Wall clock time and date at job start Tue Mar 31 2020 23:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34222 * 117.00237 * 2 1 4 4 O 1.20827 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00429 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46988 * 275.00688 * 5 3 2 7 7 O 1.42905 * 109.46353 * 35.00157 * 5 3 2 8 8 C 1.52991 * 109.47439 * 155.00104 * 5 3 2 9 9 N 1.46502 * 109.47180 * 180.02562 * 8 5 3 10 10 C 1.34780 * 120.00045 * 180.02562 * 9 8 5 11 11 O 1.21606 * 119.99806 * 359.97438 * 10 9 8 12 12 C 1.47419 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.39676 * 120.21971 * 0.02562 * 12 10 9 14 14 C 1.37805 * 119.94647 * 179.97438 * 13 12 10 15 15 C 1.38665 * 120.37667 * 0.02562 * 14 13 12 16 16 C 1.37911 * 120.43718 * 359.97438 * 15 14 13 17 17 C 1.39108 * 120.05061 * 359.74013 * 16 15 14 18 18 S 1.76205 * 120.18846 * 180.25704 * 17 16 15 19 19 C 1.76197 * 100.00119 * 6.86977 * 18 17 16 20 20 H 1.08002 * 119.99945 * 5.65606 * 19 18 17 21 21 C 1.38805 * 120.00099 * 185.66069 * 19 18 17 22 22 N 1.31549 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47316 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47232 * 120.00002 * 23 21 19 26 26 H 1.48500 * 109.47090 * 239.99569 * 23 21 19 27 27 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46730 * 300.00042 * 1 2 3 29 29 H 1.09005 * 109.47041 * 59.99356 * 1 2 3 30 30 H 1.09000 * 109.46716 * 299.99239 * 6 5 3 31 31 H 1.08998 * 109.47252 * 59.99543 * 6 5 3 32 32 H 1.08994 * 109.46535 * 179.97438 * 6 5 3 33 33 H 0.96696 * 114.00192 * 60.00758 * 7 5 3 34 34 H 1.09003 * 109.47602 * 300.00375 * 8 5 3 35 35 H 1.09000 * 109.47311 * 60.00120 * 8 5 3 36 36 H 0.96995 * 119.99886 * 359.97438 * 9 8 5 37 37 H 1.08005 * 120.02526 * 359.95188 * 13 12 10 38 38 H 1.07994 * 119.81678 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.78031 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.97420 * 180.02562 * 16 15 14 41 41 H 0.97000 * 120.00332 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0829 1.1755 1.4362 7 8 4.0994 0.1977 -0.7739 8 6 4.0071 2.6071 -0.6100 9 7 5.4701 2.6835 -0.6111 10 6 6.0875 3.7755 -1.1041 11 8 5.4302 4.6971 -1.5483 12 6 7.5597 3.8526 -1.1046 13 6 8.3192 2.7964 -0.5960 14 6 9.6950 2.8742 -0.5998 15 6 10.3325 3.9969 -1.1059 16 6 9.5980 5.0487 -1.6119 17 6 8.2084 4.9867 -1.6224 18 16 7.2666 6.3257 -2.2743 19 6 8.5637 7.3208 -2.9313 20 1 9.5803 6.9562 -2.9248 21 6 8.2790 8.5735 -3.4571 22 7 7.0408 9.0175 -3.4654 23 14 9.6541 9.6282 -4.1543 24 1 10.9452 8.9054 -4.0278 25 1 9.3832 9.9114 -5.5867 26 1 9.7273 10.9066 -3.4023 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 3.6763 1.9971 2.0260 31 1 3.7689 0.2263 1.8704 32 1 5.1713 1.2321 1.4357 33 1 3.8134 0.1975 -1.6976 34 1 3.6391 2.6779 -1.6337 35 1 3.6005 3.4287 -0.0203 36 1 5.9944 1.9486 -0.2565 37 1 7.8285 1.9197 -0.1997 38 1 10.2802 2.0566 -0.2056 39 1 11.4113 4.0478 -1.1037 40 1 10.1022 5.9193 -2.0046 41 1 6.8418 9.8927 -3.8332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362322106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:37 Heat of formation + Delta-G solvation = -135.735087 kcal Electronic energy + Delta-G solvation = -26587.679107 eV Core-core repulsion = 22559.510431 eV Total energy + Delta-G solvation = -4028.168675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18403 -39.58659 -38.13027 -37.25413 -36.82773 -34.27237 -32.75727 -31.85541 -30.47044 -30.27447 -28.22498 -26.98637 -25.82922 -24.24160 -22.74931 -21.89936 -20.72362 -20.23454 -18.76893 -18.36415 -17.40495 -17.25202 -16.85912 -16.03824 -15.61216 -15.46510 -15.33935 -15.06593 -14.54021 -14.33115 -14.23740 -13.85459 -13.71867 -13.44126 -13.02419 -12.94235 -12.84031 -12.77878 -12.66721 -12.36146 -12.04365 -11.81964 -11.59661 -11.24954 -11.21739 -11.16790 -11.10475 -10.91721 -10.39248 -10.31285 -9.82617 -9.67613 -9.51873 -8.87975 -8.73659 -8.34297 -8.07689 -6.54255 -6.46437 -4.17136 1.51944 1.70629 2.01795 2.12515 3.10461 3.11957 3.20465 3.39094 3.45053 3.48913 3.68879 4.06084 4.10445 4.33492 4.42525 4.49918 4.74902 4.83087 4.94710 5.11995 5.14931 5.21455 5.29393 5.34246 5.38102 5.47840 5.60065 5.69762 5.70841 5.94320 5.96020 6.11247 6.38070 6.57484 6.61226 6.84216 6.96182 7.02064 7.13088 7.35239 7.44611 7.58792 7.83300 8.16338 8.73722 8.99916 10.56868 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002796 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.956470 B =10011.846337 C =11454.408075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.439 3.561 4 O -0.489 6.489 5 C 0.141 3.859 6 C -0.142 4.142 7 O -0.533 6.533 8 C 0.110 3.890 9 N -0.732 5.732 10 C 0.553 3.447 11 O -0.506 6.506 12 C -0.177 4.177 13 C -0.060 4.060 14 C -0.186 4.186 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.056 4.056 18 S 0.184 5.816 19 C -0.595 4.595 20 H 0.092 0.908 21 C 0.083 3.917 22 N -0.857 5.857 23 Si 0.920 3.080 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.387 0.613 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -19.186 8.136 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.279 3.721 4 O -0.375 6.375 5 C 0.098 3.902 6 C -0.199 4.199 7 O -0.339 6.339 8 C -0.015 4.015 9 N -0.389 5.389 10 C 0.343 3.657 11 O -0.383 6.383 12 C -0.192 4.192 13 C -0.080 4.080 14 C -0.211 4.211 15 C -0.098 4.098 16 C -0.178 4.178 17 C -0.176 4.176 18 S 0.449 5.551 19 C -0.742 4.742 20 H 0.109 0.891 21 C -0.128 4.128 22 N -0.490 5.490 23 Si 0.745 3.255 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.160 -17.625 8.125 21.054 hybrid contribution 1.893 0.203 -0.754 2.047 sum -6.267 -17.422 7.372 19.929 Atomic orbital electron populations 1.23347 0.76227 1.03901 1.02783 1.86578 1.23394 1.32782 1.83488 1.24566 0.92531 0.81866 0.73125 1.90747 1.66808 1.36250 1.43738 1.21316 0.84262 0.88723 0.95920 1.21830 1.03492 1.04024 0.90567 1.86608 1.72891 1.48055 1.26375 1.21627 0.82540 0.95166 1.02185 1.45668 1.05392 1.21363 1.66458 1.18317 0.87913 0.81613 0.77867 1.90806 1.66123 1.36523 1.44831 1.19030 0.91226 0.96930 1.12051 1.20900 0.94132 0.96058 0.96918 1.20639 0.94078 0.99252 1.07137 1.21096 0.98968 0.93395 0.96378 1.21436 0.92994 1.00192 1.03179 1.23087 0.97662 0.99536 0.97352 1.84777 1.06506 1.07888 1.55919 1.24094 0.98234 1.05581 1.46271 0.89067 1.25105 0.96546 0.96717 0.94437 1.69983 1.18341 1.19382 1.41292 0.86095 0.81047 0.79608 0.78756 1.19142 1.20236 1.20235 0.87868 0.91740 0.91683 0.89795 0.90388 0.89527 0.76359 0.90633 0.89071 0.76397 0.87115 0.87024 0.87006 0.84358 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.24 10.32 -44.41 -0.46 -3.70 16 3 C 0.44 4.73 6.80 36.01 0.24 4.98 16 4 O -0.49 -6.68 15.84 -18.75 -0.30 -6.98 16 5 C 0.14 1.37 1.01 -91.77 -0.09 1.27 16 6 C -0.14 -1.16 8.65 37.16 0.32 -0.84 16 7 O -0.53 -4.61 12.51 -49.12 -0.61 -5.23 16 8 C 0.11 1.39 4.31 -4.05 -0.02 1.37 16 9 N -0.73 -10.05 5.10 -61.39 -0.31 -10.36 16 10 C 0.55 10.53 7.75 -12.52 -0.10 10.43 16 11 O -0.51 -11.77 13.77 5.27 0.07 -11.70 16 12 C -0.18 -3.44 5.89 -104.76 -0.62 -4.06 16 13 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 14 C -0.19 -2.81 10.02 -39.58 -0.40 -3.21 16 15 C -0.08 -1.28 10.03 -39.54 -0.40 -1.68 16 16 C -0.15 -3.16 9.22 -39.38 -0.36 -3.53 16 17 C -0.06 -1.28 6.15 -38.39 -0.24 -1.51 16 18 S 0.18 4.94 18.56 -107.50 -2.00 2.94 16 19 C -0.60 -16.37 9.00 30.94 0.28 -16.09 16 20 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 21 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 22 N -0.86 -24.75 13.22 55.49 0.73 -24.02 16 23 Si 0.92 20.67 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.65 6.86 -51.93 -0.36 0.30 16 33 H 0.39 2.37 9.04 45.56 0.41 2.79 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.31 7.87 -51.93 -0.41 0.90 16 36 H 0.40 4.45 5.22 -40.82 -0.21 4.24 16 37 H 0.11 1.29 6.40 -52.48 -0.34 0.95 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.14 2.99 5.03 -52.49 -0.26 2.73 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -34.36 363.28 -7.14 -41.50 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.94 Total: 7.14 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.77 Total: -10.71 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.42 Total: -34.38 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.30 Total: -27.61 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.36 -7.14 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362322106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.238 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds