Wall clock time and date at job start Tue Mar 31 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48503 * 109.47101 * 264.66957 * 3 2 1 5 5 H 1.48494 * 109.47171 * 24.66999 * 3 2 1 6 6 H 1.48500 * 109.46895 * 144.67126 * 3 2 1 7 7 C 1.37880 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99712 * 4.98065 * 7 2 1 9 9 C 1.50697 * 119.99936 * 184.98327 * 7 2 1 10 10 H 1.09005 * 109.47389 * 25.09770 * 9 7 2 11 11 C 1.50697 * 109.47171 * 145.09756 * 9 7 2 12 12 O 1.21280 * 120.00212 * 119.99505 * 11 9 7 13 13 N 1.34782 * 119.99966 * 299.99470 * 11 9 7 14 14 C 1.46500 * 120.00103 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.64226 * 34.30530 * 14 13 11 16 16 C 1.54166 * 109.64353 * 273.87279 * 14 13 11 17 17 S 1.82924 * 105.08327 * 212.36702 * 16 14 13 18 18 O 1.42104 * 109.34814 * 115.52680 * 17 16 14 19 19 O 1.42094 * 109.35784 * 248.73000 * 17 16 14 20 20 C 1.83291 * 97.01641 * 2.12895 * 17 16 14 21 21 C 1.53875 * 109.53783 * 154.66567 * 14 13 11 22 22 H 1.08999 * 110.02801 * 47.67638 * 21 14 13 23 23 O 1.42903 * 110.02617 * 286.26305 * 21 14 13 24 24 C 1.50700 * 109.47159 * 265.09367 * 9 7 2 25 25 C 1.38234 * 120.00119 * 305.02834 * 24 9 7 26 26 C 1.38236 * 120.00168 * 179.76713 * 25 24 9 27 27 C 1.38238 * 119.99697 * 0.47668 * 26 25 24 28 28 C 1.38240 * 119.99930 * 359.79413 * 27 26 25 29 29 C 1.38230 * 120.00011 * 359.95590 * 28 27 26 30 30 H 0.97003 * 119.99614 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99722 * 0.02562 * 13 11 9 32 32 H 1.08993 * 110.32563 * 331.27052 * 16 14 13 33 33 H 1.09003 * 110.32026 * 93.47493 * 16 14 13 34 34 H 1.09006 * 110.78734 * 141.47707 * 20 17 16 35 35 H 1.08994 * 110.78862 * 264.93973 * 20 17 16 36 36 H 0.96700 * 113.99570 * 180.02562 * 23 21 14 37 37 H 1.07997 * 119.99701 * 359.97438 * 25 24 9 38 38 H 1.08001 * 120.00436 * 180.24795 * 26 25 24 39 39 H 1.08006 * 119.99842 * 179.77142 * 27 26 25 40 40 H 1.08000 * 119.99321 * 179.97438 * 28 27 26 41 41 H 1.07996 * 119.99816 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3949 2.6825 0.5844 6 1 3.4858 1.4752 0.8096 7 6 2.0045 -1.1941 -0.0005 8 1 1.4675 -2.1275 -0.0822 9 6 3.5072 -1.1966 0.1128 10 1 3.8353 -0.2866 0.6153 11 6 3.9489 -2.3972 0.9093 12 8 4.6845 -3.2206 0.4076 13 7 3.5264 -2.5560 2.1794 14 6 3.9552 -3.7234 2.9535 15 1 4.9729 -3.9952 2.6732 16 6 3.0071 -4.9067 2.6751 17 16 2.9539 -5.8524 4.2400 18 8 1.6368 -5.8088 4.7718 19 8 3.6046 -7.1023 4.0573 20 6 4.0385 -4.7392 5.2114 21 6 3.9033 -3.3923 4.4553 22 1 2.9521 -2.9202 4.7009 23 8 4.9847 -2.5252 4.8030 24 6 4.1148 -1.2567 -1.2649 25 6 3.7600 -2.2722 -2.1331 26 6 4.3137 -2.3246 -3.3987 27 6 5.2297 -1.3671 -3.7925 28 6 5.5887 -0.3548 -2.9222 29 6 5.0311 -0.2995 -1.6586 30 1 -0.4850 0.8401 -0.0004 31 1 2.9377 -1.8976 2.5805 32 1 2.0123 -4.5426 2.4189 33 1 3.4026 -5.5275 1.8711 34 1 3.6784 -4.6455 6.2360 35 1 5.0699 -5.0912 5.1932 36 1 5.0072 -2.2800 5.7381 37 1 3.0477 -3.0227 -1.8239 38 1 4.0335 -3.1157 -4.0784 39 1 5.6651 -1.4102 -4.7799 40 1 6.3047 0.3930 -3.2299 41 1 5.3113 0.4916 -0.9789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363498738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:28 Heat of formation + Delta-G solvation = -123.196563 kcal Electronic energy + Delta-G solvation = -27727.927619 eV Core-core repulsion = 23700.302655 eV Total energy + Delta-G solvation = -4027.624964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.74155 -38.55725 -37.55504 -37.21997 -36.20632 -34.89440 -33.73917 -32.07003 -31.52848 -30.16731 -29.37108 -27.76153 -25.12712 -23.61245 -21.95054 -21.72334 -20.85707 -19.54146 -19.06292 -17.95269 -17.23919 -17.19249 -16.64566 -16.17893 -16.13053 -15.91003 -15.47662 -14.72001 -14.56800 -14.34447 -14.07958 -13.89243 -13.74287 -13.42833 -13.09023 -12.98227 -12.73622 -12.57095 -12.39581 -12.29220 -12.19885 -12.13258 -11.89008 -11.40679 -11.36445 -11.22755 -11.04623 -10.69400 -10.51059 -10.43238 -10.27955 -9.97310 -9.61576 -9.10256 -8.78558 -8.72197 -8.17086 -7.85823 -6.37630 -4.42793 -0.22325 2.11458 2.17631 2.26697 3.09697 3.18048 3.22946 3.25121 3.40356 3.47921 3.64371 3.91994 4.15729 4.16157 4.37539 4.52746 4.59373 4.71264 4.79558 4.94087 5.09916 5.28427 5.51498 5.55218 5.58996 5.69621 5.77606 5.90620 6.01304 6.23937 6.28342 6.41421 6.69844 6.80380 6.84674 7.13689 7.20427 7.21413 7.22075 7.54109 7.75717 8.03488 8.15760 8.61170 8.94056 9.20059 10.72938 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003914 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.050179 B = 7152.161401 C = 7956.711548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.019 3.981 10 H 0.075 0.925 11 C 0.541 3.459 12 O -0.555 6.555 13 N -0.713 5.713 14 C 0.161 3.839 15 H 0.114 0.886 16 C -0.601 4.601 17 S 2.399 3.601 18 O -0.931 6.931 19 O -0.934 6.934 20 C -0.633 4.633 21 C 0.105 3.895 22 H 0.091 0.909 23 O -0.538 6.538 24 C -0.029 4.029 25 C -0.073 4.073 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.136 4.136 30 H 0.270 0.730 31 H 0.410 0.590 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.385 0.615 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 -3.912 8.689 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.101 0.899 9 C -0.002 4.002 10 H 0.093 0.907 11 C 0.330 3.670 12 O -0.433 6.433 13 N -0.366 5.366 14 C 0.053 3.947 15 H 0.132 0.868 16 C -0.733 4.733 17 S 2.581 3.419 18 O -0.928 6.928 19 O -0.931 6.931 20 C -0.762 4.762 21 C 0.044 3.956 22 H 0.108 0.892 23 O -0.344 6.344 24 C -0.030 4.030 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.146 4.146 29 C -0.154 4.154 30 H 0.080 0.920 31 H 0.246 0.754 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.896 -5.269 7.933 12.371 hybrid contribution 0.237 2.038 0.494 2.110 sum 8.133 -3.231 8.428 12.150 Atomic orbital electron populations 1.69858 1.06177 1.27615 1.47909 1.24976 0.94707 0.98793 0.93418 0.87023 0.80149 0.83760 0.79801 1.19127 1.21096 1.18654 1.20520 0.86128 0.95413 1.53086 0.89887 1.18577 0.98399 0.93774 0.89447 0.90684 1.21226 0.77327 0.87873 0.80561 1.90602 1.37112 1.45739 1.69857 1.45765 1.52270 1.24587 1.13937 1.20960 0.99456 0.85856 0.88446 0.86820 1.31051 1.10325 1.11175 1.20727 1.08744 0.76445 0.77143 0.79611 1.93646 1.34531 1.87234 1.77354 1.93624 1.76580 1.37901 1.84997 1.31409 1.17980 1.13298 1.13529 1.22596 0.92450 0.87816 0.92759 0.89166 1.86589 1.49101 1.66979 1.31705 1.20054 0.92482 0.93390 0.97059 1.20832 0.98026 0.97654 0.92624 1.21036 0.98133 0.98959 0.96570 1.20874 0.99791 0.96303 0.99105 1.20888 1.00650 0.98693 0.94397 1.20972 0.98136 0.99725 0.96609 0.92020 0.75367 0.82995 0.83181 0.83972 0.83342 0.76737 0.86539 0.87110 0.87303 0.87242 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.98 13.96 55.43 0.77 -23.21 16 2 C 0.09 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 19.26 27.18 -169.99 -4.62 14.64 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.39 6.06 56.52 0.34 -5.05 16 7 C -0.51 -12.52 8.06 -34.44 -0.28 -12.80 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.02 0.42 1.89 -94.08 -0.18 0.24 16 10 H 0.08 1.60 4.89 -51.93 -0.25 1.34 16 11 C 0.54 10.88 7.02 -10.98 -0.08 10.80 16 12 O -0.56 -12.20 15.03 5.56 0.08 -12.12 16 13 N -0.71 -11.53 4.95 -52.77 -0.26 -11.79 16 14 C 0.16 2.06 2.57 -66.87 -0.17 1.88 16 15 H 0.11 1.57 7.56 -51.93 -0.39 1.17 16 16 C -0.60 -6.97 6.92 37.77 0.26 -6.71 16 17 S 2.40 24.29 6.11 -107.50 -0.66 23.63 16 18 O -0.93 -12.36 18.15 -57.71 -1.05 -13.41 16 19 O -0.93 -12.51 18.14 -57.71 -1.05 -13.56 16 20 C -0.63 -4.43 6.99 38.24 0.27 -4.16 16 21 C 0.11 0.96 3.42 -25.20 -0.09 0.88 16 22 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 23 O -0.54 -5.11 13.38 -35.23 -0.47 -5.58 16 24 C -0.03 -0.62 4.09 -104.62 -0.43 -1.05 16 25 C -0.07 -1.55 8.25 -39.58 -0.33 -1.88 16 26 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 27 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 28 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 29 C -0.14 -2.71 9.46 -39.59 -0.37 -3.08 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.41 6.23 8.48 -40.82 -0.35 5.89 16 32 H 0.15 1.81 8.07 -51.93 -0.42 1.39 16 33 H 0.15 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.15 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.38 1.78 9.11 45.56 0.42 2.20 16 37 H 0.12 2.53 7.93 -52.49 -0.42 2.11 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.99 7.95 -52.49 -0.42 1.57 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -35.78 358.53 -8.93 -44.71 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.41 Total: 13.34 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.68 Total: -22.07 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.51 Total: -35.00 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.48 Total: -44.66 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.62 Total: 14.64 kcal Atomic # 16 Polarization: 24.29 SS G_CDS: -0.66 Total: 23.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.78 -8.93 -44.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363498738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.489 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds