Wall clock time and date at job start Tue Mar 31 2020 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48503 * 109.47101 * 264.66957 * 3 2 1 5 5 H 1.48494 * 109.47171 * 24.66999 * 3 2 1 6 6 H 1.48500 * 109.46895 * 144.67126 * 3 2 1 7 7 C 1.37880 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99712 * 4.98065 * 7 2 1 9 9 C 1.50697 * 119.99936 * 184.98327 * 7 2 1 10 10 H 1.09005 * 109.47389 * 25.09770 * 9 7 2 11 11 C 1.50697 * 109.47171 * 145.09756 * 9 7 2 12 12 O 1.21280 * 120.00212 * 119.99505 * 11 9 7 13 13 N 1.34782 * 119.99966 * 299.99470 * 11 9 7 14 14 C 1.46500 * 120.00103 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.64226 * 34.30530 * 14 13 11 16 16 C 1.54166 * 109.64353 * 273.87279 * 14 13 11 17 17 S 1.82924 * 105.08327 * 212.36702 * 16 14 13 18 18 O 1.42104 * 109.34814 * 115.52680 * 17 16 14 19 19 O 1.42094 * 109.35784 * 248.73000 * 17 16 14 20 20 C 1.83291 * 97.01641 * 2.12895 * 17 16 14 21 21 C 1.53875 * 109.53783 * 154.66567 * 14 13 11 22 22 H 1.08999 * 110.02801 * 47.67638 * 21 14 13 23 23 O 1.42903 * 110.02617 * 286.26305 * 21 14 13 24 24 C 1.50700 * 109.47159 * 265.09367 * 9 7 2 25 25 C 1.38234 * 120.00119 * 305.02834 * 24 9 7 26 26 C 1.38236 * 120.00168 * 179.76713 * 25 24 9 27 27 C 1.38238 * 119.99697 * 0.47668 * 26 25 24 28 28 C 1.38240 * 119.99930 * 359.79413 * 27 26 25 29 29 C 1.38230 * 120.00011 * 359.95590 * 28 27 26 30 30 H 0.97003 * 119.99614 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99722 * 0.02562 * 13 11 9 32 32 H 1.08993 * 110.32563 * 331.27052 * 16 14 13 33 33 H 1.09003 * 110.32026 * 93.47493 * 16 14 13 34 34 H 1.09006 * 110.78734 * 141.47707 * 20 17 16 35 35 H 1.08994 * 110.78862 * 264.93973 * 20 17 16 36 36 H 0.96700 * 113.99570 * 180.02562 * 23 21 14 37 37 H 1.07997 * 119.99701 * 359.97438 * 25 24 9 38 38 H 1.08001 * 120.00436 * 180.24795 * 26 25 24 39 39 H 1.08006 * 119.99842 * 179.77142 * 27 26 25 40 40 H 1.08000 * 119.99321 * 179.97438 * 28 27 26 41 41 H 1.07996 * 119.99816 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3949 2.6825 0.5844 6 1 3.4858 1.4752 0.8096 7 6 2.0045 -1.1941 -0.0005 8 1 1.4675 -2.1275 -0.0822 9 6 3.5072 -1.1966 0.1128 10 1 3.8353 -0.2866 0.6153 11 6 3.9489 -2.3972 0.9093 12 8 4.6845 -3.2206 0.4076 13 7 3.5264 -2.5560 2.1794 14 6 3.9552 -3.7234 2.9535 15 1 4.9729 -3.9952 2.6732 16 6 3.0071 -4.9067 2.6751 17 16 2.9539 -5.8524 4.2400 18 8 1.6368 -5.8088 4.7718 19 8 3.6046 -7.1023 4.0573 20 6 4.0385 -4.7392 5.2114 21 6 3.9033 -3.3923 4.4553 22 1 2.9521 -2.9202 4.7009 23 8 4.9847 -2.5252 4.8030 24 6 4.1148 -1.2567 -1.2649 25 6 3.7600 -2.2722 -2.1331 26 6 4.3137 -2.3246 -3.3987 27 6 5.2297 -1.3671 -3.7925 28 6 5.5887 -0.3548 -2.9222 29 6 5.0311 -0.2995 -1.6586 30 1 -0.4850 0.8401 -0.0004 31 1 2.9377 -1.8976 2.5805 32 1 2.0123 -4.5426 2.4189 33 1 3.4026 -5.5275 1.8711 34 1 3.6784 -4.6455 6.2360 35 1 5.0699 -5.0912 5.1932 36 1 5.0072 -2.2800 5.7381 37 1 3.0477 -3.0227 -1.8239 38 1 4.0335 -3.1157 -4.0784 39 1 5.6651 -1.4102 -4.7799 40 1 6.3047 0.3930 -3.2299 41 1 5.3113 0.4916 -0.9789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363498738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:27 Heat of formation + Delta-G solvation = -153.701373 kcal Electronic energy + Delta-G solvation = -27729.250407 eV Core-core repulsion = 23700.302655 eV Total energy + Delta-G solvation = -4028.947752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16945 -39.79382 -38.73041 -38.19771 -37.18426 -35.95994 -35.53418 -33.48481 -32.99235 -31.63378 -30.30981 -29.31807 -26.25963 -25.22595 -23.39958 -22.91509 -22.08984 -21.02153 -19.96355 -19.10447 -18.78273 -18.29376 -17.87509 -17.51520 -17.25749 -16.85964 -16.64501 -16.37157 -15.97051 -15.55058 -15.38033 -15.03971 -14.94071 -14.76146 -14.37939 -14.20443 -14.05733 -13.95572 -13.74400 -13.50984 -13.35063 -13.26765 -13.15460 -12.97020 -12.72587 -12.32670 -12.23903 -12.03681 -11.96446 -11.64788 -11.56347 -11.40423 -11.15862 -10.90629 -10.54345 -10.08541 -9.65090 -9.37803 -8.34605 -6.42858 -1.08255 0.63551 0.69846 1.32561 1.40716 1.40976 1.44204 1.83704 2.27137 2.29881 2.49692 2.79783 2.96144 3.02618 3.14969 3.36359 3.48447 3.83669 3.88098 3.93212 4.09465 4.21013 4.26208 4.34657 4.38579 4.42537 4.58602 4.61161 4.77857 4.81470 4.83285 4.89798 5.19058 5.31525 5.38642 5.52752 5.69303 5.73409 5.93761 6.19761 6.29726 6.60184 6.62367 6.80775 7.22607 7.40569 8.79354 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003914 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.050179 B = 7152.161401 C = 7956.711548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.039 3.961 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.233 1.233 7 C -0.500 4.500 8 H 0.042 0.958 9 C 0.020 3.980 10 H 0.081 0.919 11 C 0.536 3.464 12 O -0.580 6.580 13 N -0.705 5.705 14 C 0.149 3.851 15 H 0.103 0.897 16 C -0.611 4.611 17 S 2.424 3.576 18 O -0.961 6.961 19 O -0.968 6.968 20 C -0.595 4.595 21 C 0.109 3.891 22 H 0.111 0.889 23 O -0.554 6.554 24 C -0.057 4.057 25 C -0.103 4.103 26 C -0.134 4.134 27 C -0.137 4.137 28 C -0.125 4.125 29 C -0.153 4.153 30 H 0.270 0.730 31 H 0.414 0.586 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -2.498 9.713 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.161 4.161 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.157 1.157 7 C -0.538 4.538 8 H 0.060 0.940 9 C -0.001 4.001 10 H 0.099 0.901 11 C 0.325 3.675 12 O -0.460 6.460 13 N -0.356 5.356 14 C 0.042 3.958 15 H 0.121 0.879 16 C -0.741 4.741 17 S 2.608 3.392 18 O -0.958 6.958 19 O -0.965 6.965 20 C -0.728 4.728 21 C 0.048 3.952 22 H 0.128 0.872 23 O -0.364 6.364 24 C -0.058 4.058 25 C -0.122 4.122 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.143 4.143 29 C -0.171 4.171 30 H 0.080 0.920 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.260 0.740 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.446 -3.883 8.978 14.311 hybrid contribution -0.497 1.528 0.150 1.614 sum 9.949 -2.355 9.128 13.706 Atomic orbital electron populations 1.69986 1.07896 1.28415 1.50253 1.25659 0.95226 1.02017 0.93244 0.86152 0.80060 0.79615 0.79817 1.19680 1.20916 1.15671 1.20446 0.87784 0.93708 1.51861 0.93987 1.18518 0.96263 0.94788 0.90537 0.90104 1.20992 0.77482 0.87322 0.81711 1.90573 1.38490 1.46277 1.70694 1.45687 1.51325 1.25588 1.13021 1.21273 0.98870 0.84744 0.90936 0.87916 1.31050 1.09419 1.11197 1.22411 1.07907 0.76018 0.76649 0.78588 1.93602 1.37137 1.87772 1.77337 1.93576 1.77018 1.40468 1.85406 1.31234 1.17749 1.09633 1.14162 1.22502 0.93568 0.89162 0.89959 0.87151 1.86555 1.48906 1.66850 1.34062 1.20112 0.94195 0.94657 0.96797 1.20829 0.99050 0.97857 0.94448 1.21355 0.98022 1.00086 0.95715 1.21347 0.98473 0.95014 1.00674 1.21363 1.00336 0.99283 0.93316 1.21242 0.98131 0.99583 0.98134 0.92050 0.74896 0.84019 0.84245 0.79871 0.81401 0.74017 0.89126 0.84885 0.83326 0.83479 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.48 13.96 21.45 0.30 -52.19 16 2 C 0.04 2.05 5.47 84.66 0.46 2.51 16 3 Si 0.92 39.48 27.18 68.60 1.86 41.34 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.23 -8.84 6.06 99.48 0.60 -8.24 16 7 C -0.50 -25.52 8.06 25.60 0.21 -25.32 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.02 0.90 1.89 -13.03 -0.02 0.87 16 10 H 0.08 3.40 4.89 -2.38 -0.01 3.39 16 11 C 0.54 22.32 7.02 87.66 0.62 22.93 16 12 O -0.58 -26.53 15.03 -3.03 -0.05 -26.58 16 13 N -0.70 -23.26 4.95 -439.26 -2.17 -25.44 16 14 C 0.15 3.79 2.57 45.68 0.12 3.91 16 15 H 0.10 2.86 7.56 -2.39 -0.02 2.84 16 16 C -0.61 -14.95 6.92 72.38 0.50 -14.45 16 17 S 2.42 47.61 6.11 -56.49 -0.34 47.27 16 18 O -0.96 -25.08 18.15 -127.49 -2.31 -27.39 16 19 O -0.97 -25.77 18.14 -127.49 -2.31 -28.08 16 20 C -0.60 -6.18 6.99 72.68 0.51 -5.67 16 21 C 0.11 1.73 3.42 31.59 0.11 1.84 16 22 H 0.11 1.37 8.11 -2.39 -0.02 1.35 16 23 O -0.55 -8.70 13.38 -148.98 -1.99 -10.69 16 24 C -0.06 -2.48 4.09 -19.87 -0.08 -2.56 16 25 C -0.10 -4.52 8.25 22.27 0.18 -4.34 16 26 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 27 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 28 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 29 C -0.15 -5.83 9.46 22.27 0.21 -5.62 16 30 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.41 12.73 8.48 -92.71 -0.79 11.94 16 32 H 0.14 3.71 8.07 -2.39 -0.02 3.69 16 33 H 0.14 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.18 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.41 2.04 9.11 -74.06 -0.67 1.37 16 37 H 0.09 4.27 7.93 -2.91 -0.02 4.25 16 38 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.12 4.17 7.95 -2.91 -0.02 4.15 16 Total: -1.00 -81.27 358.53 -4.02 -85.29 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.48 Total: 34.84 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.48 Total: -38.37 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.87 Total: -77.62 kcal Atomic # 8 Polarization: -86.08 SS G_CDS: -6.67 Total: -92.75 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.86 Total: 41.34 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.34 Total: 47.27 kcal Total: -81.27 -4.02 -85.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363498738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.411 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds