Wall clock time and date at job start Tue Mar 31 2020 22:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48509 * 109.47113 * 275.41999 * 3 2 1 5 5 H 1.48501 * 109.46876 * 35.41532 * 3 2 1 6 6 H 1.48488 * 109.47351 * 155.41993 * 3 2 1 7 7 C 1.39936 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00006 * 341.71857 * 7 2 1 9 9 C 1.41439 * 120.00224 * 161.72202 * 7 2 1 10 10 C 1.40782 * 120.17757 * 330.19629 * 9 7 2 11 11 C 1.37716 * 120.04210 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.40953 * 359.95710 * 11 10 9 13 13 C 1.39879 * 120.35973 * 0.02562 * 12 11 10 14 14 C 1.47879 * 120.02567 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00106 * 180.02562 * 14 13 12 16 16 N 1.34784 * 120.00032 * 0.02562 * 14 13 12 17 17 C 1.46494 * 119.99883 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47192 * 180.02562 * 17 16 14 19 19 O 1.42904 * 109.63877 * 300.42873 * 18 17 16 20 20 C 1.53872 * 109.64807 * 60.72085 * 18 17 16 21 21 C 1.55043 * 106.62274 * 167.03752 * 20 18 17 22 22 S 1.83288 * 102.56864 * 317.56537 * 21 20 18 23 23 O 1.42100 * 109.35356 * 269.81521 * 22 21 20 24 24 O 1.42099 * 109.47472 * 136.65023 * 22 21 20 25 25 C 1.54162 * 109.64912 * 180.02562 * 18 17 16 26 26 C 1.39030 * 119.94998 * 0.28289 * 13 12 11 27 27 H 0.97011 * 120.00005 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.98058 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.79162 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.81843 * 179.97438 * 12 11 10 31 31 H 0.97000 * 119.99991 * 359.97438 * 16 14 13 32 32 H 1.08997 * 109.47776 * 59.99921 * 17 16 14 33 33 H 1.09000 * 109.47362 * 299.99712 * 17 16 14 34 34 H 0.96693 * 114.00412 * 59.29427 * 19 18 17 35 35 H 1.08998 * 110.03131 * 286.32915 * 20 18 17 36 36 H 1.09003 * 110.02969 * 47.74191 * 20 18 17 37 37 H 1.09007 * 110.78850 * 199.29823 * 21 20 18 38 38 H 1.08998 * 110.79206 * 75.84134 * 21 20 18 39 39 H 1.09008 * 110.31773 * 331.13637 * 25 18 17 40 40 H 1.09000 * 110.32283 * 93.23109 * 25 18 17 41 41 H 1.07996 * 120.20867 * 179.70180 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3753 2.1126 -1.3939 5 1 1.5017 2.6169 0.8114 6 1 3.5923 1.4098 0.5823 7 6 2.0079 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2924 9 6 3.3687 -1.2427 -0.3847 10 6 3.8623 -0.3099 -1.3165 11 6 5.1878 -0.3428 -1.6890 12 6 6.0430 -1.2888 -1.1520 13 6 5.5707 -2.2234 -0.2246 14 6 6.4912 -3.2308 0.3450 15 8 6.0803 -4.0430 1.1505 16 7 7.7860 -3.2484 -0.0289 17 6 8.6978 -4.2468 0.5349 18 6 10.0972 -4.0481 -0.0510 19 8 10.0471 -4.1884 -1.4722 20 6 10.6146 -2.6445 0.3096 21 6 12.1303 -2.6333 -0.0166 22 16 12.6861 -4.2620 0.6140 23 8 13.0862 -4.1300 1.9711 24 8 13.5658 -4.8597 -0.3283 25 6 11.0601 -5.0973 0.5394 26 6 4.2339 -2.2079 0.1572 27 1 -0.4851 0.8401 0.0004 28 1 3.2011 0.4320 -1.7395 29 1 5.5620 0.3745 -2.4044 30 1 7.0806 -1.3061 -1.4512 31 1 8.1139 -2.6005 -0.6720 32 1 8.3392 -5.2463 0.2892 33 1 8.7382 -4.1313 1.6181 34 1 9.4552 -3.5608 -1.9089 35 1 10.0988 -1.8919 -0.2868 36 1 10.4596 -2.4508 1.3710 37 1 12.6333 -1.8223 0.5102 38 1 12.2942 -2.5580 -1.0915 39 1 10.7373 -5.3871 1.5394 40 1 11.1111 -5.9717 -0.1094 41 1 3.8637 -2.9306 0.8692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362697316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:35 Heat of formation + Delta-G solvation = -164.188834 kcal Electronic energy + Delta-G solvation = -26746.426299 eV Core-core repulsion = 22717.023776 eV Total energy + Delta-G solvation = -4029.402522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30384 -39.91700 -38.89229 -38.10694 -37.08544 -35.65687 -35.31660 -34.56984 -32.57226 -31.80470 -31.19126 -28.27942 -26.97103 -25.23577 -24.33372 -22.46594 -21.86956 -21.63333 -19.91090 -19.78628 -18.51274 -18.09898 -17.75817 -17.46233 -17.02880 -16.73306 -16.60214 -16.42294 -16.32281 -15.57790 -15.47212 -15.30805 -14.98057 -14.55901 -14.49846 -14.42899 -13.97864 -13.84003 -13.75844 -13.35307 -13.27103 -13.21289 -13.10721 -12.84703 -12.81233 -12.66820 -12.32788 -12.29534 -11.98970 -11.75482 -11.56441 -11.30970 -11.22447 -11.13474 -10.84111 -10.26680 -9.61127 -9.54886 -8.91164 -6.55211 -0.93803 0.18598 0.76111 1.25938 1.42739 1.49124 1.53916 1.94926 2.06042 2.12345 2.53899 2.66044 2.89133 3.12421 3.27605 3.36690 3.46808 3.54343 3.76601 3.90302 4.02292 4.28371 4.34582 4.42624 4.52637 4.56040 4.60307 4.68550 4.78935 4.89517 4.92501 4.93092 4.95067 5.16579 5.28293 5.43323 5.65161 5.72589 5.86206 6.11392 6.31043 6.49770 6.60071 6.66937 6.74591 7.19973 8.17985 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.002313 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.305934 B =12102.237116 C =12420.308510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.970 3.030 4 H -0.246 1.246 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.491 4.491 8 H 0.047 0.953 9 C 0.064 3.936 10 C -0.226 4.226 11 C -0.082 4.082 12 C -0.178 4.178 13 C -0.113 4.113 14 C 0.566 3.434 15 O -0.583 6.583 16 N -0.708 5.708 17 C 0.097 3.903 18 C 0.142 3.858 19 O -0.555 6.555 20 C -0.158 4.158 21 C -0.556 4.556 22 S 2.394 3.606 23 O -0.975 6.975 24 O -0.980 6.980 25 C -0.581 4.581 26 C -0.169 4.169 27 H 0.295 0.705 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.415 0.585 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.399 0.601 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.426 0.440 -3.730 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.172 4.172 3 Si 0.792 3.208 4 H -0.171 1.171 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.062 3.938 10 C -0.245 4.245 11 C -0.100 4.100 12 C -0.197 4.197 13 C -0.116 4.116 14 C 0.355 3.645 15 O -0.464 6.464 16 N -0.363 5.363 17 C -0.028 4.028 18 C 0.100 3.900 19 O -0.364 6.364 20 C -0.196 4.196 21 C -0.688 4.688 22 S 2.582 3.418 23 O -0.972 6.972 24 O -0.977 6.977 25 C -0.711 4.711 26 C -0.189 4.189 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.250 0.750 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 25.239 -0.909 -2.731 25.402 hybrid contribution -1.910 0.903 -0.210 2.123 sum 23.329 -0.007 -2.941 23.514 Atomic orbital electron populations 1.69734 1.09451 1.31635 1.36948 1.26957 0.95436 1.04564 0.90244 0.85427 0.79641 0.75709 0.80009 1.17114 1.20739 1.17103 1.19479 0.94742 0.95620 1.42174 0.93475 1.17772 0.92406 0.92466 0.91152 1.21410 0.97709 1.03366 1.02050 1.21076 0.92141 0.98163 0.98620 1.21042 1.00576 0.97399 1.00695 1.19670 0.93154 0.98008 1.00792 1.18525 0.82607 0.83109 0.80211 1.90721 1.77664 1.41889 1.36100 1.45554 1.07893 1.35764 1.47119 1.22123 0.87992 0.92943 0.99738 1.21507 0.92750 0.93050 0.82722 1.86598 1.69974 1.62990 1.16846 1.23150 0.92915 0.96921 1.06636 1.30421 1.04837 1.19093 1.14490 1.08712 0.77924 0.80770 0.74352 1.93588 1.81591 1.86526 1.35499 1.93565 1.63249 1.76750 1.64106 1.30573 1.18182 1.10454 1.11852 1.21193 0.93131 1.02129 1.02470 0.89501 0.87846 0.83317 0.82384 0.74518 0.90964 0.89514 0.74965 0.85122 0.86828 0.82053 0.82277 0.81454 0.82346 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.36 13.93 21.82 0.30 -46.05 16 2 C 0.04 2.21 5.40 85.25 0.46 2.67 16 3 Si 0.97 40.14 24.52 68.60 1.68 41.82 16 4 H -0.25 -9.20 6.71 99.48 0.67 -8.53 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.25 -10.22 6.86 99.48 0.68 -9.54 16 7 C -0.49 -27.51 9.57 23.47 0.22 -27.28 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 9 C 0.06 3.17 5.10 -21.32 -0.11 3.06 16 10 C -0.23 -9.41 7.17 22.77 0.16 -9.25 16 11 C -0.08 -2.58 10.01 22.18 0.22 -2.35 16 12 C -0.18 -4.92 9.55 22.70 0.22 -4.70 16 13 C -0.11 -4.07 5.87 -20.14 -0.12 -4.19 16 14 C 0.57 18.03 7.77 86.80 0.67 18.71 16 15 O -0.58 -23.85 16.33 -3.86 -0.06 -23.91 16 16 N -0.71 -12.79 5.04 -465.94 -2.35 -15.14 16 17 C 0.10 1.47 4.67 86.38 0.40 1.87 16 18 C 0.14 1.27 0.83 -10.11 -0.01 1.26 16 19 O -0.55 -5.08 12.84 -148.98 -1.91 -6.99 16 20 C -0.16 -0.71 5.08 31.59 0.16 -0.55 16 21 C -0.56 -2.51 7.20 72.68 0.52 -1.99 16 22 S 2.39 29.41 6.10 -56.49 -0.34 29.07 16 23 O -0.97 -19.20 18.15 -127.47 -2.31 -21.51 16 24 O -0.98 -20.56 18.15 -127.47 -2.31 -22.87 16 25 C -0.58 -5.31 6.46 72.38 0.47 -4.84 16 26 C -0.17 -7.86 9.34 23.01 0.21 -7.64 16 27 H 0.29 14.28 8.30 -92.70 -0.77 13.51 16 28 H 0.10 4.29 4.72 -2.91 -0.01 4.28 16 29 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.16 2.37 6.38 -2.91 -0.02 2.35 16 31 H 0.42 4.10 4.65 -92.71 -0.43 3.67 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.40 1.22 7.84 -74.06 -0.58 0.64 16 35 H 0.13 0.02 7.39 -2.39 -0.02 0.00 16 36 H 0.11 0.41 8.11 -2.39 -0.02 0.39 16 37 H 0.16 0.20 8.14 -2.38 -0.02 0.18 16 38 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.17 1.03 7.88 -2.38 -0.02 1.01 16 40 H 0.16 1.41 8.08 -2.39 -0.02 1.40 16 41 H 0.09 4.39 7.64 -2.91 -0.02 4.37 16 Total: -1.00 -84.50 349.40 -3.79 -88.29 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.02 Total: 12.53 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.50 Total: -35.23 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -2.04 Total: -61.19 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -6.60 Total: -75.29 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.68 Total: 41.82 kcal Atomic # 16 Polarization: 29.41 SS G_CDS: -0.34 Total: 29.07 kcal Total: -84.50 -3.79 -88.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362697316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.901 kcal (2) G-P(sol) polarization free energy of solvation -84.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds