Wall clock time and date at job start Tue Mar 31 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48503 * 109.47226 * 239.99901 * 3 2 1 5 5 H 1.48499 * 109.47166 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47126 * 120.00042 * 3 2 1 7 7 C 1.39942 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 163.66559 * 7 2 1 9 9 C 1.41395 * 119.99648 * 343.66067 * 7 2 1 10 10 C 1.40732 * 120.24518 * 334.05026 * 9 7 2 11 11 C 1.37606 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24814 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50175 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.24855 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12847 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47250 * 265.02397 * 15 14 13 17 17 O 1.21277 * 120.00221 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99838 * 179.97438 * 16 15 14 19 19 C 1.46489 * 119.99726 * 179.97438 * 18 16 15 20 20 H 1.08998 * 108.89631 * 34.30183 * 19 18 16 21 21 C 1.54205 * 108.92837 * 275.62774 * 19 18 16 22 22 S 1.83647 * 102.94812 * 214.14504 * 21 19 18 23 23 O 1.42097 * 109.89187 * 282.45328 * 22 21 19 24 24 O 1.42095 * 109.80932 * 148.06486 * 22 21 19 25 25 C 1.83824 * 94.17281 * 35.26783 * 22 21 19 26 26 C 1.52389 * 108.92578 * 152.96974 * 19 18 16 27 27 H 1.09003 * 108.92566 * 0.02562 * 26 19 18 28 28 O 1.42899 * 108.92503 * 241.34907 * 26 19 18 29 29 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.12957 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87327 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.74954 * 179.72296 * 12 11 10 33 33 H 1.08005 * 119.87510 * 180.02562 * 13 12 11 34 34 H 1.09004 * 109.47017 * 25.02217 * 15 14 13 35 35 H 1.08995 * 109.46928 * 145.02020 * 15 14 13 36 36 H 0.97003 * 119.99868 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.73619 * 332.55706 * 21 19 18 38 38 H 1.09000 * 110.73431 * 95.87190 * 21 19 18 39 39 H 1.09004 * 110.73405 * 206.45244 * 25 22 21 40 40 H 1.09001 * 110.89013 * 83.21429 * 25 22 21 41 41 H 0.96702 * 114.00047 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0553 -1.2307 -0.2636 9 6 1.3439 -2.4118 0.3434 10 6 0.2129 -2.3812 1.1804 11 6 -0.4252 -3.5553 1.5090 12 6 0.0424 -4.7652 1.0192 13 6 1.1554 -4.8072 0.1941 14 6 1.8095 -3.6454 -0.1477 15 6 3.0196 -3.6943 -1.0445 16 6 4.2685 -3.7245 -0.2017 17 8 4.1844 -3.7074 1.0080 18 7 5.4791 -3.7704 -0.7924 19 6 6.6932 -3.7991 0.0268 20 1 6.4913 -4.3630 0.9375 21 6 7.0742 -2.3541 0.4073 22 16 8.9098 -2.4048 0.4294 23 8 9.3621 -3.0233 1.6261 24 8 9.4312 -1.1432 0.0347 25 6 9.0277 -3.5925 -0.9687 26 6 7.7993 -4.4995 -0.7531 27 1 7.4093 -4.8027 -1.7248 28 8 8.2073 -5.6648 -0.0336 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1528 -1.4400 1.5633 31 1 -1.2935 -3.5342 2.1508 32 1 -0.4619 -5.6822 1.2858 33 1 1.5108 -5.7553 -0.1821 34 1 2.9772 -4.5906 -1.6634 35 1 3.0339 -2.8117 -1.6839 36 1 5.5465 -3.7844 -1.7600 37 1 6.7162 -1.6501 -0.3439 38 1 6.6851 -2.0993 1.3931 39 1 9.9498 -4.1706 -0.9073 40 1 8.9617 -3.0745 -1.9254 41 1 8.9107 -6.1680 -0.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363089643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:47 Heat of formation + Delta-G solvation = -126.655744 kcal Electronic energy + Delta-G solvation = -27474.632366 eV Core-core repulsion = 23446.857401 eV Total energy + Delta-G solvation = -4027.774965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89509 -38.39539 -37.32315 -37.18311 -36.25012 -35.07227 -33.64197 -32.32442 -31.47026 -29.60069 -29.42601 -27.00043 -25.54829 -24.83720 -21.54810 -20.95988 -20.74590 -19.44822 -19.30119 -17.87043 -17.40903 -17.12648 -16.70936 -16.34741 -16.00176 -15.57105 -15.30581 -15.06030 -14.72490 -14.47598 -14.41257 -13.71096 -13.54640 -13.31465 -13.18176 -12.92792 -12.59644 -12.39236 -12.36933 -12.25712 -11.78186 -11.71624 -11.58758 -11.39135 -11.23799 -11.11194 -11.01002 -10.86352 -10.70916 -10.43322 -10.39534 -9.50873 -9.41860 -9.29990 -9.17594 -9.05290 -7.33345 -7.31665 -6.75756 -4.37068 -0.26785 2.13159 2.74689 2.89168 3.04672 3.07083 3.08287 3.18018 3.26199 3.29269 3.56547 3.80160 3.91001 4.02379 4.18211 4.30973 4.64136 4.72129 4.80504 4.87299 5.04658 5.32712 5.62563 5.64634 5.75330 5.95592 6.07365 6.26196 6.37026 6.48744 6.49563 6.77323 7.06090 7.08783 7.27658 7.40381 7.59450 7.70238 7.90908 8.03980 8.11652 8.29081 8.61751 8.69476 8.88961 8.99417 10.18414 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003831 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.212348 B = 7307.123798 C = 8982.442971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.106 4.106 12 C -0.239 4.239 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.069 4.069 16 C 0.516 3.484 17 O -0.509 6.509 18 N -0.736 5.736 19 C 0.152 3.848 20 H 0.124 0.876 21 C -0.586 4.586 22 S 2.385 3.615 23 O -0.918 6.918 24 O -0.935 6.935 25 C -0.623 4.623 26 C 0.108 3.892 27 H 0.089 0.911 28 O -0.549 6.549 29 H 0.280 0.720 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.196 -5.912 -7.387 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.125 4.125 12 C -0.258 4.258 13 C -0.098 4.098 14 C -0.187 4.187 15 C -0.108 4.108 16 C 0.304 3.696 17 O -0.381 6.381 18 N -0.392 5.392 19 C 0.045 3.955 20 H 0.142 0.858 21 C -0.717 4.717 22 S 2.566 3.434 23 O -0.915 6.915 24 O -0.932 6.932 25 C -0.752 4.752 26 C 0.047 3.953 27 H 0.107 0.893 28 O -0.355 6.355 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 15.146 -5.073 -5.496 16.892 hybrid contribution 0.223 0.250 -1.441 1.480 sum 15.370 -4.823 -6.937 17.539 Atomic orbital electron populations 1.69804 1.07465 1.29211 1.35477 1.25869 0.94695 1.01092 0.92342 0.86481 0.80295 0.80667 0.79975 1.19052 1.20280 1.18840 1.19419 0.97115 0.90982 1.41266 0.90855 1.17325 0.90780 0.91228 0.87924 1.21297 0.99009 0.96675 1.00829 1.20689 0.98633 0.93477 0.99682 1.20311 1.01572 0.96172 1.07782 1.20300 0.95879 0.95512 0.98146 1.19023 0.99339 0.94085 1.06226 1.20267 0.90185 1.02963 0.97431 1.21405 0.84083 0.74428 0.89673 1.90703 1.86467 1.46256 1.14713 1.46274 1.04712 1.78830 1.09407 1.20637 0.85412 0.92055 0.97400 0.85790 1.30934 1.23819 1.04078 1.12917 1.09364 0.79691 0.76590 0.77747 1.93665 1.78754 1.77309 1.41809 1.93626 1.77153 1.38926 1.83491 1.31216 1.06252 1.17154 1.20576 1.21984 0.90504 0.86291 0.96543 0.89321 1.86670 1.59456 1.38220 1.51175 0.90867 0.86545 0.89565 0.89646 0.89755 0.90419 0.88357 0.76695 0.83582 0.83240 0.83871 0.83517 0.76538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.97 55.55 0.61 -19.53 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -11.66 8.14 -37.74 -0.31 -11.97 16 8 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 9 C 0.13 3.38 5.56 -106.82 -0.59 2.79 16 10 C -0.16 -4.19 8.69 -38.87 -0.34 -4.52 16 11 C -0.11 -2.57 10.02 -39.66 -0.40 -2.96 16 12 C -0.24 -5.49 10.05 -39.29 -0.39 -5.89 16 13 C -0.08 -1.80 9.66 -39.66 -0.38 -2.19 16 14 C -0.18 -4.29 4.43 -103.91 -0.46 -4.75 16 15 C -0.07 -1.24 5.18 -29.03 -0.15 -1.39 16 16 C 0.52 9.14 7.41 -10.98 -0.08 9.06 16 17 O -0.51 -11.45 15.67 5.56 0.09 -11.36 16 18 N -0.74 -8.90 4.93 -53.50 -0.26 -9.16 16 19 C 0.15 1.73 2.78 -67.62 -0.19 1.54 16 20 H 0.12 1.77 7.22 -51.93 -0.37 1.40 16 21 C -0.59 -6.35 6.99 37.79 0.26 -6.08 16 22 S 2.38 23.26 6.07 -107.50 -0.65 22.60 16 23 O -0.92 -12.42 18.17 -57.67 -1.05 -13.47 16 24 O -0.94 -11.99 18.16 -57.67 -1.05 -13.04 16 25 C -0.62 -3.34 7.08 37.79 0.27 -3.08 16 26 C 0.11 0.79 3.72 -26.41 -0.10 0.69 16 27 H 0.09 0.44 7.45 -51.93 -0.39 0.06 16 28 O -0.55 -4.59 13.07 -35.23 -0.46 -5.05 16 29 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 30 H 0.12 3.16 6.22 -52.49 -0.33 2.83 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.10 1.72 7.06 -51.93 -0.37 1.36 16 36 H 0.40 3.24 8.23 -40.82 -0.34 2.90 16 37 H 0.15 1.39 8.06 -51.93 -0.42 0.97 16 38 H 0.15 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.14 0.47 7.92 -51.93 -0.41 0.06 16 40 H 0.15 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.39 1.29 8.92 45.56 0.41 1.69 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -37.64 357.37 -9.60 -47.24 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.23 Total: 9.90 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.95 Total: -26.94 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: 0.35 Total: -28.70 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.47 Total: -42.92 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 16 Polarization: 23.26 SS G_CDS: -0.65 Total: 22.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.64 -9.60 -47.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363089643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.419 kcal (2) G-P(sol) polarization free energy of solvation -37.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds