 20 25 25 O 1.42102 * 105.57066 * 230.90137 * 24 23 22 26 26 O 1.42095 * 105.60658 * 100.44542 * 24 23 22 27 27 C 1.54940 * 109.41586 * 184.99613 * 20 19 17 28 28 H 0.96995 * 120.00485 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46972 * 60.00263 * 9 7 2 30 30 H 1.08993 * 109.47459 * 300.00044 * 9 7 2 31 31 H 1.09003 * 109.46817 * 329.99844 * 11 10 9 32 32 H 1.09005 * 109.46911 * 210.00399 * 11 10 9 33 33 H 1.08007 * 126.58045 * 0.02562 * 13 12 11 34 34 H 1.07997 * 126.58312 * 179.97438 * 14 13 12 35 35 H 1.07998 * 125.79383 * 179.97438 * 15 14 13 36 36 H 1.08996 * 109.47454 * 299.99512 * 19 17 10 37 37 H 1.09005 * 109.47536 * 59.99702 * 19 17 10 38 38 H 1.07999 * 120.42402 * 318.70021 * 22 20 19 39 39 H 1.08004 * 126.21545 * 179.67206 * 23 22 20 40 40 H 1.09001 * 111.34008 * 332.46720 * 27 20 19 41 41 H 1.09007 * 111.33503 * 97.12539 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 2.6792 -4.1683 1.2719 12 6 1.7625 -5.2821 1.7079 13 6 1.8984 -6.5823 1.3909 14 6 0.8262 -7.2682 2.0064 15 6 0.0990 -6.3461 2.6622 16 8 0.6714 -5.1451 2.4787 17 6 2.6412 -4.1258 -1.1642 18 8 2.2468 -3.6661 -2.2149 19 6 3.6201 -5.2715 -1.1631 20 6 3.9512 -5.6607 -2.6052 21 1 3.0284 -5.8799 -3.1423 22 6 4.6583 -4.5263 -3.2764 23 6 5.6722 -4.7816 -4.0546 24 16 5.9137 -6.5430 -4.0610 25 8 7.2911 -6.7403 -3.7729 26 8 5.3233 -7.0054 -5.2680 27 6 4.8575 -6.9174 -2.6044 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 2.6869 -3.3860 2.0308 32 1 3.6887 -4.5583 1.1418 33 1 2.6771 -7.0186 0.7828 34 1 0.6285 -8.3288 1.9584 35 1 -0.7935 -6.5388 3.2391 36 1 4.5326 -4.9694 -0.6493 37 1 3.1794 -6.1256 -0.6487 38 1 4.3327 -3.5088 -3.1186 39 1 6.2591 -4.0550 -4.5970 40 1 5.4490 -6.9793 -1.6910 41 1 4.2755 -7.8262 -2.7587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362093998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:50 Heat of formation + Delta-G solvation = -83.032034 kcal Electronic energy + Delta-G solvation = -27418.347222 eV Core-core repulsion = 23392.463922 eV Total energy + Delta-G solvation = -4025.883299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.40932 -41.03962 -38.46038 -38.02867 -36.93465 -36.78544 -34.94660 -33.81691 -32.61503 -31.51787 -30.07290 -28.65146 -26.76349 -25.34063 -23.86745 -22.55796 -21.74678 -21.42782 -20.17351 -19.64972 -18.82450 -18.34580 -18.11783 -17.77762 -17.41794 -17.01663 -16.64311 -16.52920 -16.22172 -15.99346 -15.59722 -15.33434 -14.87363 -14.48334 -14.26072 -13.95638 -13.74672 -13.67924 -13.55578 -13.50577 -13.39548 -13.25714 -13.07149 -12.95075 -12.92041 -12.72755 -12.52971 -12.34671 -12.21040 -11.79494 -11.63634 -11.45301 -11.04195 -10.74875 -10.65300 -10.60192 -9.66051 -9.33562 -8.23923 -6.38568 -0.83874 0.42703 0.81195 1.36215 1.39561 1.46699 1.68804 1.73392 1.78924 2.23429 2.36577 2.45556 2.66231 3.06710 3.13306 3.32855 3.37947 3.80902 3.81853 3.86329 4.07701 4.20769 4.21768 4.31182 4.43998 4.56306 4.59846 4.63868 4.74829 4.84323 4.87596 4.98514 5.01217 5.11440 5.20116 5.25986 5.28825 5.49840 5.73005 5.77605 6.02850 6.32702 6.65736 6.74261 7.26465 7.42052 8.83533 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.008689 B = 0.004154 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.772025 B = 6738.188501 C = 9400.038328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.598 5.598 11 C 0.182 3.818 12 C -0.053 4.053 13 C -0.197 4.197 14 C -0.220 4.220 15 C -0.055 4.055 16 O -0.204 6.204 17 C 0.496 3.504 18 O -0.586 6.586 19 C -0.128 4.128 20 C -0.075 4.075 21 H 0.123 0.877 22 C -0.037 4.037 23 C -0.689 4.689 24 S 2.457 3.543 25 O -0.970 6.970 26 O -0.975 6.975 27 C -0.531 4.531 28 H 0.266 0.734 29 H -0.004 1.004 30 H 0.011 0.989 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.184 0.816 34 H 0.175 0.825 35 H 0.225 0.775 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.176 0.824 40 H 0.192 0.808 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -19.328 4.485 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.328 5.328 11 C 0.059 3.941 12 C -0.104 4.104 13 C -0.216 4.216 14 C -0.239 4.239 15 C -0.122 4.122 16 O -0.101 6.101 17 C 0.285 3.715 18 O -0.466 6.466 19 C -0.168 4.168 20 C -0.094 4.094 21 H 0.141 0.859 22 C -0.057 4.057 23 C -0.795 4.795 24 S 2.642 3.358 25 O -0.967 6.967 26 O -0.972 6.972 27 C -0.664 4.664 28 H 0.075 0.925 29 H 0.014 0.986 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.241 0.759 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.194 0.806 40 H 0.209 0.791 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.990 -19.213 3.419 21.486 hybrid contribution -0.954 2.308 0.181 2.503 sum 8.036 -16.906 3.599 19.061 Atomic orbital electron populations 1.70056 1.07711 1.28142 1.51042 1.25851 0.95684 1.03066 0.94525 0.85506 0.78290 0.78207 0.79045 1.20228 1.20801 1.18338 1.21682 0.93510 0.91582 1.51088 0.92048 1.18652 0.87876 0.83837 0.95209 1.48266 1.45128 1.33510 1.05893 1.20194 0.95407 0.92820 0.85659 1.23290 0.90648 0.97664 0.98794 1.22078 1.02800 0.91722 1.05032 1.22202 0.97215 1.01869 1.02593 1.24798 1.01343 0.81346 1.04732 1.84085 1.35246 1.34752 1.55976 1.21449 0.82510 0.84644 0.82854 1.90680 1.60145 1.63480 1.32332 1.22057 1.00274 0.97497 0.96942 1.20633 1.00635 0.90377 0.97777 0.85904 1.23250 0.90242 1.02500 0.89697 1.32799 1.08175 1.28147 1.10421 1.06835 0.75456 0.75519 0.78004 1.93553 1.31994 1.85076 1.86090 1.93586 1.79341 1.80249 1.44065 1.30638 1.12005 1.04992 1.18810 0.92531 0.98554 0.97063 0.89699 0.83025 0.79858 0.80738 0.75891 0.84573 0.84017 0.86539 0.80620 0.79065 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.54 -29.80 9.39 25.60 0.24 -29.56 16 8 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 9 C 0.27 13.81 5.16 85.63 0.44 14.25 16 10 N -0.60 -22.51 2.44 -830.51 -2.03 -24.53 16 11 C 0.18 4.91 5.74 85.63 0.49 5.40 16 12 C -0.05 -1.39 6.90 24.83 0.17 -1.22 16 13 C -0.20 -3.71 9.98 22.19 0.22 -3.49 16 14 C -0.22 -4.02 10.91 22.19 0.24 -3.78 16 15 C -0.05 -1.20 12.09 66.97 0.81 -0.39 16 16 O -0.20 -6.21 10.65 -2.47 -0.03 -6.24 16 17 C 0.50 17.00 7.32 87.66 0.64 17.64 16 18 O -0.59 -26.26 13.93 -3.02 -0.04 -26.30 16 19 C -0.13 -2.26 3.59 29.85 0.11 -2.16 16 20 C -0.07 -1.31 2.34 -11.23 -0.03 -1.33 16 21 H 0.12 2.38 7.96 -2.39 -0.02 2.36 16 22 C -0.04 -0.89 8.63 25.99 0.22 -0.67 16 23 C -0.69 -15.51 11.05 68.47 0.76 -14.76 16 24 S 2.46 44.70 6.19 -56.49 -0.35 44.35 16 25 O -0.97 -23.18 18.02 -127.81 -2.30 -25.49 16 26 O -0.98 -25.56 18.02 -127.81 -2.30 -27.87 16 27 C -0.53 -3.97 7.22 72.65 0.52 -3.45 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 30 H 0.01 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 32 H 0.15 2.41 6.44 -2.38 -0.02 2.39 16 33 H 0.18 1.86 6.17 -2.91 -0.02 1.84 16 34 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.14 1.51 7.40 -2.39 -0.02 1.49 16 37 H 0.14 1.51 5.12 -2.38 -0.01 1.50 16 38 H 0.12 3.67 6.73 -2.91 -0.02 3.65 16 39 H 0.18 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.19 -0.01 7.92 -2.39 -0.02 -0.03 16 41 H 0.19 0.10 8.14 -2.38 -0.02 0.08 16 Total: -1.00 -91.19 358.90 1.63 -89.56 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.06 Total: 8.77 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 5.31 Total: -22.61 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.74 Total: -80.17 kcal Atomic # 8 Polarization: -81.22 SS G_CDS: -4.67 Total: -85.89 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 44.70 SS G_CDS: -0.35 Total: 44.35 kcal Total: -91.19 1.63 -89.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362093998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.523 kcal (2) G-P(sol) polarization free energy of solvation -91.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds