Wall clock time and date at job start Tue Mar 31 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47373 * 270.00570 * 3 2 1 5 5 H 1.48506 * 109.47028 * 30.00336 * 3 2 1 6 6 H 1.48491 * 109.47197 * 150.00325 * 3 2 1 7 7 C 1.39939 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99334 * 197.86995 * 7 2 1 9 9 C 1.41434 * 120.00337 * 17.87650 * 7 2 1 10 10 C 1.40782 * 120.17444 * 204.47727 * 9 7 2 11 11 C 1.37713 * 120.04001 * 179.97438 * 10 9 7 12 12 C 1.38372 * 120.41055 * 359.72400 * 11 10 9 13 13 C 1.39885 * 120.35676 * 0.55398 * 12 11 10 14 14 C 1.47882 * 120.02302 * 179.71671 * 13 12 11 15 15 O 1.21548 * 119.99892 * 179.72739 * 14 13 12 16 16 N 1.34774 * 120.00119 * 359.45401 * 14 13 12 17 17 C 1.46504 * 119.99943 * 180.27652 * 16 14 13 18 18 C 1.52999 * 109.47132 * 179.97438 * 17 16 14 19 19 O 1.42897 * 109.64257 * 300.42806 * 18 17 16 20 20 C 1.53875 * 109.64543 * 179.97438 * 18 17 16 21 21 C 1.55057 * 106.62259 * 192.96769 * 20 18 17 22 22 S 1.83282 * 102.56691 * 42.43275 * 21 20 18 23 23 O 1.42097 * 109.35307 * 90.18603 * 22 21 20 24 24 O 1.42100 * 109.35472 * 223.25549 * 22 21 20 25 25 C 1.54167 * 109.64459 * 60.72342 * 18 17 16 26 26 C 1.39031 * 119.94629 * 359.44923 * 13 12 11 27 27 H 0.96999 * 120.00430 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.98237 * 359.95208 * 10 9 7 29 29 H 1.07999 * 119.79646 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.82209 * 180.27328 * 12 11 10 31 31 H 0.97002 * 120.00367 * 0.27581 * 16 14 13 32 32 H 1.09001 * 109.46826 * 299.99473 * 17 16 14 33 33 H 1.08998 * 109.47140 * 59.99930 * 17 16 14 34 34 H 0.96697 * 114.00249 * 59.29841 * 19 18 17 35 35 H 1.08995 * 110.03246 * 312.25510 * 20 18 17 36 36 H 1.09002 * 110.02655 * 73.62814 * 20 18 17 37 37 H 1.09001 * 110.79013 * 160.70331 * 21 20 18 38 38 H 1.09003 * 110.78547 * 283.97369 * 21 20 18 39 39 H 1.09000 * 110.31858 * 266.66198 * 25 18 17 40 40 H 1.08994 * 110.32168 * 28.86046 * 25 18 17 41 41 H 1.08006 * 120.19892 * 180.25678 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4401 0.6999 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2865 9 6 1.3519 -2.4071 -0.3771 10 6 1.8258 -3.6499 0.0842 11 6 1.1847 -4.8118 -0.2837 12 6 0.0699 -4.7677 -1.1022 13 6 -0.4119 -3.5425 -1.5750 14 6 -1.6002 -3.5044 -2.4545 15 8 -2.0215 -2.4392 -2.8610 16 7 -2.2127 -4.6511 -2.8097 17 6 -3.3863 -4.6138 -3.6859 18 6 -3.8843 -6.0393 -3.9324 19 8 -2.8491 -6.8106 -4.5450 20 6 -5.1176 -6.0047 -4.8519 21 6 -5.7577 -7.4155 -4.7888 22 16 -5.6645 -7.8162 -3.0028 23 8 -6.8482 -7.3676 -2.3571 24 8 -5.2384 -9.1624 -2.8438 25 6 -4.2856 -6.6871 -2.5922 26 6 0.2239 -2.3603 -1.2129 27 1 -0.4851 0.8400 0.0004 28 1 2.6929 -3.6922 0.7267 29 1 1.5518 -5.7631 0.0721 30 1 -0.4282 -5.6844 -1.3812 31 1 -1.8766 -5.5013 -2.4853 32 1 -4.1752 -4.0298 -3.2118 33 1 -3.1155 -4.1545 -4.6365 34 1 -2.0396 -6.8703 -4.0195 35 1 -5.8269 -5.2569 -4.4973 36 1 -4.8149 -5.7766 -5.8739 37 1 -6.7941 -7.3855 -5.1250 38 1 -5.1816 -8.1284 -5.3788 39 1 -3.4482 -7.2481 -2.1773 40 1 -4.6176 -5.9247 -1.8876 41 1 -0.1472 -1.4118 -1.5722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362697320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:39 Heat of formation + Delta-G solvation = -165.268409 kcal Electronic energy + Delta-G solvation = -26942.569244 eV Core-core repulsion = 22913.119908 eV Total energy + Delta-G solvation = -4029.449336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21009 -39.81733 -38.70416 -38.11495 -37.09016 -35.70762 -35.25238 -34.73451 -32.20165 -31.29071 -30.71206 -28.51445 -27.16268 -25.36730 -23.64576 -22.78760 -21.80313 -21.31003 -19.93928 -19.63887 -18.71302 -18.02458 -17.51406 -17.15365 -16.97535 -16.81458 -16.49786 -16.33557 -16.23453 -15.63291 -15.48661 -15.01984 -14.91489 -14.83707 -14.37505 -14.26205 -14.01199 -13.56385 -13.50540 -13.36962 -13.17526 -13.07256 -12.96079 -12.82240 -12.56447 -12.54060 -12.36930 -12.19090 -12.07673 -11.90610 -11.52129 -11.45212 -11.09096 -11.08048 -10.81748 -10.23486 -9.48223 -9.38744 -8.67848 -6.38973 -0.94205 0.36762 1.00521 1.36170 1.47371 1.49960 1.56041 2.08441 2.09568 2.18460 2.57448 2.77229 2.88441 3.07807 3.21571 3.38167 3.60025 3.69553 3.77078 3.99068 4.04131 4.35757 4.42140 4.52821 4.56286 4.58284 4.65822 4.75458 4.90695 4.93862 4.99500 5.08353 5.18847 5.29986 5.35050 5.51470 5.84877 5.91610 6.04888 6.28394 6.44610 6.52320 6.64793 6.87587 6.93858 7.26350 8.28767 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022399 B = 0.002508 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.728806 B =11161.187276 C =11646.881094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.498 4.498 8 H 0.082 0.918 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.564 3.436 15 O -0.584 6.584 16 N -0.712 5.712 17 C 0.096 3.904 18 C 0.146 3.854 19 O -0.549 6.549 20 C -0.111 4.111 21 C -0.556 4.556 22 S 2.399 3.601 23 O -0.976 6.976 24 O -0.978 6.978 25 C -0.632 4.632 26 C -0.132 4.132 27 H 0.287 0.713 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.411 0.589 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.394 0.606 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -13.532 -9.586 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.064 3.936 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.216 4.216 13 C -0.143 4.143 14 C 0.354 3.646 15 O -0.465 6.465 16 N -0.367 5.367 17 C -0.029 4.029 18 C 0.103 3.897 19 O -0.358 6.358 20 C -0.150 4.150 21 C -0.689 4.689 22 S 2.587 3.413 23 O -0.974 6.974 24 O -0.975 6.975 25 C -0.762 4.762 26 C -0.152 4.152 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.250 0.750 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.182 0.818 40 H 0.174 0.826 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.868 -13.378 -9.723 19.789 hybrid contribution 1.409 1.333 0.546 2.015 sum -9.460 -12.045 -9.176 17.854 Atomic orbital electron populations 1.69877 1.09149 1.30597 1.35303 1.26821 0.95418 1.04860 0.91372 0.85208 0.79255 0.75934 0.79390 1.19072 1.19438 1.17533 1.19870 0.98577 0.92317 1.41974 0.89972 1.17941 0.91878 0.93841 0.89915 1.21415 1.03921 0.92909 1.05554 1.20936 0.95438 0.97604 0.97422 1.20867 1.00392 0.95177 1.05191 1.19771 0.97079 0.95459 1.01977 1.18641 0.83016 0.83541 0.79395 1.90695 1.67122 1.31785 1.56924 1.45566 1.31162 1.08657 1.51301 1.22120 0.88411 0.97086 0.95237 1.21676 0.90424 0.88617 0.88950 1.86569 1.26690 1.72810 1.49722 1.22337 0.93509 0.95490 1.03656 1.30445 1.11974 1.05916 1.20572 1.08587 0.76389 0.75538 0.80837 1.93582 1.45836 1.83221 1.74728 1.93562 1.83107 1.34404 1.86401 1.31370 1.20908 1.17140 1.06739 1.21450 0.98249 0.96590 0.98939 0.90294 0.87639 0.84398 0.84075 0.74996 0.90031 0.90325 0.75438 0.85797 0.85660 0.81755 0.82651 0.81758 0.82635 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.01 10.96 21.83 0.24 -44.77 16 2 C 0.03 1.56 5.14 85.25 0.44 2.00 16 3 Si 0.98 39.01 29.60 68.60 2.03 41.04 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.50 -26.64 9.05 23.47 0.21 -26.42 16 8 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 9 C 0.07 3.51 5.57 -21.32 -0.12 3.39 16 10 C -0.22 -9.82 9.78 22.77 0.22 -9.60 16 11 C -0.10 -3.55 10.01 22.18 0.22 -3.33 16 12 C -0.20 -6.94 9.55 22.70 0.22 -6.72 16 13 C -0.14 -6.10 5.87 -20.13 -0.12 -6.22 16 14 C 0.56 22.09 7.77 86.80 0.67 22.77 16 15 O -0.58 -27.95 16.33 -3.87 -0.06 -28.02 16 16 N -0.71 -17.58 5.04 -465.93 -2.35 -19.93 16 17 C 0.10 1.85 4.67 86.38 0.40 2.25 16 18 C 0.15 1.74 0.83 -10.10 -0.01 1.73 16 19 O -0.55 -6.60 12.86 -148.98 -1.92 -8.51 16 20 C -0.11 -0.87 5.49 31.59 0.17 -0.70 16 21 C -0.56 -3.95 7.20 72.69 0.52 -3.43 16 22 S 2.40 34.27 6.10 -56.49 -0.34 33.93 16 23 O -0.98 -21.59 18.14 -127.47 -2.31 -23.90 16 24 O -0.98 -21.73 18.15 -127.47 -2.31 -24.04 16 25 C -0.63 -7.16 5.78 72.38 0.42 -6.74 16 26 C -0.13 -7.02 8.24 23.01 0.19 -6.83 16 27 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 28 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.14 3.39 6.38 -2.91 -0.02 3.37 16 31 H 0.41 7.30 5.12 -92.71 -0.47 6.83 16 32 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.39 3.16 7.78 -74.06 -0.58 2.58 16 35 H 0.12 0.60 8.11 -2.39 -0.02 0.58 16 36 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.16 1.29 7.98 -2.39 -0.02 1.27 16 40 H 0.16 1.76 7.88 -2.39 -0.02 1.74 16 41 H 0.10 5.90 5.74 -2.91 -0.02 5.88 16 Total: -1.00 -82.86 355.45 -3.54 -86.40 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.04 Total: 25.65 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.45 Total: -37.84 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -2.11 Total: -64.70 kcal Atomic # 8 Polarization: -77.87 SS G_CDS: -6.60 Total: -84.47 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: 34.27 SS G_CDS: -0.34 Total: 33.93 kcal Total: -82.86 -3.54 -86.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362697320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.872 kcal (2) G-P(sol) polarization free energy of solvation -82.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds