Wall clock time and date at job start Tue Mar 31 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47516 * 2 1 4 4 C 1.50707 * 109.47204 * 239.99615 * 2 1 3 5 5 H 1.08001 * 119.99608 * 240.00589 * 4 2 1 6 6 C 1.37871 * 119.99869 * 60.00398 * 4 2 1 7 7 N 1.31520 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47164 * 59.99861 * 8 6 4 10 10 H 1.48500 * 109.47529 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46969 * 300.00104 * 8 6 4 12 12 C 1.53003 * 109.46517 * 119.99916 * 2 1 3 13 13 S 1.81394 * 109.47387 * 299.99470 * 12 2 1 14 14 O 1.42109 * 110.53807 * 68.37945 * 13 12 2 15 15 O 1.42098 * 110.54422 * 291.62974 * 13 12 2 16 16 N 1.65602 * 104.44973 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99612 * 65.28269 * 16 13 12 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.31131 * 126.55293 * 89.70426 * 18 17 16 20 20 C 1.34498 * 105.61192 * 179.97438 * 19 18 17 21 21 C 1.50697 * 126.28547 * 180.12885 * 20 19 18 22 22 F 1.39891 * 109.47236 * 210.24219 * 21 20 19 23 23 F 1.39905 * 109.47053 * 330.24193 * 21 20 19 24 24 N 1.29941 * 107.42476 * 0.35199 * 20 19 18 25 25 O 1.21301 * 110.25289 * 359.78057 * 24 20 19 26 26 H 1.08994 * 109.47224 * 300.00735 * 1 2 3 27 27 H 1.09008 * 109.46641 * 59.99898 * 1 2 3 28 28 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47371 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47114 * 299.99832 * 3 2 1 31 31 H 1.08998 * 109.47012 * 59.99397 * 3 2 1 32 32 H 0.97007 * 119.99442 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.46641 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47327 * 60.00523 * 12 2 1 35 35 H 0.97001 * 119.99942 * 244.99793 * 16 13 12 36 36 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 37 37 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 38 38 H 1.09005 * 109.46935 * 90.24050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5205 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7409 3.9937 17 6 3.5008 -0.7933 4.2096 18 6 3.7836 -1.3168 5.5943 19 7 3.9452 -2.5723 5.9366 20 6 4.1746 -2.5594 7.2618 21 6 4.4270 -3.7615 8.1349 22 9 3.9538 -3.5073 9.4266 23 9 3.7608 -4.8714 7.6042 24 7 4.1338 -1.3206 7.6518 25 8 3.9103 -0.5908 6.7090 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7083 1.1607 -3.4845 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 1.4555 -1.2151 4.5930 36 1 3.9545 -1.4547 3.4715 37 1 3.9200 0.2076 4.1070 38 1 5.4973 -3.9643 8.1734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365420778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:40 Heat of formation + Delta-G solvation = -94.856596 kcal Electronic energy + Delta-G solvation = -27495.895045 eV Core-core repulsion = 22947.562215 eV Total energy + Delta-G solvation = -4548.332830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.66058 -47.67788 -46.31186 -36.94982 -36.68046 -36.37301 -35.98080 -35.45378 -32.86333 -31.73381 -28.51803 -27.47176 -26.74773 -25.78791 -25.28394 -24.22142 -22.42793 -19.90437 -19.24345 -18.90595 -18.76290 -17.88071 -17.85619 -17.39963 -17.01026 -16.57026 -15.98845 -15.65270 -15.02453 -14.80817 -14.71085 -14.48647 -14.07314 -13.98244 -13.65383 -13.19147 -13.11897 -13.04292 -12.59071 -12.57819 -12.28270 -12.20856 -11.98809 -11.75116 -11.62163 -11.20318 -11.11654 -11.04399 -10.79361 -10.78154 -10.50398 -10.35336 -10.21763 -9.93187 -9.72491 -9.50545 -8.77753 -8.45227 -6.08897 -4.21438 0.29333 0.68207 1.36516 2.07953 2.28628 2.96033 3.03525 3.23847 3.29905 3.31181 3.32246 3.87976 4.10521 4.12030 4.32443 4.40562 4.51871 4.60275 4.85555 4.99542 5.16074 5.18726 5.23074 5.54442 5.66533 6.27133 6.61886 6.66711 6.71994 6.82459 6.96810 7.24544 7.38240 7.42999 7.62472 7.92138 8.02775 8.26216 8.77008 9.44582 10.92357 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.002612 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.021097 B =10718.880114 C =11390.021624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 C -0.165 4.165 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.579 4.579 13 S 2.590 3.410 14 O -0.953 6.953 15 O -0.956 6.956 16 N -1.129 6.129 17 C 0.211 3.789 18 C 0.191 3.809 19 N -0.440 5.440 20 C 0.086 3.914 21 C 0.379 3.621 22 F -0.181 7.181 23 F -0.174 7.174 24 N -0.340 5.340 25 O 0.109 5.891 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.418 0.582 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.490 -6.293 17.205 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 C -0.223 4.223 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.713 4.713 13 S 2.689 3.311 14 O -0.943 6.943 15 O -0.946 6.946 16 N -0.887 5.887 17 C 0.083 3.917 18 C -0.031 4.031 19 N -0.174 5.174 20 C -0.188 4.188 21 C 0.324 3.676 22 F -0.162 7.162 23 F -0.155 7.155 24 N -0.041 5.041 25 O 0.042 5.958 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.115 -5.551 17.911 20.432 hybrid contribution 0.300 -1.251 -0.877 1.557 sum 8.415 -6.802 17.034 20.180 Atomic orbital electron populations 1.22295 0.96867 1.00761 1.02394 1.17944 0.92882 0.92238 0.88903 1.22292 0.99788 0.97723 1.02467 1.20892 1.31995 1.12194 0.89316 0.92234 1.24932 0.94829 0.94954 0.98958 1.69790 1.36078 1.22532 1.23688 0.86586 0.79144 0.79729 0.82100 1.20250 1.21196 1.20245 1.30541 1.11381 1.13145 1.16273 1.05942 0.74663 0.75091 0.75435 1.93588 1.28868 1.86396 1.85484 1.93561 1.78069 1.37631 1.85350 1.56120 1.11891 1.71757 1.48883 1.19796 0.83374 1.04302 0.84271 1.28865 0.95974 0.84824 0.93448 1.71907 1.17391 1.18925 1.09190 1.26443 1.05957 0.95069 0.91339 1.19185 0.96544 0.77585 0.74312 1.93087 1.90858 1.94172 1.38081 1.93104 1.83470 1.52726 1.86221 1.74708 1.16251 1.02932 1.10168 1.85402 1.62002 1.35310 1.13090 0.95388 0.88562 0.94351 0.94325 0.88590 0.95295 0.92617 0.86119 0.85786 0.74903 0.86221 0.85726 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 7.77 37.16 0.29 -3.57 16 2 C 0.08 1.86 0.52 -155.66 -0.08 1.78 16 3 C -0.16 -3.76 7.77 37.15 0.29 -3.47 16 4 C -0.50 -12.52 8.01 -34.44 -0.28 -12.80 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.88 -23.24 9.35 55.43 0.52 -22.72 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C -0.58 -9.85 5.02 37.16 0.19 -9.66 16 13 S 2.59 41.55 4.49 -107.50 -0.48 41.07 16 14 O -0.95 -18.26 15.70 -57.54 -0.90 -19.16 16 15 O -0.96 -17.32 15.11 -57.54 -0.87 -18.19 16 16 N -1.13 -12.72 5.88 -11.66 -0.07 -12.79 16 17 C 0.21 1.84 6.76 -5.19 -0.04 1.81 16 18 C 0.19 1.86 7.91 -13.06 -0.10 1.76 16 19 N -0.44 -4.72 11.51 -9.87 -0.11 -4.83 16 20 C 0.09 0.88 7.71 -156.38 -1.21 -0.33 16 21 C 0.38 2.89 5.86 36.00 0.21 3.10 16 22 F -0.18 -1.65 17.28 2.25 0.04 -1.61 16 23 F -0.17 -1.64 17.29 2.25 0.04 -1.60 16 24 N -0.34 -3.77 12.10 30.90 0.37 -3.40 16 25 O 0.11 1.15 11.31 18.11 0.20 1.35 16 26 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 27 H 0.10 2.45 6.07 -51.92 -0.32 2.13 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.03 0.62 5.46 -51.93 -0.28 0.33 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.12 1.72 8.14 -51.92 -0.42 1.29 16 34 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 35 H 0.42 4.29 8.61 -34.47 -0.30 3.99 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.91 7.68 -51.93 -0.40 0.52 16 38 H 0.15 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -32.36 337.62 -5.98 -38.34 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.97 Total: 3.37 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.82 Total: -19.80 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.71 Total: -43.74 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.57 Total: -36.01 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 41.55 SS G_CDS: -0.48 Total: 41.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.36 -5.98 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365420778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.513 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds