Wall clock time and date at job start Tue Mar 31 2020 22:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99882 * 3 2 1 7 7 C 1.40273 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 170.76064 * 7 2 1 9 9 C 1.40886 * 120.00269 * 350.76747 * 7 2 1 10 10 C 1.40714 * 120.32561 * 325.81783 * 9 7 2 11 11 C 1.37598 * 119.88035 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57332 * 0.02562 * 11 10 9 13 13 C 1.38225 * 120.67244 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09645 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.28404 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00024 * 174.16561 * 15 14 13 17 17 N 1.34778 * 119.99717 * 354.16023 * 15 14 13 18 18 C 1.46501 * 119.99494 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 15 20 20 O 1.42908 * 110.01221 * 64.29520 * 19 18 17 21 21 C 1.53869 * 110.02701 * 185.67747 * 19 18 17 22 22 C 1.54172 * 108.70397 * 166.47596 * 21 19 18 23 23 S 1.82922 * 105.08095 * 332.08569 * 22 21 19 24 24 O 1.42109 * 109.34787 * 115.52586 * 23 22 21 25 25 O 1.42097 * 109.35615 * 248.59145 * 23 22 21 26 26 C 1.55045 * 110.02874 * 302.91984 * 19 18 17 27 27 H 0.96998 * 120.00362 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05504 * 0.04920 * 10 9 7 29 29 H 1.08000 * 119.71058 * 180.28436 * 11 10 9 30 30 H 1.07994 * 119.66468 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.95168 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99975 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46933 * 299.99554 * 18 17 15 34 34 H 1.08997 * 109.47291 * 59.99880 * 18 17 15 35 35 H 0.96698 * 114.00105 * 300.70685 * 20 19 18 36 36 H 1.09005 * 109.64863 * 286.31922 * 21 19 18 37 37 H 1.08989 * 109.65226 * 46.62039 * 21 19 18 38 38 H 1.08995 * 110.32417 * 90.98924 * 22 21 19 39 39 H 1.09004 * 110.31525 * 213.18865 * 22 21 19 40 40 H 1.09006 * 110.78831 * 316.54704 * 26 19 18 41 41 H 1.09009 * 110.79293 * 79.99861 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3169 -2.4269 0.1968 10 6 0.1989 -2.4775 1.0497 11 6 -0.4686 -3.6664 1.2352 12 6 -0.0487 -4.8204 0.5879 13 6 1.0466 -4.7972 -0.2550 14 6 1.7426 -3.6095 -0.4629 15 6 2.9110 -3.5800 -1.3615 16 8 3.4505 -2.5219 -1.6230 17 7 3.3814 -4.7257 -1.8931 18 6 4.5428 -4.6963 -2.7856 19 6 4.8687 -6.1188 -3.2455 20 8 3.7924 -6.6379 -4.0293 21 6 6.1690 -6.1218 -4.0681 22 6 6.6518 -7.5776 -4.2245 23 16 6.0142 -8.4515 -2.7494 24 8 5.0768 -9.4392 -3.1559 25 8 7.1017 -8.8114 -1.9086 26 6 5.1180 -7.0302 -2.0163 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1349 -1.5847 1.5575 29 1 -1.3292 -3.7011 1.8869 30 1 -0.5836 -5.7455 0.7437 31 1 1.3630 -5.7019 -0.7531 32 1 2.9509 -5.5696 -1.6848 33 1 4.3186 -4.0760 -3.6533 34 1 5.3992 -4.2816 -2.2539 35 1 2.9463 -6.6716 -3.5624 36 1 5.9817 -5.6903 -5.0514 37 1 6.9303 -5.5367 -3.5523 38 1 6.2397 -8.0175 -5.1326 39 1 7.7410 -7.6150 -4.2452 40 1 5.7376 -6.5221 -1.2772 41 1 4.1744 -7.3525 -1.5757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362559794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:36 Heat of formation + Delta-G solvation = -130.343262 kcal Electronic energy + Delta-G solvation = -27356.988732 eV Core-core repulsion = 23329.053863 eV Total energy + Delta-G solvation = -4027.934868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81079 -38.52056 -37.25805 -36.77646 -36.25358 -34.21699 -34.05797 -33.46693 -30.48022 -29.93342 -29.46714 -27.41747 -25.52777 -24.22716 -22.14147 -21.13361 -20.80043 -19.79360 -19.04657 -18.04316 -17.51568 -17.09555 -16.34714 -16.21871 -15.73172 -15.50360 -15.28228 -15.09616 -14.61937 -14.37627 -14.17614 -14.08214 -13.68017 -13.23218 -13.16409 -12.81874 -12.75589 -12.44234 -12.39943 -12.26524 -12.18816 -11.88605 -11.73482 -11.56926 -11.31096 -11.19787 -11.07483 -10.82402 -10.74349 -10.60342 -10.29727 -10.15692 -9.75866 -9.35433 -8.64732 -8.53783 -7.68509 -7.44966 -6.87629 -4.47278 -0.25328 2.21182 2.25369 2.72566 3.05876 3.14422 3.15895 3.21467 3.49397 3.55955 3.72221 3.91540 3.96754 4.04740 4.10159 4.33448 4.44902 4.59775 4.62227 4.94037 5.14025 5.25913 5.37341 5.45746 5.51452 5.62241 5.68928 5.86068 6.05147 6.20858 6.50615 6.84134 6.86477 7.03419 7.12872 7.14479 7.37011 7.52505 7.78138 7.88333 8.08175 8.18196 8.57515 8.73566 8.80577 9.23713 10.07592 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.003024 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.181284 B = 9257.232994 C =10297.280483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.415 4.415 8 H 0.105 0.895 9 C 0.146 3.854 10 C -0.146 4.146 11 C -0.095 4.095 12 C -0.244 4.244 13 C -0.058 4.058 14 C -0.265 4.265 15 C 0.567 3.433 16 O -0.533 6.533 17 N -0.751 5.751 18 C 0.112 3.888 19 C 0.126 3.874 20 O -0.544 6.544 21 C -0.097 4.097 22 C -0.586 4.586 23 S 2.395 3.605 24 O -0.930 6.930 25 O -0.941 6.941 26 C -0.624 4.624 27 H 0.282 0.718 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.388 0.612 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.389 0.611 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -10.304 -5.997 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.444 4.444 8 H 0.123 0.877 9 C 0.142 3.858 10 C -0.166 4.166 11 C -0.114 4.114 12 C -0.263 4.263 13 C -0.077 4.077 14 C -0.270 4.270 15 C 0.361 3.639 16 O -0.411 6.411 17 N -0.408 5.408 18 C -0.014 4.014 19 C 0.083 3.917 20 O -0.352 6.352 21 C -0.136 4.136 22 C -0.716 4.716 23 S 2.578 3.422 24 O -0.927 6.927 25 O -0.938 6.938 26 C -0.753 4.753 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.223 0.777 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.981 -10.352 -6.345 15.717 hybrid contribution -0.672 1.093 0.211 1.300 sum 9.309 -9.259 -6.133 14.492 Atomic orbital electron populations 1.69713 1.07794 1.29628 1.34433 1.26134 0.94802 1.01856 0.92156 0.86102 0.81244 0.80141 0.78391 1.18044 1.19858 1.19834 1.20211 0.97384 0.89476 1.37283 0.87683 1.17474 0.89968 0.91299 0.87062 1.21378 0.98481 0.96382 1.00322 1.20813 0.98221 0.93551 0.98810 1.20290 1.01795 0.97421 1.06831 1.20607 0.95293 0.94970 0.96833 1.19390 1.02733 0.96261 1.08619 1.18426 0.83761 0.82208 0.79497 1.90693 1.59785 1.29475 1.61162 1.45997 1.32902 1.10394 1.51518 1.21645 0.90814 0.93782 0.95169 1.22038 0.89220 0.92941 0.87485 1.86565 1.20289 1.85932 1.42374 1.21831 0.93963 0.94260 1.03533 1.30437 1.11987 1.08471 1.20706 1.08922 0.76673 0.77978 0.78661 1.93626 1.62390 1.54726 1.81935 1.93617 1.53069 1.81907 1.65230 1.31441 1.16027 1.19087 1.08745 0.90660 0.86438 0.89014 0.89032 0.89485 0.77673 0.90263 0.90522 0.76128 0.87574 0.87763 0.84105 0.84291 0.82950 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 11.14 55.56 0.62 -19.31 16 2 C 0.07 1.72 5.25 -17.30 -0.09 1.63 16 3 Si 0.92 19.03 29.57 -169.99 -5.03 14.00 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.42 -10.99 7.68 -37.82 -0.29 -11.28 16 8 H 0.11 2.87 5.92 -52.48 -0.31 2.56 16 9 C 0.15 3.76 5.51 -106.54 -0.59 3.17 16 10 C -0.15 -3.59 8.62 -38.88 -0.34 -3.92 16 11 C -0.10 -2.06 10.01 -39.60 -0.40 -2.46 16 12 C -0.24 -4.92 10.03 -39.37 -0.39 -5.32 16 13 C -0.06 -1.15 9.52 -39.22 -0.37 -1.52 16 14 C -0.27 -6.07 5.92 -104.37 -0.62 -6.69 16 15 C 0.57 11.95 7.72 -12.51 -0.10 11.85 16 16 O -0.53 -13.05 13.59 5.27 0.07 -12.98 16 17 N -0.75 -11.12 5.04 -61.38 -0.31 -11.43 16 18 C 0.11 1.33 4.87 -4.04 -0.02 1.31 16 19 C 0.13 1.08 0.77 -89.08 -0.07 1.01 16 20 O -0.54 -5.09 12.89 -35.23 -0.45 -5.54 16 21 C -0.10 -0.63 5.45 -25.67 -0.14 -0.77 16 22 C -0.59 -3.50 7.19 37.77 0.27 -3.22 16 23 S 2.39 20.78 6.02 -107.50 -0.65 20.13 16 24 O -0.93 -11.49 18.15 -57.73 -1.05 -12.54 16 25 O -0.94 -11.26 18.15 -57.73 -1.05 -12.31 16 26 C -0.62 -4.82 5.77 38.24 0.22 -4.60 16 27 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 28 H 0.12 2.95 6.59 -52.49 -0.35 2.61 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.35 6.44 -52.48 -0.34 1.01 16 32 H 0.39 4.71 4.97 -40.82 -0.20 4.51 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.39 2.97 8.20 45.56 0.37 3.34 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.48 8.07 -51.94 -0.42 0.06 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.15 1.03 8.10 -51.93 -0.42 0.60 16 41 H 0.14 0.97 7.55 -51.92 -0.39 0.58 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -35.40 351.12 -9.62 -45.01 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.15 Total: 10.47 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.92 Total: -20.79 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.31 Total: -30.74 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.48 Total: -43.37 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 20.78 SS G_CDS: -0.65 Total: 20.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.40 -9.62 -45.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362559794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.330 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds