Wall clock time and date at job start Tue Mar 31 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 119.99756 * 2 1 4 4 H 1.48498 * 109.46701 * 269.99837 * 3 2 1 5 5 H 1.48492 * 109.47313 * 29.99942 * 3 2 1 6 6 H 1.48502 * 109.46890 * 150.00110 * 3 2 1 7 7 C 1.37880 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99953 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00359 * 269.99986 * 10 9 7 12 12 C 1.50703 * 109.47198 * 270.00012 * 11 10 9 13 13 C 1.34517 * 125.78702 * 89.71743 * 12 11 10 14 14 C 1.41382 * 106.83807 * 179.88978 * 13 12 11 15 15 C 1.34516 * 106.84287 * 0.37098 * 14 13 12 16 16 O 1.34297 * 125.79253 * 270.02436 * 12 11 10 17 17 C 1.34778 * 119.99669 * 90.00289 * 10 9 7 18 18 O 1.21286 * 119.99966 * 180.02562 * 17 10 9 19 19 C 1.50705 * 120.00198 * 359.97438 * 17 10 9 20 20 C 1.52999 * 109.47046 * 180.02562 * 19 17 10 21 21 H 1.08994 * 109.36401 * 53.37221 * 20 19 17 22 22 C 1.49578 * 109.41180 * 293.54412 * 20 19 17 23 23 C 1.30332 * 119.15788 * 258.51957 * 22 20 19 24 24 S 1.77793 * 107.56427 * 359.94052 * 23 22 20 25 25 O 1.42101 * 105.57336 * 100.16628 * 24 23 22 26 26 O 1.42101 * 105.57363 * 230.63500 * 24 23 22 27 27 C 1.54943 * 109.40997 * 173.20718 * 20 19 17 28 28 H 0.97003 * 120.00300 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47172 * 59.99676 * 9 7 2 30 30 H 1.08998 * 109.46816 * 300.00255 * 9 7 2 31 31 H 1.09002 * 109.47017 * 30.00207 * 11 10 9 32 32 H 1.08997 * 109.47298 * 150.00299 * 11 10 9 33 33 H 1.08003 * 126.57832 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.57676 * 180.11501 * 14 13 12 35 35 H 1.07999 * 125.78662 * 179.74665 * 15 14 13 36 36 H 1.09002 * 109.46945 * 60.00101 * 19 17 10 37 37 H 1.09001 * 109.47011 * 300.00563 * 19 17 10 38 38 H 1.08001 * 120.41940 * 78.55208 * 22 20 19 39 39 H 1.08002 * 126.21468 * 179.67066 * 23 22 20 40 40 H 1.09004 * 111.33094 * 212.66697 * 27 20 19 41 41 H 1.08997 * 111.33658 * 337.36655 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1694 -1.2681 12 6 1.7625 -5.2836 -1.7031 13 6 0.6670 -5.1463 -2.4715 14 6 0.1147 -6.4379 -2.6319 15 6 0.9011 -7.2861 -1.9452 16 8 1.8976 -6.5813 -1.3848 17 6 2.6410 -4.1248 1.1678 18 8 3.4295 -5.0463 1.1679 19 6 2.1517 -3.5517 2.4729 20 6 2.7981 -4.3070 3.6358 21 1 3.8810 -4.3037 3.5115 22 6 2.3035 -5.7186 3.6480 23 6 1.3778 -6.0597 4.4997 24 16 0.9683 -4.6164 5.4538 25 8 -0.2302 -4.1093 4.8830 26 8 1.0417 -5.0241 6.8131 27 6 2.4306 -3.6104 4.9701 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6870 -3.3877 -2.0278 32 1 3.6886 -4.5593 -1.1377 33 1 0.2841 -4.2262 -2.8879 34 1 -0.7712 -6.6937 -3.1942 35 1 0.7556 -8.3527 -1.8589 36 1 1.0679 -3.6534 2.5308 37 1 2.4212 -2.4971 2.5304 38 1 2.7086 -6.4460 2.9601 39 1 0.9364 -7.0399 4.6038 40 1 3.2365 -3.6987 5.6987 41 1 2.1560 -2.5677 4.8106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362094009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:53 Heat of formation + Delta-G solvation = -59.456735 kcal Electronic energy + Delta-G solvation = -27785.235889 eV Core-core repulsion = 23760.374891 eV Total energy + Delta-G solvation = -4024.860998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.24586 -39.71160 -37.43390 -36.90272 -35.83886 -35.28166 -32.93391 -32.58223 -31.57897 -30.43870 -28.27444 -27.42935 -25.47029 -23.58939 -22.91958 -21.41012 -20.65364 -20.10720 -18.91221 -18.54730 -17.45174 -17.21124 -16.69444 -16.30101 -16.20164 -15.72731 -15.40453 -15.11849 -14.86722 -14.61327 -14.36442 -14.02779 -13.80773 -13.17656 -13.01391 -12.54102 -12.51589 -12.48572 -12.44751 -12.30930 -12.12730 -11.98232 -11.94698 -11.63171 -11.38715 -11.36322 -11.03772 -10.83900 -10.56719 -10.41278 -10.31271 -10.02198 -9.92253 -9.64247 -9.34539 -8.67611 -8.26206 -8.00296 -6.28545 -4.38095 0.10111 1.41233 1.95437 2.66639 2.84068 3.05625 3.15303 3.24012 3.25052 3.39091 3.55557 3.75639 4.09938 4.22477 4.34629 4.39356 4.83162 4.98912 5.04690 5.12846 5.22249 5.28546 5.29780 5.37712 5.42508 5.59335 5.67761 5.80945 5.92496 5.95928 6.04595 6.05699 6.21848 6.23897 6.35629 6.54535 6.77087 7.06816 7.29330 7.45055 7.64252 7.91239 8.08182 8.61364 8.76954 9.30668 10.78126 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.007354 B = 0.005320 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3806.458741 B = 5261.601147 C = 7995.538190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.233 3.767 10 N -0.588 5.588 11 C 0.196 3.804 12 C -0.018 4.018 13 C -0.200 4.200 14 C -0.215 4.215 15 C -0.053 4.053 16 O -0.168 6.168 17 C 0.521 3.479 18 O -0.567 6.567 19 C -0.140 4.140 20 C -0.071 4.071 21 H 0.125 0.875 22 C -0.021 4.021 23 C -0.685 4.685 24 S 2.435 3.565 25 O -0.926 6.926 26 O -0.945 6.945 27 C -0.571 4.571 28 H 0.267 0.733 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.196 0.804 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.179 0.821 40 H 0.147 0.853 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -9.075 2.792 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.113 3.887 10 N -0.318 5.318 11 C 0.072 3.928 12 C -0.069 4.069 13 C -0.220 4.220 14 C -0.235 4.235 15 C -0.121 4.121 16 O -0.063 6.063 17 C 0.309 3.691 18 O -0.448 6.448 19 C -0.180 4.180 20 C -0.091 4.091 21 H 0.143 0.857 22 C -0.041 4.041 23 C -0.792 4.792 24 S 2.616 3.384 25 O -0.923 6.923 26 O -0.942 6.942 27 C -0.702 4.702 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.213 0.787 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.356 -9.338 3.556 10.541 hybrid contribution 0.618 0.640 -1.017 1.352 sum 3.974 -8.698 2.539 9.895 Atomic orbital electron populations 1.69920 1.06019 1.27571 1.48714 1.24950 0.94833 0.99314 0.94556 0.86518 0.79775 0.82919 0.78388 1.20466 1.20986 1.19756 1.21445 0.93603 0.90251 1.53203 0.91867 1.19578 0.87456 0.82238 0.99381 1.48275 1.45522 1.34439 1.03539 1.19708 0.95194 0.90302 0.87553 1.23204 1.00205 0.83003 1.00532 1.21691 0.97172 0.98846 1.04335 1.21803 1.02859 0.93243 1.05562 1.23959 0.90155 0.97870 1.00107 1.84088 1.44281 1.18723 1.59219 1.20281 0.80794 0.82225 0.85778 1.90607 1.36206 1.30137 1.87889 1.21923 1.02739 1.02723 0.90595 1.20583 1.05524 0.90406 0.92597 0.85696 1.23184 0.90777 0.96826 0.93294 1.32609 1.10228 1.20567 1.15788 1.07556 0.77621 0.77842 0.75333 1.93675 1.40727 1.79424 1.78522 1.93574 1.87179 1.80640 1.32822 1.30651 1.19820 1.13595 1.06090 0.92286 0.94229 0.93887 0.86915 0.89142 0.83309 0.83833 0.78707 0.87675 0.85552 0.83608 0.80378 0.83440 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.22 13.29 55.43 0.74 -22.49 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -12.97 9.28 -34.44 -0.32 -13.29 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.23 5.11 4.96 -5.20 -0.03 5.09 16 10 N -0.59 -11.33 2.44 -176.44 -0.43 -11.76 16 11 C 0.20 3.39 5.94 -5.20 -0.03 3.36 16 12 C -0.02 -0.31 6.90 -35.62 -0.25 -0.55 16 13 C -0.20 -3.24 10.81 -39.70 -0.43 -3.67 16 14 C -0.22 -3.05 10.91 -39.70 -0.43 -3.48 16 15 C -0.05 -0.73 12.09 29.42 0.36 -0.37 16 16 O -0.17 -2.87 10.65 5.73 0.06 -2.81 16 17 C 0.52 9.61 7.43 -10.98 -0.08 9.53 16 18 O -0.57 -10.92 14.11 5.55 0.08 -10.85 16 19 C -0.14 -2.22 3.59 -27.88 -0.10 -2.32 16 20 C -0.07 -0.89 2.33 -91.29 -0.21 -1.11 16 21 H 0.13 1.46 7.89 -51.93 -0.41 1.05 16 22 C -0.02 -0.27 8.48 -36.38 -0.31 -0.58 16 23 C -0.68 -8.59 11.04 29.20 0.32 -8.27 16 24 S 2.43 31.14 6.19 -107.50 -0.67 30.48 16 25 O -0.93 -15.39 18.02 -57.37 -1.03 -16.43 16 26 O -0.95 -14.22 18.02 -57.37 -1.03 -15.26 16 27 C -0.57 -5.61 7.27 38.18 0.28 -5.33 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 0.99 6.44 -51.93 -0.33 0.66 16 31 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 32 H 0.09 1.53 7.42 -51.93 -0.39 1.15 16 33 H 0.15 2.32 8.06 -52.48 -0.42 1.89 16 34 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.11 1.73 7.39 -51.93 -0.38 1.34 16 37 H 0.13 1.98 7.89 -51.93 -0.41 1.57 16 38 H 0.15 2.00 7.22 -52.49 -0.38 1.62 16 39 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.15 1.31 7.79 -51.93 -0.40 0.90 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -32.79 364.74 -8.35 -41.13 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.20 Total: 7.67 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.33 Total: -19.43 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.31 Total: -34.24 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.93 Total: -45.34 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 31.14 SS G_CDS: -0.67 Total: 30.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.79 -8.35 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362094009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.325 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds