Wall clock time and date at job start Tue Mar 31 2020 22:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99882 * 3 2 1 7 7 C 1.40273 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 170.76064 * 7 2 1 9 9 C 1.40886 * 120.00269 * 350.76747 * 7 2 1 10 10 C 1.40714 * 120.32561 * 325.81783 * 9 7 2 11 11 C 1.37598 * 119.88035 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57332 * 0.02562 * 11 10 9 13 13 C 1.38225 * 120.67244 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09645 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.28404 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00024 * 174.16561 * 15 14 13 17 17 N 1.34778 * 119.99717 * 354.16023 * 15 14 13 18 18 C 1.46501 * 119.99494 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 15 20 20 O 1.42904 * 108.89836 * 66.31333 * 19 18 17 21 21 C 1.52970 * 108.93151 * 307.76248 * 19 18 17 22 22 C 1.55090 * 108.66788 * 209.33330 * 21 19 18 23 23 S 1.83845 * 101.19003 * 41.87207 * 22 21 19 24 24 O 1.42095 * 109.61495 * 211.05445 * 23 22 21 25 25 O 1.42100 * 109.77861 * 77.13684 * 23 22 21 26 26 C 1.53617 * 108.93310 * 184.99682 * 19 18 17 27 27 H 0.96998 * 120.00362 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05504 * 0.04920 * 10 9 7 29 29 H 1.08000 * 119.71058 * 180.28436 * 11 10 9 30 30 H 1.07993 * 119.66212 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.95168 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99975 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46933 * 299.99554 * 18 17 15 34 34 H 1.08997 * 109.47291 * 59.99880 * 18 17 15 35 35 H 0.96703 * 114.00269 * 300.70659 * 20 19 18 36 36 H 1.09000 * 109.65659 * 329.17512 * 21 19 18 37 37 H 1.09002 * 109.65600 * 89.49303 * 21 19 18 38 38 H 1.09000 * 111.08204 * 283.89589 * 22 21 19 39 39 H 1.09002 * 111.11654 * 159.86451 * 22 21 19 40 40 H 1.08993 * 110.26929 * 242.06959 * 26 19 18 41 41 H 1.09002 * 110.26977 * 4.04521 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3169 -2.4269 0.1968 10 6 0.1989 -2.4775 1.0497 11 6 -0.4686 -3.6664 1.2352 12 6 -0.0487 -4.8204 0.5879 13 6 1.0466 -4.7972 -0.2550 14 6 1.7426 -3.6095 -0.4629 15 6 2.9110 -3.5800 -1.3615 16 8 3.4505 -2.5219 -1.6230 17 7 3.3814 -4.7257 -1.8931 18 6 4.5428 -4.6963 -2.7856 19 6 4.8687 -6.1188 -3.2455 20 8 3.7998 -6.5966 -4.0648 21 6 4.9904 -7.0219 -2.0169 22 6 5.9866 -8.1662 -2.3387 23 16 7.3030 -7.2508 -3.2381 24 8 7.9061 -8.1052 -4.2000 25 8 8.1115 -6.5380 -2.3122 26 6 6.1598 -6.0902 -4.0773 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1349 -1.5847 1.5575 29 1 -1.3292 -3.7011 1.8869 30 1 -0.5832 -5.7456 0.7444 31 1 1.3630 -5.7019 -0.7531 32 1 2.9509 -5.5696 -1.6848 33 1 4.3186 -4.0760 -3.6533 34 1 5.3992 -4.2816 -2.2539 35 1 2.9413 -6.6150 -3.6202 36 1 5.3591 -6.4421 -1.1707 37 1 4.0150 -7.4429 -1.7731 38 1 5.5257 -8.9190 -2.9782 39 1 6.3761 -8.6162 -1.4255 40 1 5.9609 -6.4258 -5.0950 41 1 6.5805 -5.0847 -4.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362559824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:39 Heat of formation + Delta-G solvation = -128.438693 kcal Electronic energy + Delta-G solvation = -27354.836078 eV Core-core repulsion = 23326.983798 eV Total energy + Delta-G solvation = -4027.852280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93817 -38.52138 -37.35953 -36.76911 -36.32602 -34.22017 -33.90439 -33.32507 -30.80125 -30.03628 -29.61719 -26.99554 -25.40544 -24.45415 -22.31534 -21.15403 -20.74893 -19.68598 -19.17563 -17.90090 -17.50795 -17.05159 -16.77393 -16.08242 -15.90111 -15.45384 -15.25057 -14.99043 -14.68522 -14.33626 -14.25639 -13.94820 -13.39316 -13.28427 -13.15264 -13.00456 -12.79193 -12.64158 -12.45014 -12.34332 -12.22664 -12.05229 -11.63885 -11.48764 -11.27236 -11.19051 -11.07652 -10.76587 -10.67923 -10.60342 -10.36082 -10.15874 -9.76138 -9.35092 -8.64887 -8.53475 -7.69100 -7.45304 -6.87613 -4.47197 -0.31535 2.08555 2.25155 2.72387 3.06958 3.14426 3.15468 3.16972 3.49458 3.59300 3.85389 3.92554 3.98204 4.00320 4.06164 4.28210 4.49509 4.54272 4.60632 4.92986 5.05978 5.26091 5.37797 5.46214 5.50656 5.62133 5.73095 5.84248 6.05477 6.19516 6.49809 6.83632 6.86025 7.03076 7.13377 7.19466 7.36550 7.51550 7.77550 7.87918 8.08025 8.18165 8.57838 8.73646 8.80636 9.24326 10.07529 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.003057 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.867482 B = 9156.685386 C =10270.179247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.415 4.415 8 H 0.106 0.894 9 C 0.146 3.854 10 C -0.146 4.146 11 C -0.095 4.095 12 C -0.245 4.245 13 C -0.057 4.057 14 C -0.264 4.264 15 C 0.566 3.434 16 O -0.532 6.532 17 N -0.753 5.753 18 C 0.097 3.903 19 C 0.138 3.862 20 O -0.549 6.549 21 C -0.158 4.158 22 C -0.572 4.572 23 S 2.386 3.614 24 O -0.936 6.936 25 O -0.926 6.926 26 C -0.578 4.578 27 H 0.283 0.717 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.389 0.611 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.384 0.616 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -12.988 -4.162 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.443 4.443 8 H 0.124 0.876 9 C 0.142 3.858 10 C -0.165 4.165 11 C -0.114 4.114 12 C -0.264 4.264 13 C -0.076 4.076 14 C -0.269 4.269 15 C 0.360 3.640 16 O -0.409 6.409 17 N -0.410 5.410 18 C -0.028 4.028 19 C 0.096 3.904 20 O -0.357 6.357 21 C -0.196 4.196 22 C -0.702 4.702 23 S 2.568 3.432 24 O -0.933 6.933 25 O -0.923 6.923 26 C -0.706 4.706 27 H 0.093 0.907 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.224 0.776 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.271 -12.166 -4.843 15.488 hybrid contribution -1.496 0.412 0.392 1.601 sum 6.775 -11.755 -4.451 14.279 Atomic orbital electron populations 1.69712 1.07801 1.29643 1.34399 1.26136 0.94803 1.01881 0.92128 0.86103 0.81312 0.80103 0.78389 1.17983 1.19855 1.19821 1.20228 0.97426 0.89478 1.37150 0.87634 1.17476 0.89968 0.91316 0.87081 1.21378 0.98462 0.96385 1.00296 1.20808 0.98229 0.93563 0.98837 1.20276 1.01849 0.97385 1.06933 1.20586 0.95281 0.94921 0.96844 1.19382 1.02702 0.96267 1.08596 1.18440 0.83774 0.82241 0.79522 1.90700 1.59698 1.29478 1.61054 1.46049 1.32950 1.10440 1.51585 1.22036 0.90875 0.94577 0.95336 1.21306 0.87424 0.93465 0.88221 1.86580 1.19191 1.87634 1.42268 1.22900 1.02645 0.94899 0.99194 1.30502 1.15850 1.09221 1.14609 1.09283 0.78220 0.78300 0.77348 1.93618 1.74454 1.64716 1.60562 1.93667 1.64410 1.72084 1.62128 1.30494 1.09051 1.18256 1.12846 0.90657 0.86443 0.89038 0.89089 0.89528 0.77645 0.90196 0.90361 0.76636 0.87628 0.87534 0.84131 0.84253 0.82665 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 11.14 55.56 0.62 -19.32 16 2 C 0.07 1.73 5.25 -17.30 -0.09 1.64 16 3 Si 0.92 19.18 29.57 -169.99 -5.03 14.15 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.41 -11.01 7.68 -37.82 -0.29 -11.30 16 8 H 0.11 2.91 5.92 -52.48 -0.31 2.60 16 9 C 0.15 3.74 5.51 -106.54 -0.59 3.15 16 10 C -0.15 -3.56 8.62 -38.88 -0.34 -3.89 16 11 C -0.10 -2.05 10.01 -39.60 -0.40 -2.44 16 12 C -0.25 -4.85 10.03 -39.37 -0.39 -5.24 16 13 C -0.06 -1.11 9.52 -39.22 -0.37 -1.49 16 14 C -0.26 -6.01 5.92 -104.37 -0.62 -6.63 16 15 C 0.57 11.98 7.72 -12.51 -0.10 11.88 16 16 O -0.53 -13.19 13.59 5.27 0.07 -13.12 16 17 N -0.75 -11.14 4.95 -61.38 -0.30 -11.44 16 18 C 0.10 1.23 4.33 -4.04 -0.02 1.21 16 19 C 0.14 1.24 1.01 -90.31 -0.09 1.15 16 20 O -0.55 -4.98 12.76 -35.23 -0.45 -5.43 16 21 C -0.16 -1.15 4.55 -25.64 -0.12 -1.26 16 22 C -0.57 -3.39 7.46 38.26 0.29 -3.10 16 23 S 2.39 20.04 6.05 -107.50 -0.65 19.39 16 24 O -0.94 -10.85 18.16 -57.69 -1.05 -11.89 16 25 O -0.93 -11.14 18.16 -57.69 -1.05 -12.18 16 26 C -0.58 -4.50 6.72 37.48 0.25 -4.25 16 27 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 28 H 0.12 2.94 6.59 -52.49 -0.35 2.59 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.09 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.09 1.29 6.44 -52.48 -0.34 0.95 16 32 H 0.39 4.52 4.89 -40.82 -0.20 4.32 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 35 H 0.38 2.69 8.06 45.56 0.37 3.06 16 36 H 0.11 0.83 7.84 -51.93 -0.41 0.42 16 37 H 0.11 0.61 7.44 -51.93 -0.39 0.22 16 38 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.16 1.06 7.92 -51.93 -0.41 0.65 16 41 H 0.15 1.03 7.63 -51.93 -0.40 0.63 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -35.32 349.72 -9.53 -44.85 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.10 Total: 10.31 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.87 Total: -20.57 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.31 Total: -30.76 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.47 Total: -42.63 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 20.04 SS G_CDS: -0.65 Total: 19.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.32 -9.53 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362559824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.584 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds