Wall clock time and date at job start Tue Mar 31 2020 22:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 119.99756 * 2 1 4 4 H 1.48498 * 109.46701 * 269.99837 * 3 2 1 5 5 H 1.48492 * 109.47313 * 29.99942 * 3 2 1 6 6 H 1.48502 * 109.46890 * 150.00110 * 3 2 1 7 7 C 1.37880 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99953 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00359 * 269.99986 * 10 9 7 12 12 C 1.50703 * 109.47198 * 270.00012 * 11 10 9 13 13 C 1.34517 * 125.78702 * 89.71743 * 12 11 10 14 14 C 1.41382 * 106.83807 * 179.88978 * 13 12 11 15 15 C 1.34516 * 106.84287 * 0.37098 * 14 13 12 16 16 O 1.34297 * 125.79253 * 270.02436 * 12 11 10 17 17 C 1.34778 * 119.99669 * 90.00289 * 10 9 7 18 18 O 1.21286 * 119.99966 * 180.02562 * 17 10 9 19 19 C 1.50705 * 120.00198 * 359.97438 * 17 10 9 20 20 C 1.52999 * 109.47046 * 180.02562 * 19 17 10 21 21 H 1.08994 * 109.36401 * 53.37221 * 20 19 17 22 22 C 1.49578 * 109.41180 * 293.54412 * 20 19 17 23 23 C 1.30332 * 119.15788 * 258.51957 * 22 20 19 24 24 S 1.77793 * 107.56427 * 359.94052 * 23 22 20 25 25 O 1.42101 * 105.57336 * 100.16628 * 24 23 22 26 26 O 1.42101 * 105.57363 * 230.63500 * 24 23 22 27 27 C 1.54943 * 109.40997 * 173.20718 * 20 19 17 28 28 H 0.97003 * 120.00300 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47172 * 59.99676 * 9 7 2 30 30 H 1.08998 * 109.46816 * 300.00255 * 9 7 2 31 31 H 1.09002 * 109.47017 * 30.00207 * 11 10 9 32 32 H 1.08997 * 109.47298 * 150.00299 * 11 10 9 33 33 H 1.08003 * 126.57832 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.57676 * 180.11501 * 14 13 12 35 35 H 1.07999 * 125.78662 * 179.74665 * 15 14 13 36 36 H 1.09002 * 109.46945 * 60.00101 * 19 17 10 37 37 H 1.09001 * 109.47011 * 300.00563 * 19 17 10 38 38 H 1.08001 * 120.41940 * 78.55208 * 22 20 19 39 39 H 1.08002 * 126.21468 * 179.67066 * 23 22 20 40 40 H 1.09004 * 111.33094 * 212.66697 * 27 20 19 41 41 H 1.08997 * 111.33658 * 337.36655 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1694 -1.2681 12 6 1.7625 -5.2836 -1.7031 13 6 0.6670 -5.1463 -2.4715 14 6 0.1147 -6.4379 -2.6319 15 6 0.9011 -7.2861 -1.9452 16 8 1.8976 -6.5813 -1.3848 17 6 2.6410 -4.1248 1.1678 18 8 3.4295 -5.0463 1.1679 19 6 2.1517 -3.5517 2.4729 20 6 2.7981 -4.3070 3.6358 21 1 3.8810 -4.3037 3.5115 22 6 2.3035 -5.7186 3.6480 23 6 1.3778 -6.0597 4.4997 24 16 0.9683 -4.6164 5.4538 25 8 -0.2302 -4.1093 4.8830 26 8 1.0417 -5.0241 6.8131 27 6 2.4306 -3.6104 4.9701 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6870 -3.3877 -2.0278 32 1 3.6886 -4.5593 -1.1377 33 1 0.2841 -4.2262 -2.8879 34 1 -0.7712 -6.6937 -3.1942 35 1 0.7556 -8.3527 -1.8589 36 1 1.0679 -3.6534 2.5308 37 1 2.4212 -2.4971 2.5304 38 1 2.7086 -6.4460 2.9601 39 1 0.9364 -7.0399 4.6038 40 1 3.2365 -3.6987 5.6987 41 1 2.1560 -2.5677 4.8106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362094009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:52 Heat of formation + Delta-G solvation = -81.279126 kcal Electronic energy + Delta-G solvation = -27786.182179 eV Core-core repulsion = 23760.374891 eV Total energy + Delta-G solvation = -4025.807288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46600 -41.09402 -38.58716 -38.03465 -36.97335 -36.81906 -34.67545 -33.87713 -32.76349 -31.67906 -29.40702 -29.13598 -26.75743 -25.04497 -24.33316 -22.62431 -21.82402 -21.23056 -20.14483 -19.77037 -18.78812 -18.48354 -18.14103 -17.77063 -17.54838 -16.93375 -16.61346 -16.41328 -16.29732 -16.04098 -15.54610 -15.25249 -14.93143 -14.45813 -14.31203 -14.04805 -13.84039 -13.71785 -13.56895 -13.50791 -13.39244 -13.27637 -13.12152 -12.99764 -12.92555 -12.69967 -12.54886 -12.44891 -12.05875 -11.72260 -11.64624 -11.46353 -11.04657 -10.89317 -10.77799 -10.55779 -9.67455 -9.40478 -8.17370 -6.32781 -0.89355 0.37573 0.72680 1.46078 1.49074 1.57352 1.60798 1.66804 1.69007 2.15833 2.35604 2.46407 2.60080 3.10373 3.14188 3.33671 3.36739 3.71612 3.78417 3.87367 4.13580 4.15958 4.22858 4.34025 4.40669 4.53436 4.56805 4.59420 4.74414 4.81431 4.85647 4.88558 4.92145 5.02168 5.19270 5.21913 5.24477 5.58902 5.63602 5.77368 6.05535 6.22857 6.50758 6.81102 7.21196 7.40892 8.88705 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.007354 B = 0.005320 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3806.458741 B = 5261.601147 C = 7995.538190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.594 5.594 11 C 0.196 3.804 12 C -0.043 4.043 13 C -0.208 4.208 14 C -0.225 4.225 15 C -0.045 4.045 16 O -0.188 6.188 17 C 0.515 3.485 18 O -0.575 6.575 19 C -0.142 4.142 20 C -0.070 4.070 21 H 0.142 0.858 22 C -0.027 4.027 23 C -0.682 4.682 24 S 2.435 3.565 25 O -0.973 6.973 26 O -0.971 6.971 27 C -0.539 4.539 28 H 0.267 0.733 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.238 0.762 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -9.285 3.138 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.324 5.324 11 C 0.073 3.927 12 C -0.094 4.094 13 C -0.229 4.229 14 C -0.244 4.244 15 C -0.112 4.112 16 O -0.084 6.084 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.181 4.181 20 C -0.090 4.090 21 H 0.159 0.841 22 C -0.047 4.047 23 C -0.789 4.789 24 S 2.621 3.379 25 O -0.970 6.970 26 O -0.968 6.968 27 C -0.672 4.672 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.254 0.746 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.206 0.794 40 H 0.207 0.793 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.680 -9.577 3.913 11.354 hybrid contribution 0.215 0.604 -1.200 1.360 sum 4.895 -8.973 2.712 10.575 Atomic orbital electron populations 1.70029 1.07446 1.28221 1.50174 1.25656 0.95404 1.02342 0.94365 0.85576 0.78830 0.79171 0.78227 1.20451 1.21149 1.18758 1.21654 0.93631 0.90912 1.52108 0.91800 1.19174 0.87457 0.82760 0.97723 1.48257 1.45289 1.34081 1.04737 1.19732 0.95330 0.90701 0.86958 1.23104 1.01007 0.83296 1.01998 1.21901 0.97069 0.99927 1.03965 1.22147 1.03903 0.92212 1.06100 1.24841 0.88562 0.99468 0.98314 1.84067 1.45623 1.18777 1.59979 1.20731 0.80518 0.82035 0.86286 1.90594 1.36587 1.30401 1.88087 1.21965 1.02309 1.03245 0.90604 1.20615 1.06129 0.89822 0.92455 0.84054 1.23178 0.91113 0.97121 0.93321 1.32689 1.09698 1.21026 1.15508 1.07382 0.78029 0.77952 0.74506 1.93620 1.44255 1.80144 1.79004 1.93536 1.87815 1.81277 1.34169 1.30613 1.18209 1.13297 1.05090 0.92386 0.96158 0.95225 0.86566 0.89022 0.83514 0.81164 0.74561 0.88771 0.85291 0.84335 0.79396 0.79254 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.29 21.45 0.28 -48.46 16 2 C 0.02 1.14 5.46 84.66 0.46 1.60 16 3 Si 0.96 38.98 29.54 68.60 2.03 41.01 16 4 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.54 -25.80 9.28 25.60 0.24 -25.57 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.25 11.17 4.96 85.63 0.43 11.59 16 10 N -0.59 -23.09 2.44 -830.52 -2.03 -25.12 16 11 C 0.20 6.88 5.94 85.63 0.51 7.38 16 12 C -0.04 -1.49 6.90 24.83 0.17 -1.31 16 13 C -0.21 -6.75 10.81 22.19 0.24 -6.51 16 14 C -0.22 -6.03 10.91 22.19 0.24 -5.79 16 15 C -0.04 -1.14 12.09 66.97 0.81 -0.34 16 16 O -0.19 -6.33 10.65 -2.42 -0.03 -6.35 16 17 C 0.51 18.85 7.43 87.66 0.65 19.50 16 18 O -0.57 -21.77 14.11 -3.05 -0.04 -21.81 16 19 C -0.14 -4.38 3.59 29.85 0.11 -4.27 16 20 C -0.07 -1.62 2.33 -11.22 -0.03 -1.65 16 21 H 0.14 2.88 7.89 -2.39 -0.02 2.86 16 22 C -0.03 -0.68 8.48 25.99 0.22 -0.46 16 23 C -0.68 -16.53 11.04 68.47 0.76 -15.77 16 24 S 2.44 60.27 6.19 -56.49 -0.35 59.92 16 25 O -0.97 -32.78 18.02 -127.81 -2.30 -35.08 16 26 O -0.97 -28.43 18.02 -127.81 -2.30 -30.73 16 27 C -0.54 -8.95 7.27 72.65 0.53 -8.42 16 28 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.03 1.41 6.44 -2.39 -0.02 1.39 16 31 H 0.12 3.86 8.07 -2.39 -0.02 3.84 16 32 H 0.09 3.14 7.42 -2.39 -0.02 3.12 16 33 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.24 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.09 3.13 7.39 -2.39 -0.02 3.11 16 37 H 0.13 3.89 7.89 -2.39 -0.02 3.87 16 38 H 0.14 3.69 7.22 -2.91 -0.02 3.67 16 39 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.19 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.17 2.36 7.79 -2.39 -0.02 2.35 16 Total: -1.00 -70.94 364.74 1.64 -69.30 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.05 Total: 27.35 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 5.33 Total: -30.01 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.74 Total: -73.58 kcal Atomic # 8 Polarization: -89.30 SS G_CDS: -4.67 Total: -93.97 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 16 Polarization: 60.27 SS G_CDS: -0.35 Total: 59.92 kcal Total: -70.94 1.64 -69.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362094009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.983 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds