Wall clock time and date at job start Tue Mar 31 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48503 * 109.47226 * 239.99901 * 3 2 1 5 5 H 1.48499 * 109.47166 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47126 * 120.00042 * 3 2 1 7 7 C 1.39942 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 163.66559 * 7 2 1 9 9 C 1.41395 * 119.99648 * 343.66067 * 7 2 1 10 10 C 1.40732 * 120.24518 * 334.05026 * 9 7 2 11 11 C 1.37606 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24814 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50175 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.24855 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12847 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47250 * 265.02397 * 15 14 13 17 17 O 1.21277 * 120.00221 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99838 * 179.97438 * 16 15 14 19 19 C 1.46489 * 119.99726 * 179.97438 * 18 16 15 20 20 H 1.08998 * 108.89631 * 34.30183 * 19 18 16 21 21 C 1.54205 * 108.92837 * 275.62774 * 19 18 16 22 22 S 1.83647 * 102.94812 * 214.14504 * 21 19 18 23 23 O 1.42097 * 109.89187 * 282.45328 * 22 21 19 24 24 O 1.42095 * 109.80932 * 148.06486 * 22 21 19 25 25 C 1.83824 * 94.17281 * 35.26783 * 22 21 19 26 26 C 1.52389 * 108.92578 * 152.96974 * 19 18 16 27 27 H 1.09003 * 108.92566 * 0.02562 * 26 19 18 28 28 O 1.42899 * 108.92503 * 241.34907 * 26 19 18 29 29 H 0.96998 * 120.00158 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.12957 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87327 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.74954 * 179.72296 * 12 11 10 33 33 H 1.08005 * 119.87510 * 180.02562 * 13 12 11 34 34 H 1.09004 * 109.47017 * 25.02217 * 15 14 13 35 35 H 1.08995 * 109.46928 * 145.02020 * 15 14 13 36 36 H 0.97003 * 119.99868 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.73619 * 332.55706 * 21 19 18 38 38 H 1.09000 * 110.73431 * 95.87190 * 21 19 18 39 39 H 1.09004 * 110.73405 * 206.45244 * 25 22 21 40 40 H 1.09001 * 110.89013 * 83.21429 * 25 22 21 41 41 H 0.96702 * 114.00047 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0553 -1.2307 -0.2636 9 6 1.3439 -2.4118 0.3434 10 6 0.2129 -2.3812 1.1804 11 6 -0.4252 -3.5553 1.5090 12 6 0.0424 -4.7652 1.0192 13 6 1.1554 -4.8072 0.1941 14 6 1.8095 -3.6454 -0.1477 15 6 3.0196 -3.6943 -1.0445 16 6 4.2685 -3.7245 -0.2017 17 8 4.1844 -3.7074 1.0080 18 7 5.4791 -3.7704 -0.7924 19 6 6.6932 -3.7991 0.0268 20 1 6.4913 -4.3630 0.9375 21 6 7.0742 -2.3541 0.4073 22 16 8.9098 -2.4048 0.4294 23 8 9.3621 -3.0233 1.6261 24 8 9.4312 -1.1432 0.0347 25 6 9.0277 -3.5925 -0.9687 26 6 7.7993 -4.4995 -0.7531 27 1 7.4093 -4.8027 -1.7248 28 8 8.2073 -5.6648 -0.0336 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1528 -1.4400 1.5633 31 1 -1.2935 -3.5342 2.1508 32 1 -0.4619 -5.6822 1.2858 33 1 1.5108 -5.7553 -0.1821 34 1 2.9772 -4.5906 -1.6634 35 1 3.0339 -2.8117 -1.6839 36 1 5.5465 -3.7844 -1.7600 37 1 6.7162 -1.6501 -0.3439 38 1 6.6851 -2.0993 1.3931 39 1 9.9498 -4.1706 -0.9073 40 1 8.9617 -3.0745 -1.9254 41 1 8.9107 -6.1680 -0.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363089643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:47 Heat of formation + Delta-G solvation = -158.924726 kcal Electronic energy + Delta-G solvation = -27476.031655 eV Core-core repulsion = 23446.857401 eV Total energy + Delta-G solvation = -4029.174254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08342 -39.56002 -38.75672 -38.10702 -37.14045 -36.05916 -35.48859 -33.66732 -32.71584 -31.33073 -30.32805 -28.52259 -26.99185 -26.07405 -22.84117 -22.58171 -21.91159 -21.01873 -20.09410 -19.06574 -18.62409 -18.29156 -17.59154 -17.34071 -17.17621 -16.87400 -16.55879 -16.19062 -16.08619 -15.59786 -15.38570 -15.28785 -14.94164 -14.68779 -14.35986 -14.06607 -13.89430 -13.49441 -13.35708 -13.29567 -13.20948 -13.06148 -12.90761 -12.76003 -12.63556 -12.50635 -12.46978 -12.12623 -12.04121 -11.75331 -11.31127 -11.20361 -11.03210 -11.01997 -10.72458 -10.18687 -9.21818 -9.15320 -8.58889 -6.28317 -1.02111 1.00135 1.14004 1.36124 1.40332 1.45214 1.54257 1.80579 2.12601 2.19044 2.50715 2.79238 2.84123 3.08560 3.38122 3.56512 3.61967 3.78052 3.92278 4.14539 4.23218 4.36135 4.42355 4.46032 4.63249 4.65072 4.71317 4.76524 4.82247 4.84120 5.08767 5.21198 5.37447 5.43328 5.56200 5.78860 6.04801 6.17695 6.22723 6.42571 6.62752 6.75721 6.83128 6.99935 7.12896 7.43216 8.37421 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003831 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.212348 B = 7307.123798 C = 8982.442971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.248 1.248 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.077 0.923 9 C 0.096 3.904 10 C -0.196 4.196 11 C -0.119 4.119 12 C -0.244 4.244 13 C -0.091 4.091 14 C -0.189 4.189 15 C -0.069 4.069 16 C 0.518 3.482 17 O -0.569 6.569 18 N -0.710 5.710 19 C 0.146 3.854 20 H 0.087 0.913 21 C -0.599 4.599 22 S 2.388 3.612 23 O -0.966 6.966 24 O -0.970 6.970 25 C -0.577 4.577 26 C 0.111 3.889 27 H 0.132 0.868 28 O -0.575 6.575 29 H 0.285 0.715 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.422 0.578 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.488 -7.409 -10.720 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.511 4.511 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.215 4.215 11 C -0.137 4.137 12 C -0.263 4.263 13 C -0.109 4.109 14 C -0.190 4.190 15 C -0.108 4.108 16 C 0.306 3.694 17 O -0.446 6.446 18 N -0.367 5.367 19 C 0.039 3.961 20 H 0.105 0.895 21 C -0.728 4.728 22 S 2.574 3.426 23 O -0.963 6.963 24 O -0.967 6.967 25 C -0.710 4.710 26 C 0.050 3.950 27 H 0.149 0.851 28 O -0.385 6.385 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.262 0.738 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.196 0.804 40 H 0.207 0.793 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 17.469 -6.559 -8.859 20.656 hybrid contribution -0.495 0.538 -0.436 0.852 sum 16.974 -6.020 -9.295 20.267 Atomic orbital electron populations 1.69877 1.08840 1.30201 1.36357 1.26640 0.95360 1.04090 0.91625 0.85502 0.79081 0.76694 0.80042 1.17124 1.19418 1.19853 1.19621 0.97324 0.91728 1.42472 0.90507 1.17737 0.91265 0.92949 0.88633 1.21308 1.00762 0.96678 1.02766 1.20944 0.99185 0.93528 1.00073 1.20714 1.01783 0.96614 1.07234 1.20757 0.95560 0.96797 0.97782 1.19567 1.00555 0.93264 1.05654 1.20308 0.88485 1.05180 0.96863 1.21254 0.85549 0.73906 0.88690 1.90694 1.87452 1.49346 1.17113 1.45889 1.03461 1.76602 1.10709 1.20751 0.86476 0.92157 0.96737 0.89478 1.30949 1.25641 1.04346 1.11903 1.09057 0.78155 0.76789 0.78625 1.93601 1.79045 1.77902 1.45795 1.93574 1.77181 1.41871 1.84072 1.31069 1.07033 1.14449 1.18434 1.21942 0.89892 0.86107 0.97021 0.85105 1.86645 1.60734 1.38699 1.52429 0.90448 0.88748 0.87987 0.86888 0.86383 0.86360 0.87811 0.73830 0.82327 0.86042 0.80406 0.79326 0.73817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.51 10.97 21.83 0.24 -43.27 16 2 C 0.04 1.88 5.16 85.26 0.44 2.32 16 3 Si 0.97 38.46 29.59 68.60 2.03 40.49 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.48 -25.24 8.14 23.46 0.19 -25.05 16 8 H 0.08 3.81 6.67 -2.91 -0.02 3.79 16 9 C 0.10 5.18 5.56 -21.29 -0.12 5.06 16 10 C -0.20 -10.81 8.69 22.73 0.20 -10.61 16 11 C -0.12 -5.89 10.02 22.22 0.22 -5.67 16 12 C -0.24 -11.07 10.05 22.46 0.23 -10.85 16 13 C -0.09 -3.99 9.66 22.22 0.21 -3.77 16 14 C -0.19 -8.73 4.43 -19.40 -0.09 -8.81 16 15 C -0.07 -2.37 5.18 29.10 0.15 -2.22 16 16 C 0.52 17.86 7.41 87.66 0.65 18.50 16 17 O -0.57 -26.30 15.67 -3.02 -0.05 -26.34 16 18 N -0.71 -15.40 4.93 -441.58 -2.18 -17.58 16 19 C 0.15 3.10 2.78 45.20 0.13 3.22 16 20 H 0.09 2.56 7.22 -2.39 -0.02 2.54 16 21 C -0.60 -12.99 6.99 72.39 0.51 -12.48 16 22 S 2.39 44.14 6.07 -56.49 -0.34 43.80 16 23 O -0.97 -26.61 18.17 -127.53 -2.32 -28.93 16 24 O -0.97 -24.10 18.16 -127.53 -2.32 -26.41 16 25 C -0.58 -3.10 7.08 72.39 0.51 -2.58 16 26 C 0.11 1.13 3.72 30.80 0.11 1.24 16 27 H 0.13 0.38 7.45 -2.39 -0.02 0.37 16 28 O -0.57 -7.54 13.07 -148.98 -1.95 -9.48 16 29 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 30 H 0.09 5.49 6.22 -2.91 -0.02 5.47 16 31 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.12 3.04 8.05 -2.38 -0.02 3.02 16 35 H 0.10 3.46 7.06 -2.39 -0.02 3.45 16 36 H 0.42 4.94 8.23 -92.71 -0.76 4.18 16 37 H 0.16 2.89 8.06 -2.39 -0.02 2.87 16 38 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.18 -0.02 7.92 -2.39 -0.02 -0.04 16 40 H 0.19 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.41 0.77 8.92 -74.06 -0.66 0.11 16 Total: -1.00 -89.19 357.37 -3.86 -93.05 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.33 Total: 26.37 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 3.35 Total: -51.69 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -1.94 Total: -60.85 kcal Atomic # 8 Polarization: -84.54 SS G_CDS: -6.63 Total: -91.17 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: 44.14 SS G_CDS: -0.34 Total: 43.80 kcal Total: -89.19 -3.86 -93.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363089643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.878 kcal (2) G-P(sol) polarization free energy of solvation -89.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds