Wall clock time and date at job start Tue Mar 31 2020 23:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99662 * 2 1 4 4 O 1.20821 * 119.99945 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99753 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47208 * 85.00001 * 5 3 2 7 7 O 1.42900 * 109.46910 * 324.99549 * 5 3 2 8 8 C 1.52997 * 109.46939 * 204.99719 * 5 3 2 9 9 N 1.46497 * 109.47467 * 184.99556 * 8 5 3 10 10 C 1.34770 * 120.00541 * 180.02562 * 9 8 5 11 11 O 1.21609 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.47426 * 120.00338 * 180.02562 * 10 9 8 13 13 C 1.39674 * 120.21556 * 359.95430 * 12 10 9 14 14 C 1.37807 * 119.94090 * 179.97438 * 13 12 10 15 15 C 1.38658 * 120.38211 * 0.02762 * 14 13 12 16 16 C 1.37909 * 120.43495 * 0.02562 * 15 14 13 17 17 C 1.39117 * 120.05251 * 359.95695 * 16 15 14 18 18 S 1.76199 * 120.18881 * 180.02562 * 17 16 15 19 19 C 1.76204 * 99.99787 * 6.84709 * 18 17 16 20 20 H 1.08002 * 120.00676 * 5.64639 * 19 18 17 21 21 C 1.38808 * 119.99589 * 185.65232 * 19 18 17 22 22 N 1.31555 * 120.00428 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99707 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47378 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46935 * 120.00266 * 23 21 19 26 26 H 1.48508 * 109.47005 * 240.00142 * 23 21 19 27 27 H 1.08995 * 109.47016 * 60.00418 * 1 2 3 28 28 H 1.09001 * 109.46593 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47108 * 300.00058 * 1 2 3 30 30 H 1.09001 * 109.46965 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47003 * 299.99707 * 6 5 3 32 32 H 1.08991 * 109.47497 * 60.00122 * 6 5 3 33 33 H 0.96696 * 114.00031 * 299.99975 * 7 5 3 34 34 H 1.09008 * 109.46994 * 64.99831 * 8 5 3 35 35 H 1.09002 * 109.47404 * 305.00022 * 8 5 3 36 36 H 0.97006 * 119.99907 * 0.02562 * 9 8 5 37 37 H 1.08005 * 120.02970 * 0.04493 * 13 12 10 38 38 H 1.08004 * 119.80645 * 180.29578 * 14 13 12 39 39 H 1.07994 * 119.77880 * 179.97438 * 15 14 13 40 40 H 1.07999 * 119.96976 * 179.97438 * 16 15 14 41 41 H 0.96998 * 120.00247 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0816 1.1764 -1.4378 7 8 4.1000 0.1977 0.7718 8 6 4.0074 2.6071 0.6091 9 7 5.4626 2.7360 0.5003 10 6 6.0790 3.8366 0.9746 11 8 5.4272 4.7230 1.4926 12 6 7.5434 3.9665 0.8647 13 6 8.2965 2.9513 0.2705 14 6 9.6650 3.0789 0.1702 15 6 10.3013 4.2107 0.6567 16 6 9.5732 5.2221 1.2472 17 6 8.1907 5.1123 1.3576 18 16 7.2568 6.4027 2.1108 19 6 8.5221 7.6097 2.3276 20 1 9.5098 7.4347 1.9272 21 6 8.2495 8.7855 3.0132 22 7 7.0466 8.9985 3.5015 23 14 9.5910 10.0647 3.2436 24 1 10.8443 9.5882 2.6055 25 1 9.1703 11.3422 2.6141 26 1 9.8248 10.2811 4.6942 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 5.1702 1.2330 -1.4381 31 1 3.7674 0.2273 -1.8721 32 1 3.6746 1.9981 -2.0269 33 1 3.8147 0.1970 1.6957 34 1 3.7172 2.6398 1.6593 35 1 3.5289 3.4276 0.0743 36 1 5.9826 2.0291 0.0868 37 1 7.8067 2.0675 -0.1109 38 1 10.2447 2.2947 -0.2939 39 1 11.3743 4.3004 0.5734 40 1 10.0766 6.1002 1.6239 41 1 6.8562 9.8199 3.9809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362322239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:39 Heat of formation + Delta-G solvation = -160.940147 kcal Electronic energy + Delta-G solvation = -26590.196943 eV Core-core repulsion = 22560.935295 eV Total energy + Delta-G solvation = -4029.261649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.06659 -40.98912 -39.22841 -38.54389 -37.67798 -35.53337 -34.76201 -32.87584 -31.78118 -31.71905 -28.84371 -28.03310 -27.83160 -25.29851 -24.01519 -23.33290 -21.69214 -21.53940 -20.03542 -19.62248 -18.91232 -18.14582 -17.70705 -17.44617 -17.09587 -16.85710 -16.52798 -16.40050 -15.72211 -15.52007 -15.40946 -15.31863 -15.02944 -14.68640 -14.41011 -14.25332 -13.83411 -13.59464 -13.43498 -13.37376 -13.29587 -13.02596 -12.99380 -12.86209 -12.74847 -12.53008 -12.05091 -11.95954 -11.88955 -11.50884 -11.42442 -11.34133 -11.16385 -10.40572 -10.23089 -9.92508 -9.76304 -8.46246 -8.45056 -6.24078 0.04323 0.56168 0.84870 1.27042 1.31660 1.35403 1.46011 1.65796 2.00436 2.18122 2.30276 2.87854 2.91544 3.05523 3.20625 3.25508 3.54364 3.65078 3.92311 4.03890 4.25652 4.28884 4.29341 4.40013 4.54141 4.63188 4.63677 4.67847 4.68931 4.74287 4.87302 5.05264 5.13112 5.18877 5.34047 5.37510 5.47745 5.58730 5.69894 6.11168 6.17910 6.29165 6.54859 6.60377 6.96292 7.31434 8.60709 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002795 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.446438 B =10015.123740 C =11461.754999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.345 6.345 3 C 0.443 3.557 4 O -0.526 6.526 5 C 0.156 3.844 6 C -0.145 4.145 7 O -0.529 6.529 8 C 0.109 3.891 9 N -0.703 5.703 10 C 0.548 3.452 11 O -0.555 6.555 12 C -0.180 4.180 13 C -0.052 4.052 14 C -0.156 4.156 15 C -0.069 4.069 16 C -0.175 4.175 17 C -0.072 4.072 18 S 0.060 5.940 19 C -0.600 4.600 20 H 0.095 0.905 21 C 0.023 3.977 22 N -0.906 5.906 23 Si 0.994 3.006 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.416 0.584 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -23.411 -10.353 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C 0.285 3.715 4 O -0.414 6.414 5 C 0.112 3.888 6 C -0.202 4.202 7 O -0.337 6.337 8 C -0.016 4.016 9 N -0.359 5.359 10 C 0.337 3.663 11 O -0.435 6.435 12 C -0.194 4.194 13 C -0.072 4.072 14 C -0.179 4.179 15 C -0.090 4.090 16 C -0.200 4.200 17 C -0.190 4.190 18 S 0.319 5.681 19 C -0.746 4.746 20 H 0.113 0.887 21 C -0.183 4.183 22 N -0.541 5.541 23 Si 0.815 3.185 24 H -0.180 1.180 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.256 0.744 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.679 -22.201 -9.996 25.001 hybrid contribution 1.122 1.321 0.686 1.864 sum -4.557 -20.881 -9.310 23.312 Atomic orbital electron populations 1.23643 0.74668 1.06022 1.02626 1.86567 1.24906 1.31661 1.82879 1.24721 0.92884 0.81772 0.72106 1.90743 1.67647 1.37499 1.45548 1.21052 0.83814 0.87042 0.96864 1.21919 1.04153 1.04954 0.89159 1.86601 1.72685 1.47086 1.27340 1.21644 0.81706 0.96777 1.01500 1.45378 1.06769 1.21038 1.62752 1.18517 0.87957 0.81810 0.78008 1.90811 1.66999 1.40815 1.44879 1.19398 0.92067 0.97582 1.10307 1.21452 0.94645 0.96327 0.94734 1.21340 0.94204 0.99009 1.03303 1.21550 1.00763 0.92535 0.94110 1.21444 0.92524 1.01546 1.04498 1.22980 0.98130 0.98563 0.99322 1.84963 1.11941 1.05795 1.65390 1.24276 1.01505 1.06582 1.42262 0.88711 1.26165 0.98823 1.00080 0.93209 1.70141 1.22206 1.27003 1.34755 0.84980 0.77907 0.77080 0.78499 1.17958 1.19681 1.19494 0.91795 0.84597 0.92066 0.88264 0.88713 0.90005 0.75002 0.91593 0.91114 0.74367 0.82038 0.81500 0.83291 0.86435 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 113.37 1.20 1.47 16 2 O -0.34 -5.80 10.32 -46.49 -0.48 -6.28 16 3 C 0.44 9.15 6.80 71.24 0.48 9.63 16 4 O -0.53 -14.58 15.74 21.98 0.35 -14.24 16 5 C 0.16 2.74 1.02 -11.54 -0.01 2.73 16 6 C -0.14 -1.94 8.60 71.98 0.62 -1.32 16 7 O -0.53 -7.58 12.72 -135.70 -1.73 -9.31 16 8 C 0.11 2.74 4.45 86.38 0.38 3.13 16 9 N -0.70 -18.27 5.14 -466.37 -2.40 -20.67 16 10 C 0.55 21.08 7.75 86.66 0.67 21.76 16 11 O -0.56 -27.64 13.77 -4.06 -0.06 -27.69 16 12 C -0.18 -6.81 5.89 -19.95 -0.12 -6.92 16 13 C -0.05 -1.33 9.53 22.51 0.21 -1.12 16 14 C -0.16 -3.64 10.02 22.27 0.22 -3.42 16 15 C -0.07 -2.01 10.03 22.29 0.22 -1.79 16 16 C -0.17 -7.20 9.22 22.40 0.21 -6.99 16 17 C -0.07 -3.35 6.14 23.04 0.14 -3.21 16 18 S 0.06 3.51 18.56 -56.49 -1.05 2.46 16 19 C -0.60 -35.23 9.00 67.96 0.61 -34.62 16 20 H 0.10 5.25 4.98 -2.91 -0.01 5.23 16 21 C 0.02 1.31 5.49 84.87 0.47 1.78 16 22 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 23 Si 0.99 44.29 29.55 68.60 2.03 46.31 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.10 1.04 6.58 -2.39 -0.02 1.03 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.40 3.85 9.04 -74.06 -0.67 3.18 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 2.15 7.69 -2.39 -0.02 2.13 16 36 H 0.42 7.60 5.02 -92.70 -0.47 7.14 16 37 H 0.16 2.52 6.40 -2.91 -0.02 2.50 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 40 H 0.12 5.27 5.04 -2.91 -0.01 5.26 16 41 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -85.14 362.83 2.24 -82.90 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.03 Total: 21.21 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.31 Total: -18.89 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.11 Total: -76.47 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -1.92 Total: -57.52 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.05 Total: 2.46 kcal Total: -85.14 2.24 -82.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362322239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.041 kcal (2) G-P(sol) polarization free energy of solvation -85.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds