Wall clock time and date at job start Tue Mar 31 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99882 * 3 2 1 7 7 C 1.40273 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 170.76064 * 7 2 1 9 9 C 1.40886 * 120.00269 * 350.76747 * 7 2 1 10 10 C 1.40714 * 120.32561 * 325.81783 * 9 7 2 11 11 C 1.37598 * 119.88035 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57332 * 0.02562 * 11 10 9 13 13 C 1.38225 * 120.67244 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09645 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.28404 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00024 * 174.16561 * 15 14 13 17 17 N 1.34778 * 119.99717 * 354.16023 * 15 14 13 18 18 C 1.46501 * 119.99494 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 15 20 20 O 1.42908 * 110.01221 * 64.29520 * 19 18 17 21 21 C 1.53869 * 110.02701 * 185.67747 * 19 18 17 22 22 C 1.54172 * 108.70397 * 166.47596 * 21 19 18 23 23 S 1.82922 * 105.08095 * 332.08569 * 22 21 19 24 24 O 1.42109 * 109.34787 * 115.52586 * 23 22 21 25 25 O 1.42097 * 109.35615 * 248.59145 * 23 22 21 26 26 C 1.55045 * 110.02874 * 302.91984 * 19 18 17 27 27 H 0.96998 * 120.00362 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05504 * 0.04920 * 10 9 7 29 29 H 1.08000 * 119.71058 * 180.28436 * 11 10 9 30 30 H 1.07994 * 119.66468 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.95168 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99975 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46933 * 299.99554 * 18 17 15 34 34 H 1.08997 * 109.47291 * 59.99880 * 18 17 15 35 35 H 0.96698 * 114.00105 * 300.70685 * 20 19 18 36 36 H 1.09005 * 109.64863 * 286.31922 * 21 19 18 37 37 H 1.08989 * 109.65226 * 46.62039 * 21 19 18 38 38 H 1.08995 * 110.32417 * 90.98924 * 22 21 19 39 39 H 1.09004 * 110.31525 * 213.18865 * 22 21 19 40 40 H 1.09006 * 110.78831 * 316.54704 * 26 19 18 41 41 H 1.09009 * 110.79293 * 79.99861 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3169 -2.4269 0.1968 10 6 0.1989 -2.4775 1.0497 11 6 -0.4686 -3.6664 1.2352 12 6 -0.0487 -4.8204 0.5879 13 6 1.0466 -4.7972 -0.2550 14 6 1.7426 -3.6095 -0.4629 15 6 2.9110 -3.5800 -1.3615 16 8 3.4505 -2.5219 -1.6230 17 7 3.3814 -4.7257 -1.8931 18 6 4.5428 -4.6963 -2.7856 19 6 4.8687 -6.1188 -3.2455 20 8 3.7924 -6.6379 -4.0293 21 6 6.1690 -6.1218 -4.0681 22 6 6.6518 -7.5776 -4.2245 23 16 6.0142 -8.4515 -2.7494 24 8 5.0768 -9.4392 -3.1559 25 8 7.1017 -8.8114 -1.9086 26 6 5.1180 -7.0302 -2.0163 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1349 -1.5847 1.5575 29 1 -1.3292 -3.7011 1.8869 30 1 -0.5836 -5.7455 0.7437 31 1 1.3630 -5.7019 -0.7531 32 1 2.9509 -5.5696 -1.6848 33 1 4.3186 -4.0760 -3.6533 34 1 5.3992 -4.2816 -2.2539 35 1 2.9463 -6.6716 -3.5624 36 1 5.9817 -5.6903 -5.0514 37 1 6.9303 -5.5367 -3.5523 38 1 6.2397 -8.0175 -5.1326 39 1 7.7410 -7.6150 -4.2452 40 1 5.7376 -6.5221 -1.2772 41 1 4.1744 -7.3525 -1.5757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362559794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:35 Heat of formation + Delta-G solvation = -159.589474 kcal Electronic energy + Delta-G solvation = -27358.256943 eV Core-core repulsion = 23329.053863 eV Total energy + Delta-G solvation = -4029.203079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00718 -39.75990 -38.42532 -38.04637 -37.05358 -35.74232 -35.04976 -34.72089 -31.94859 -31.52772 -30.52946 -28.42243 -27.20583 -25.16384 -23.63734 -22.65508 -21.73676 -21.21235 -19.84517 -19.47610 -18.70327 -18.09958 -17.33756 -17.15142 -17.05204 -16.76809 -16.43324 -16.09803 -15.96049 -15.64528 -15.31306 -15.02440 -14.94096 -14.70547 -14.49445 -14.02682 -13.90845 -13.55588 -13.39499 -13.29813 -13.15436 -13.06240 -12.85878 -12.80594 -12.53564 -12.38527 -12.34670 -12.30261 -12.00322 -11.89581 -11.52960 -11.43354 -11.14286 -11.02455 -10.28854 -10.00258 -9.39225 -9.22591 -8.67222 -6.35859 -0.91088 0.52215 1.01436 1.34668 1.48358 1.50119 1.58582 2.21159 2.32059 2.35279 2.60656 2.79385 2.89219 3.07936 3.27684 3.43440 3.64156 3.73535 3.88358 3.99705 4.31892 4.33155 4.38091 4.58537 4.62031 4.63291 4.72845 4.79923 4.94198 4.94591 5.02506 5.09942 5.24802 5.34817 5.58775 5.62662 5.82268 6.05343 6.11623 6.34409 6.49720 6.63068 6.78259 6.92391 6.99794 7.64756 8.30334 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.003024 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.181284 B = 9257.232994 C =10297.280483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.179 4.179 11 C -0.093 4.093 12 C -0.237 4.237 13 C -0.054 4.054 14 C -0.281 4.281 15 C 0.563 3.437 16 O -0.574 6.574 17 N -0.728 5.728 18 C 0.108 3.892 19 C 0.134 3.866 20 O -0.552 6.552 21 C -0.103 4.103 22 C -0.563 4.563 23 S 2.400 3.600 24 O -0.972 6.972 25 O -0.979 6.979 26 C -0.622 4.622 27 H 0.288 0.712 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.404 0.596 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.395 0.605 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 -12.066 -6.918 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.198 4.198 11 C -0.112 4.112 12 C -0.256 4.256 13 C -0.072 4.072 14 C -0.286 4.286 15 C 0.356 3.644 16 O -0.455 6.455 17 N -0.383 5.383 18 C -0.017 4.017 19 C 0.091 3.909 20 O -0.361 6.361 21 C -0.141 4.141 22 C -0.696 4.696 23 S 2.588 3.412 24 O -0.969 6.969 25 O -0.976 6.976 26 C -0.752 4.752 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.549 -12.204 -7.249 17.685 hybrid contribution -0.877 1.428 0.444 1.734 sum 9.672 -10.776 -6.805 15.999 Atomic orbital electron populations 1.69746 1.08685 1.30532 1.36110 1.26794 0.95568 1.04383 0.91611 0.85210 0.79213 0.76578 0.79016 1.19087 1.19284 1.18162 1.20169 0.96662 0.91112 1.40595 0.89805 1.17858 0.90844 0.92363 0.87792 1.21307 0.99752 0.97112 1.01642 1.21176 0.98305 0.93084 0.98623 1.20806 1.01440 0.98187 1.05193 1.21079 0.94385 0.95546 0.96239 1.19831 1.03649 0.96638 1.08455 1.18337 0.83393 0.83139 0.79502 1.90674 1.60882 1.31490 1.62487 1.45654 1.33125 1.09177 1.50392 1.21844 0.89531 0.96165 0.94135 1.22003 0.90059 0.90652 0.88157 1.86579 1.20874 1.85738 1.42886 1.21996 0.93307 0.94818 1.03993 1.30294 1.13594 1.07176 1.18518 1.08536 0.75678 0.77944 0.79080 1.93570 1.63522 1.57170 1.82653 1.93568 1.54022 1.83036 1.67002 1.31442 1.16763 1.18206 1.08795 0.90102 0.88436 0.86554 0.85078 0.84591 0.75840 0.91310 0.90071 0.75394 0.86709 0.85499 0.83150 0.81636 0.81710 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.44 11.14 21.88 0.24 -43.19 16 2 C 0.03 1.62 5.25 85.37 0.45 2.07 16 3 Si 0.98 40.68 29.57 68.60 2.03 42.71 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.46 -25.48 7.68 23.41 0.18 -25.30 16 8 H 0.08 4.89 5.92 -2.91 -0.02 4.88 16 9 C 0.12 6.12 5.51 -21.11 -0.12 6.00 16 10 C -0.18 -8.99 8.62 22.72 0.20 -8.80 16 11 C -0.09 -3.92 10.01 22.26 0.22 -3.70 16 12 C -0.24 -8.75 10.03 22.41 0.22 -8.53 16 13 C -0.05 -1.98 9.52 22.50 0.21 -1.76 16 14 C -0.28 -12.77 5.92 -19.70 -0.12 -12.89 16 15 C 0.56 23.62 7.72 86.67 0.67 24.28 16 16 O -0.57 -28.89 13.59 -4.05 -0.06 -28.94 16 17 N -0.73 -20.05 5.04 -466.35 -2.35 -22.40 16 18 C 0.11 2.36 4.87 86.38 0.42 2.78 16 19 C 0.13 1.91 0.77 -9.80 -0.01 1.91 16 20 O -0.55 -8.74 12.89 -148.98 -1.92 -10.66 16 21 C -0.10 -0.95 5.45 31.28 0.17 -0.78 16 22 C -0.56 -4.76 7.19 72.38 0.52 -4.24 16 23 S 2.40 37.04 6.02 -56.49 -0.34 36.70 16 24 O -0.97 -22.84 18.15 -127.47 -2.31 -25.15 16 25 O -0.98 -22.21 18.15 -127.47 -2.31 -24.52 16 26 C -0.62 -7.87 5.77 72.68 0.42 -7.45 16 27 H 0.29 13.71 8.29 -92.71 -0.77 12.95 16 28 H 0.10 5.18 6.59 -2.91 -0.02 5.16 16 29 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 31 H 0.14 3.54 6.44 -2.91 -0.02 3.52 16 32 H 0.40 8.44 4.97 -92.71 -0.46 7.98 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.75 8.11 -2.39 -0.02 1.74 16 35 H 0.40 4.84 8.20 -74.06 -0.61 4.23 16 36 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.13 0.65 8.07 -2.39 -0.02 0.63 16 38 H 0.15 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.17 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.16 1.74 8.10 -2.38 -0.02 1.72 16 41 H 0.15 1.60 7.55 -2.38 -0.02 1.58 16 Total: -1.00 -81.44 351.12 -3.54 -84.99 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.03 Total: 26.90 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: 3.45 Total: -36.42 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -2.11 Total: -65.59 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -6.60 Total: -89.28 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 37.04 SS G_CDS: -0.34 Total: 36.70 kcal Total: -81.44 -3.54 -84.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362559794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.602 kcal (2) G-P(sol) polarization free energy of solvation -81.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds