Wall clock time and date at job start Tue Mar 31 2020 23:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99662 * 2 1 4 4 O 1.20821 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99753 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47208 * 85.00001 * 5 3 2 7 7 O 1.42900 * 109.46910 * 324.99549 * 5 3 2 8 8 C 1.52997 * 109.46939 * 204.99719 * 5 3 2 9 9 N 1.46497 * 109.47467 * 184.99556 * 8 5 3 10 10 C 1.34770 * 120.00541 * 180.02562 * 9 8 5 11 11 O 1.21609 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.47426 * 120.00338 * 180.02562 * 10 9 8 13 13 C 1.39674 * 120.21556 * 359.95430 * 12 10 9 14 14 C 1.37807 * 119.94090 * 179.97438 * 13 12 10 15 15 C 1.38658 * 120.38211 * 0.02762 * 14 13 12 16 16 C 1.37909 * 120.43495 * 0.02562 * 15 14 13 17 17 C 1.39117 * 120.05251 * 359.95695 * 16 15 14 18 18 S 1.76199 * 120.18881 * 180.02562 * 17 16 15 19 19 C 1.76204 * 99.99787 * 6.84709 * 18 17 16 20 20 H 1.08002 * 120.00676 * 5.64639 * 19 18 17 21 21 C 1.38808 * 119.99589 * 185.65232 * 19 18 17 22 22 N 1.31555 * 120.00428 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99707 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47378 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46935 * 120.00266 * 23 21 19 26 26 H 1.48508 * 109.47005 * 240.00142 * 23 21 19 27 27 H 1.08995 * 109.47016 * 60.00418 * 1 2 3 28 28 H 1.09001 * 109.46593 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47108 * 300.00058 * 1 2 3 30 30 H 1.09001 * 109.46965 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47003 * 299.99707 * 6 5 3 32 32 H 1.08991 * 109.47497 * 60.00122 * 6 5 3 33 33 H 0.96696 * 114.00031 * 299.99975 * 7 5 3 34 34 H 1.09008 * 109.46994 * 64.99831 * 8 5 3 35 35 H 1.09002 * 109.47404 * 305.00022 * 8 5 3 36 36 H 0.97006 * 119.99907 * 0.02562 * 9 8 5 37 37 H 1.08005 * 120.02970 * 0.04493 * 13 12 10 38 38 H 1.08004 * 119.80645 * 180.29578 * 14 13 12 39 39 H 1.07994 * 119.77880 * 179.97438 * 15 14 13 40 40 H 1.07999 * 119.96976 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00247 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0816 1.1764 -1.4378 7 8 4.1000 0.1977 0.7718 8 6 4.0074 2.6071 0.6091 9 7 5.4626 2.7360 0.5003 10 6 6.0790 3.8366 0.9746 11 8 5.4272 4.7230 1.4926 12 6 7.5434 3.9665 0.8647 13 6 8.2965 2.9513 0.2705 14 6 9.6650 3.0789 0.1702 15 6 10.3013 4.2107 0.6567 16 6 9.5732 5.2221 1.2472 17 6 8.1907 5.1123 1.3576 18 16 7.2568 6.4027 2.1108 19 6 8.5221 7.6097 2.3276 20 1 9.5098 7.4347 1.9272 21 6 8.2495 8.7855 3.0132 22 7 7.0466 8.9985 3.5015 23 14 9.5910 10.0647 3.2436 24 1 10.8443 9.5882 2.6055 25 1 9.1703 11.3422 2.6141 26 1 9.8248 10.2811 4.6942 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 5.1702 1.2330 -1.4381 31 1 3.7674 0.2273 -1.8721 32 1 3.6746 1.9981 -2.0269 33 1 3.8147 0.1970 1.6957 34 1 3.7172 2.6398 1.6593 35 1 3.5289 3.4276 0.0743 36 1 5.9826 2.0291 0.0868 37 1 7.8067 2.0675 -0.1109 38 1 10.2447 2.2947 -0.2939 39 1 11.3743 4.3004 0.5734 40 1 10.0766 6.1002 1.6239 41 1 6.8562 9.8199 3.9809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362322239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:40 Heat of formation + Delta-G solvation = -134.888982 kcal Electronic energy + Delta-G solvation = -26589.067280 eV Core-core repulsion = 22560.935295 eV Total energy + Delta-G solvation = -4028.131985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18883 -39.59016 -38.13134 -37.25578 -36.82998 -34.30789 -32.75614 -31.81987 -30.46351 -30.27557 -28.22354 -27.02194 -25.82928 -24.24998 -22.74575 -21.90150 -20.70658 -20.23959 -18.77954 -18.37276 -17.40780 -17.25756 -16.85781 -16.03987 -15.63844 -15.44104 -15.33438 -15.06872 -14.54851 -14.35116 -14.22085 -13.85018 -13.72541 -13.45656 -13.02976 -12.94134 -12.84869 -12.76453 -12.65857 -12.35461 -12.04568 -11.82294 -11.59663 -11.24821 -11.21708 -11.16962 -11.10797 -10.91785 -10.39343 -10.31124 -9.82564 -9.67944 -9.51560 -8.87950 -8.73690 -8.34397 -8.07803 -6.54207 -6.46471 -4.17108 1.51898 1.70423 2.01622 2.12587 3.10572 3.11885 3.20478 3.39752 3.45273 3.49248 3.67108 4.06073 4.10513 4.33296 4.41973 4.49706 4.74813 4.83049 4.94682 5.11681 5.14549 5.19865 5.29125 5.34018 5.37813 5.47507 5.59912 5.69547 5.70635 5.94202 5.95988 6.11064 6.37966 6.57464 6.61222 6.84049 6.96209 7.01895 7.12984 7.35230 7.44577 7.58700 7.82596 8.16337 8.73581 8.99906 10.56846 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002795 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.446438 B =10015.123740 C =11461.754999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.439 3.561 4 O -0.489 6.489 5 C 0.141 3.859 6 C -0.142 4.142 7 O -0.533 6.533 8 C 0.109 3.891 9 N -0.732 5.732 10 C 0.553 3.447 11 O -0.506 6.506 12 C -0.177 4.177 13 C -0.060 4.060 14 C -0.186 4.186 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.056 4.056 18 S 0.185 5.815 19 C -0.595 4.595 20 H 0.092 0.908 21 C 0.083 3.917 22 N -0.857 5.857 23 Si 0.920 3.080 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.387 0.613 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -19.196 -8.086 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.279 3.721 4 O -0.375 6.375 5 C 0.098 3.902 6 C -0.199 4.199 7 O -0.339 6.339 8 C -0.016 4.016 9 N -0.389 5.389 10 C 0.343 3.657 11 O -0.383 6.383 12 C -0.192 4.192 13 C -0.080 4.080 14 C -0.211 4.211 15 C -0.098 4.098 16 C -0.178 4.178 17 C -0.176 4.176 18 S 0.449 5.551 19 C -0.742 4.742 20 H 0.109 0.891 21 C -0.128 4.128 22 N -0.490 5.490 23 Si 0.745 3.255 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.153 -17.830 -7.667 21.052 hybrid contribution 1.856 0.480 0.172 1.925 sum -6.296 -17.351 -7.496 19.922 Atomic orbital electron populations 1.23348 0.76224 1.03902 1.02786 1.86581 1.23398 1.32771 1.83495 1.24558 0.92531 0.81865 0.73127 1.90745 1.66791 1.36257 1.43730 1.21304 0.84269 0.88734 0.95928 1.21826 1.03420 1.04084 0.90600 1.86613 1.72902 1.48074 1.26348 1.21649 0.82812 0.95189 1.01933 1.45700 1.06187 1.22382 1.64643 1.18320 0.87767 0.81293 0.78339 1.90806 1.66113 1.38693 1.42667 1.19031 0.91452 0.97695 1.11052 1.20894 0.94183 0.96293 0.96658 1.20638 0.94237 0.99276 1.06947 1.21091 0.98962 0.93539 0.96246 1.21439 0.93076 1.00466 1.02810 1.23086 0.97550 0.98849 0.98154 1.84775 1.08801 1.01755 1.59750 1.24096 1.01731 1.06130 1.42209 0.89062 1.25108 0.96383 0.97838 0.93478 1.69984 1.19870 1.26202 1.32949 0.86095 0.80907 0.80173 0.78331 1.19142 1.20236 1.20231 0.91737 0.87869 0.91679 0.89575 0.90345 0.89745 0.76378 0.90593 0.88984 0.76434 0.87152 0.87023 0.87001 0.84353 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.24 10.32 -44.43 -0.46 -3.70 16 3 C 0.44 4.73 6.80 36.00 0.24 4.98 16 4 O -0.49 -6.68 15.74 -18.75 -0.29 -6.97 16 5 C 0.14 1.37 1.02 -91.78 -0.09 1.27 16 6 C -0.14 -1.17 8.60 37.16 0.32 -0.85 16 7 O -0.53 -4.64 12.72 -49.12 -0.62 -5.27 16 8 C 0.11 1.38 4.45 -4.04 -0.02 1.37 16 9 N -0.73 -10.09 5.14 -61.38 -0.32 -10.41 16 10 C 0.55 10.55 7.75 -12.52 -0.10 10.45 16 11 O -0.51 -11.78 13.77 5.27 0.07 -11.71 16 12 C -0.18 -3.44 5.89 -104.76 -0.62 -4.06 16 13 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 14 C -0.19 -2.81 10.02 -39.58 -0.40 -3.21 16 15 C -0.08 -1.28 10.03 -39.55 -0.40 -1.68 16 16 C -0.15 -3.16 9.22 -39.38 -0.36 -3.53 16 17 C -0.06 -1.28 6.14 -38.39 -0.24 -1.51 16 18 S 0.18 4.94 18.56 -107.50 -2.00 2.95 16 19 C -0.60 -16.37 9.00 30.94 0.28 -16.09 16 20 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 21 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 22 N -0.86 -24.75 13.22 55.49 0.73 -24.02 16 23 Si 0.92 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.09 0.64 6.58 -51.93 -0.34 0.30 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.39 2.36 9.04 45.56 0.41 2.77 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.09 1.33 7.69 -51.93 -0.40 0.93 16 36 H 0.40 4.45 5.02 -40.82 -0.20 4.24 16 37 H 0.11 1.28 6.40 -52.48 -0.34 0.94 16 38 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.14 2.99 5.04 -52.49 -0.26 2.73 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -34.42 362.83 -7.13 -41.55 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.91 Total: 7.16 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.78 Total: -10.71 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.42 Total: -34.43 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.31 Total: -27.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.42 -7.13 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362322239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.338 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds