Wall clock time and date at job start Tue Mar 31 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34222 * 117.00237 * 2 1 4 4 O 1.20827 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00429 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46988 * 275.00688 * 5 3 2 7 7 O 1.42905 * 109.46353 * 35.00157 * 5 3 2 8 8 C 1.52991 * 109.47439 * 155.00104 * 5 3 2 9 9 N 1.46502 * 109.47180 * 180.02562 * 8 5 3 10 10 C 1.34780 * 120.00045 * 180.02562 * 9 8 5 11 11 O 1.21606 * 119.99806 * 359.97438 * 10 9 8 12 12 C 1.47419 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.39676 * 120.21971 * 0.02562 * 12 10 9 14 14 C 1.37805 * 119.94647 * 179.97438 * 13 12 10 15 15 C 1.38665 * 120.37667 * 0.02562 * 14 13 12 16 16 C 1.37911 * 120.43718 * 359.97438 * 15 14 13 17 17 C 1.39108 * 120.05061 * 359.74013 * 16 15 14 18 18 S 1.76205 * 120.18846 * 180.25704 * 17 16 15 19 19 C 1.76197 * 100.00119 * 6.86977 * 18 17 16 20 20 H 1.08002 * 119.99945 * 5.65606 * 19 18 17 21 21 C 1.38805 * 120.00099 * 185.66069 * 19 18 17 22 22 N 1.31549 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47316 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47232 * 120.00002 * 23 21 19 26 26 H 1.48500 * 109.47090 * 239.99569 * 23 21 19 27 27 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46730 * 300.00042 * 1 2 3 29 29 H 1.09005 * 109.47041 * 59.99356 * 1 2 3 30 30 H 1.09000 * 109.46716 * 299.99239 * 6 5 3 31 31 H 1.08998 * 109.47252 * 59.99543 * 6 5 3 32 32 H 1.08994 * 109.46535 * 179.97438 * 6 5 3 33 33 H 0.96696 * 114.00192 * 60.00758 * 7 5 3 34 34 H 1.09003 * 109.47602 * 300.00375 * 8 5 3 35 35 H 1.09000 * 109.47311 * 60.00120 * 8 5 3 36 36 H 0.96995 * 119.99886 * 359.97438 * 9 8 5 37 37 H 1.08005 * 120.02526 * 359.95188 * 13 12 10 38 38 H 1.07994 * 119.81678 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.78031 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.97420 * 180.02562 * 16 15 14 41 41 H 0.97000 * 120.00332 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0829 1.1755 1.4362 7 8 4.0994 0.1977 -0.7739 8 6 4.0071 2.6071 -0.6100 9 7 5.4701 2.6835 -0.6111 10 6 6.0875 3.7755 -1.1041 11 8 5.4302 4.6971 -1.5483 12 6 7.5597 3.8526 -1.1046 13 6 8.3192 2.7964 -0.5960 14 6 9.6950 2.8742 -0.5998 15 6 10.3325 3.9969 -1.1059 16 6 9.5980 5.0487 -1.6119 17 6 8.2084 4.9867 -1.6224 18 16 7.2666 6.3257 -2.2743 19 6 8.5637 7.3208 -2.9313 20 1 9.5803 6.9562 -2.9248 21 6 8.2790 8.5735 -3.4571 22 7 7.0408 9.0175 -3.4654 23 14 9.6541 9.6282 -4.1543 24 1 10.9452 8.9054 -4.0278 25 1 9.3832 9.9114 -5.5867 26 1 9.7273 10.9066 -3.4023 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 3.6763 1.9971 2.0260 31 1 3.7689 0.2263 1.8704 32 1 5.1713 1.2321 1.4357 33 1 3.8134 0.1975 -1.6976 34 1 3.6391 2.6779 -1.6337 35 1 3.6005 3.4287 -0.0203 36 1 5.9944 1.9486 -0.2565 37 1 7.8285 1.9197 -0.1997 38 1 10.2802 2.0566 -0.2056 39 1 11.4113 4.0478 -1.1037 40 1 10.1022 5.9193 -2.0046 41 1 6.8418 9.8927 -3.8332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362322106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:36 Heat of formation + Delta-G solvation = -161.685264 kcal Electronic energy + Delta-G solvation = -26588.804391 eV Core-core repulsion = 22559.510431 eV Total energy + Delta-G solvation = -4029.293959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06135 -40.98635 -39.22659 -38.54219 -37.67648 -35.50036 -34.76293 -32.89737 -31.78512 -31.72977 -28.84591 -28.00067 -27.83011 -25.28311 -24.02230 -23.33088 -21.70417 -21.54045 -20.02740 -19.61465 -18.90524 -18.14441 -17.70161 -17.44174 -17.09648 -16.85326 -16.53698 -16.39935 -15.71020 -15.49615 -15.43281 -15.31364 -15.03313 -14.68686 -14.39691 -14.24173 -13.84336 -13.59627 -13.44169 -13.37544 -13.29493 -13.02587 -12.99453 -12.86282 -12.74366 -12.53047 -12.05133 -11.95689 -11.88903 -11.50978 -11.42447 -11.33512 -11.16811 -10.40456 -10.23122 -9.92433 -9.76112 -8.46344 -8.44914 -6.24092 0.04417 0.56345 0.85044 1.27052 1.31433 1.35419 1.46038 1.65825 2.00525 2.18167 2.30230 2.87971 2.92145 3.05579 3.20555 3.25607 3.54211 3.65757 3.92945 4.04239 4.25674 4.28846 4.29456 4.40837 4.54007 4.63680 4.64149 4.68020 4.69273 4.74535 4.87438 5.06057 5.13181 5.18972 5.33918 5.37640 5.47882 5.58880 5.70014 6.11222 6.18001 6.28930 6.55199 6.60697 6.96326 7.31804 8.60745 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002796 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.956470 B =10011.846337 C =11454.408075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.345 6.345 3 C 0.443 3.557 4 O -0.526 6.526 5 C 0.156 3.844 6 C -0.144 4.144 7 O -0.529 6.529 8 C 0.110 3.890 9 N -0.702 5.702 10 C 0.548 3.452 11 O -0.555 6.555 12 C -0.180 4.180 13 C -0.051 4.051 14 C -0.156 4.156 15 C -0.069 4.069 16 C -0.175 4.175 17 C -0.072 4.072 18 S 0.060 5.940 19 C -0.600 4.600 20 H 0.095 0.905 21 C 0.023 3.977 22 N -0.906 5.906 23 Si 0.994 3.006 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.136 0.864 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 -23.654 9.870 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C 0.285 3.715 4 O -0.415 6.415 5 C 0.113 3.887 6 C -0.201 4.201 7 O -0.336 6.336 8 C -0.015 4.015 9 N -0.359 5.359 10 C 0.337 3.663 11 O -0.435 6.435 12 C -0.193 4.193 13 C -0.071 4.071 14 C -0.179 4.179 15 C -0.090 4.090 16 C -0.200 4.200 17 C -0.190 4.190 18 S 0.319 5.681 19 C -0.746 4.746 20 H 0.113 0.887 21 C -0.183 4.183 22 N -0.541 5.541 23 Si 0.815 3.185 24 H -0.180 1.180 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.257 0.743 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.654 -22.252 9.914 25.008 hybrid contribution 1.149 1.122 -1.105 1.949 sum -4.504 -21.130 8.810 23.332 Atomic orbital electron populations 1.23642 0.74674 1.06019 1.02621 1.86564 1.24900 1.31674 1.82873 1.24732 0.92891 0.81772 0.72101 1.90745 1.67666 1.37494 1.45558 1.21061 0.83797 0.87034 0.96841 1.21919 1.04185 1.04885 0.89144 1.86597 1.72656 1.47056 1.27340 1.21620 0.81475 0.96834 1.01610 1.45337 1.06001 1.20107 1.64425 1.18512 0.88099 0.82092 0.77569 1.90811 1.67010 1.38657 1.47037 1.19396 0.91867 0.96983 1.11095 1.21453 0.94607 0.95945 0.95114 1.21340 0.94114 0.99233 1.03182 1.21553 1.00806 0.92300 0.94298 1.21441 0.92425 1.01370 1.04787 1.22982 0.98189 0.98791 0.99029 1.84967 1.09486 1.12344 1.61298 1.24274 0.98048 1.05883 1.46426 0.88715 1.26162 0.99127 0.98084 0.94901 1.70140 1.20679 1.19921 1.43364 0.84979 0.77892 0.77638 0.77958 1.17957 1.19647 1.19533 0.84596 0.91792 0.92080 0.90044 0.88775 0.88287 0.75010 0.91805 0.91072 0.74334 0.82025 0.81516 0.83301 0.86443 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 113.37 1.20 1.47 16 2 O -0.34 -5.80 10.32 -46.39 -0.48 -6.28 16 3 C 0.44 9.14 6.80 71.24 0.48 9.63 16 4 O -0.53 -14.59 15.84 21.96 0.35 -14.24 16 5 C 0.16 2.74 1.01 -11.54 -0.01 2.73 16 6 C -0.14 -1.94 8.65 71.98 0.62 -1.32 16 7 O -0.53 -7.47 12.51 -135.70 -1.70 -9.17 16 8 C 0.11 2.76 4.31 86.38 0.37 3.13 16 9 N -0.70 -18.18 5.10 -466.38 -2.38 -20.56 16 10 C 0.55 21.05 7.75 86.66 0.67 21.72 16 11 O -0.56 -27.62 13.77 -4.05 -0.06 -27.68 16 12 C -0.18 -6.79 5.89 -19.95 -0.12 -6.91 16 13 C -0.05 -1.32 9.53 22.51 0.21 -1.11 16 14 C -0.16 -3.64 10.02 22.27 0.22 -3.42 16 15 C -0.07 -2.01 10.03 22.29 0.22 -1.79 16 16 C -0.18 -7.20 9.22 22.40 0.21 -7.00 16 17 C -0.07 -3.34 6.15 23.04 0.14 -3.20 16 18 S 0.06 3.50 18.56 -56.49 -1.05 2.46 16 19 C -0.60 -35.22 9.00 67.96 0.61 -34.61 16 20 H 0.10 5.24 4.98 -2.91 -0.01 5.23 16 21 C 0.02 1.31 5.49 84.87 0.47 1.78 16 22 N -0.91 -56.09 13.22 21.65 0.29 -55.81 16 23 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.13 -2.38 -0.02 0.76 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.07 6.86 -2.39 -0.02 1.05 16 33 H 0.40 3.83 9.04 -74.06 -0.67 3.16 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 36 H 0.42 7.60 5.22 -92.71 -0.48 7.11 16 37 H 0.16 2.53 6.40 -2.91 -0.02 2.51 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 40 H 0.12 5.27 5.03 -2.91 -0.01 5.25 16 41 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -84.97 363.28 2.26 -82.71 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.05 Total: 21.16 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 5.31 Total: -18.89 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.09 Total: -76.37 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -1.88 Total: -57.37 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.05 Total: 2.46 kcal Total: -84.97 2.26 -82.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362322106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.976 kcal (2) G-P(sol) polarization free energy of solvation -84.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds