Wall clock time and date at job start Tue Mar 31 2020 22:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47000 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47143 * 299.99814 * 3 2 1 6 6 H 1.48502 * 109.46930 * 59.99882 * 3 2 1 7 7 C 1.40273 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 170.76064 * 7 2 1 9 9 C 1.40886 * 120.00269 * 350.76747 * 7 2 1 10 10 C 1.40714 * 120.32561 * 325.81783 * 9 7 2 11 11 C 1.37598 * 119.88035 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57332 * 0.02562 * 11 10 9 13 13 C 1.38225 * 120.67244 * 359.97438 * 12 11 10 14 14 C 1.39224 * 120.09645 * 0.02562 * 13 12 11 15 15 C 1.47435 * 120.28404 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00024 * 174.16561 * 15 14 13 17 17 N 1.34778 * 119.99717 * 354.16023 * 15 14 13 18 18 C 1.46501 * 119.99494 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46988 * 179.97438 * 18 17 15 20 20 O 1.42904 * 108.89836 * 66.31333 * 19 18 17 21 21 C 1.52970 * 108.93151 * 307.76248 * 19 18 17 22 22 C 1.55090 * 108.66788 * 209.33330 * 21 19 18 23 23 S 1.83845 * 101.19003 * 41.87207 * 22 21 19 24 24 O 1.42095 * 109.61495 * 211.05445 * 23 22 21 25 25 O 1.42100 * 109.77861 * 77.13684 * 23 22 21 26 26 C 1.53617 * 108.93310 * 184.99682 * 19 18 17 27 27 H 0.96998 * 120.00362 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05504 * 0.04920 * 10 9 7 29 29 H 1.08000 * 119.71058 * 180.28436 * 11 10 9 30 30 H 1.07993 * 119.66212 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.95168 * 180.02562 * 13 12 11 32 32 H 0.97000 * 119.99975 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46933 * 299.99554 * 18 17 15 34 34 H 1.08997 * 109.47291 * 59.99880 * 18 17 15 35 35 H 0.96703 * 114.00269 * 300.70659 * 20 19 18 36 36 H 1.09000 * 109.65659 * 329.17512 * 21 19 18 37 37 H 1.09002 * 109.65600 * 89.49303 * 21 19 18 38 38 H 1.09000 * 111.08204 * 283.89589 * 22 21 19 39 39 H 1.09002 * 111.11654 * 159.86451 * 22 21 19 40 40 H 1.08993 * 110.26929 * 242.06959 * 26 19 18 41 41 H 1.09002 * 110.26977 * 4.04521 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3169 -2.4269 0.1968 10 6 0.1989 -2.4775 1.0497 11 6 -0.4686 -3.6664 1.2352 12 6 -0.0487 -4.8204 0.5879 13 6 1.0466 -4.7972 -0.2550 14 6 1.7426 -3.6095 -0.4629 15 6 2.9110 -3.5800 -1.3615 16 8 3.4505 -2.5219 -1.6230 17 7 3.3814 -4.7257 -1.8931 18 6 4.5428 -4.6963 -2.7856 19 6 4.8687 -6.1188 -3.2455 20 8 3.7998 -6.5966 -4.0648 21 6 4.9904 -7.0219 -2.0169 22 6 5.9866 -8.1662 -2.3387 23 16 7.3030 -7.2508 -3.2381 24 8 7.9061 -8.1052 -4.2000 25 8 8.1115 -6.5380 -2.3122 26 6 6.1598 -6.0902 -4.0773 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1349 -1.5847 1.5575 29 1 -1.3292 -3.7011 1.8869 30 1 -0.5832 -5.7456 0.7444 31 1 1.3630 -5.7019 -0.7531 32 1 2.9509 -5.5696 -1.6848 33 1 4.3186 -4.0760 -3.6533 34 1 5.3992 -4.2816 -2.2539 35 1 2.9413 -6.6150 -3.6202 36 1 5.3591 -6.4421 -1.1707 37 1 4.0150 -7.4429 -1.7731 38 1 5.5257 -8.9190 -2.9782 39 1 6.3761 -8.6162 -1.4255 40 1 5.9609 -6.4258 -5.0950 41 1 6.5805 -5.0847 -4.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362559824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:38 Heat of formation + Delta-G solvation = -157.837707 kcal Electronic energy + Delta-G solvation = -27356.110914 eV Core-core repulsion = 23326.983798 eV Total energy + Delta-G solvation = -4029.127117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10411 -39.82270 -38.41180 -38.14114 -37.11416 -35.73359 -35.07056 -34.47001 -31.97036 -31.56612 -30.98968 -28.15218 -27.03877 -25.23334 -23.87296 -22.70130 -21.70698 -21.18808 -19.91034 -19.46784 -18.50911 -18.13408 -17.67677 -17.12463 -16.95138 -16.79234 -16.50229 -16.14992 -15.94914 -15.60579 -15.38251 -15.13278 -14.91133 -14.49531 -14.33689 -14.15131 -13.81824 -13.63918 -13.46509 -13.30911 -13.24351 -13.14889 -12.93891 -12.86618 -12.75253 -12.48419 -12.31641 -12.21025 -11.95500 -11.88311 -11.47795 -11.30711 -11.14759 -11.11158 -10.29112 -10.03543 -9.37675 -9.21171 -8.67471 -6.35598 -0.96562 0.53284 1.02599 1.33406 1.46614 1.47425 1.48927 2.20587 2.29785 2.35529 2.55421 2.79401 2.85290 3.20038 3.30177 3.35602 3.52817 3.74022 3.80839 4.00884 4.30285 4.36862 4.39522 4.49898 4.59134 4.61216 4.68231 4.78648 4.87252 4.92088 4.99375 5.11399 5.25479 5.35768 5.55606 5.63998 5.83831 6.06602 6.13216 6.36117 6.60434 6.64725 6.79062 6.93310 7.00957 7.64930 8.29952 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.003057 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.867482 B = 9156.685386 C =10270.179247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.114 3.886 10 C -0.179 4.179 11 C -0.093 4.093 12 C -0.235 4.235 13 C -0.051 4.051 14 C -0.279 4.279 15 C 0.561 3.439 16 O -0.578 6.578 17 N -0.725 5.725 18 C 0.092 3.908 19 C 0.150 3.850 20 O -0.553 6.553 21 C -0.166 4.166 22 C -0.543 4.543 23 S 2.391 3.609 24 O -0.972 6.972 25 O -0.970 6.970 26 C -0.578 4.578 27 H 0.288 0.712 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.536 -16.541 -4.286 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.111 3.889 10 C -0.199 4.199 11 C -0.112 4.112 12 C -0.254 4.254 13 C -0.069 4.069 14 C -0.284 4.284 15 C 0.354 3.646 16 O -0.458 6.458 17 N -0.381 5.381 18 C -0.033 4.033 19 C 0.107 3.893 20 O -0.362 6.362 21 C -0.205 4.205 22 C -0.676 4.676 23 S 2.578 3.422 24 O -0.970 6.970 25 O -0.967 6.967 26 C -0.707 4.707 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.184 0.816 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.249 -15.774 -4.978 18.060 hybrid contribution -1.252 1.242 0.406 1.810 sum 5.997 -14.532 -4.573 16.372 Atomic orbital electron populations 1.69739 1.08556 1.30464 1.36261 1.26745 0.95568 1.04240 0.91691 0.85255 0.79139 0.76818 0.79074 1.19393 1.19303 1.17993 1.20159 0.96586 0.91264 1.40723 0.90084 1.17858 0.90877 0.92344 0.87844 1.21294 0.99729 0.97203 1.01643 1.21192 0.98267 0.93096 0.98619 1.20829 1.01370 0.98171 1.05002 1.21089 0.94204 0.95468 0.96139 1.19800 1.03473 0.96797 1.08337 1.18441 0.83475 0.83133 0.79533 1.90684 1.60939 1.31735 1.62488 1.45628 1.32847 1.09393 1.50268 1.22208 0.89512 0.97438 0.94117 1.21177 0.87779 0.91198 0.89117 1.86592 1.19755 1.87222 1.42605 1.23006 1.04599 0.95025 0.97853 1.30381 1.13152 1.08728 1.15304 1.08936 0.78692 0.77915 0.76649 1.93568 1.76158 1.65362 1.61870 1.93610 1.66790 1.73285 1.63003 1.30476 1.08345 1.18513 1.13368 0.90124 0.88572 0.86532 0.84739 0.84050 0.75320 0.91777 0.91152 0.75412 0.88123 0.84579 0.81613 0.81958 0.81450 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.59 11.14 21.88 0.24 -43.34 16 2 C 0.03 1.70 5.25 85.37 0.45 2.14 16 3 Si 0.98 41.47 29.57 68.60 2.03 43.50 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.46 -25.86 7.68 23.41 0.18 -25.68 16 8 H 0.08 4.83 5.92 -2.91 -0.02 4.81 16 9 C 0.11 6.06 5.51 -21.11 -0.12 5.95 16 10 C -0.18 -8.93 8.62 22.72 0.20 -8.74 16 11 C -0.09 -3.81 10.01 22.26 0.22 -3.59 16 12 C -0.23 -8.22 10.03 22.41 0.22 -8.00 16 13 C -0.05 -1.75 9.52 22.50 0.21 -1.54 16 14 C -0.28 -12.51 5.92 -19.70 -0.12 -12.62 16 15 C 0.56 23.70 7.72 86.67 0.67 24.37 16 16 O -0.58 -29.90 13.59 -4.05 -0.06 -29.96 16 17 N -0.72 -19.85 4.95 -466.35 -2.31 -22.16 16 18 C 0.09 2.22 4.33 86.38 0.37 2.60 16 19 C 0.15 2.26 1.01 -10.59 -0.01 2.25 16 20 O -0.55 -7.86 12.76 -148.98 -1.90 -9.76 16 21 C -0.17 -1.71 4.55 31.30 0.14 -1.57 16 22 C -0.54 -4.10 7.46 72.70 0.54 -3.56 16 23 S 2.39 36.81 6.05 -56.49 -0.34 36.47 16 24 O -0.97 -21.61 18.16 -127.50 -2.32 -23.93 16 25 O -0.97 -23.14 18.16 -127.50 -2.32 -25.45 16 26 C -0.58 -8.07 6.72 72.19 0.48 -7.59 16 27 H 0.29 13.77 8.29 -92.71 -0.77 13.01 16 28 H 0.10 5.09 6.59 -2.91 -0.02 5.07 16 29 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.14 3.26 6.44 -2.91 -0.02 3.24 16 32 H 0.41 7.66 4.89 -92.71 -0.45 7.20 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 35 H 0.39 3.61 8.06 -74.06 -0.60 3.01 16 36 H 0.10 1.23 7.84 -2.39 -0.02 1.21 16 37 H 0.14 0.67 7.44 -2.39 -0.02 0.66 16 38 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.17 1.96 7.92 -2.39 -0.02 1.94 16 41 H 0.15 2.04 7.63 -2.39 -0.02 2.02 16 Total: -1.00 -82.87 349.72 -3.46 -86.34 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.05 Total: 23.87 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.45 Total: -35.57 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -2.07 Total: -65.51 kcal Atomic # 8 Polarization: -82.51 SS G_CDS: -6.59 Total: -89.10 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 36.81 SS G_CDS: -0.34 Total: 36.47 kcal Total: -82.87 -3.46 -86.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362559824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.501 kcal (2) G-P(sol) polarization free energy of solvation -82.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds