Wall clock time and date at job start Tue Mar 31 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47516 * 2 1 4 4 C 1.50707 * 109.47204 * 239.99615 * 2 1 3 5 5 H 1.08001 * 119.99608 * 240.00589 * 4 2 1 6 6 C 1.37871 * 119.99869 * 60.00398 * 4 2 1 7 7 N 1.31520 * 119.99869 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47164 * 59.99861 * 8 6 4 10 10 H 1.48500 * 109.47529 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46969 * 300.00104 * 8 6 4 12 12 C 1.53003 * 109.46517 * 119.99916 * 2 1 3 13 13 S 1.81394 * 109.47387 * 299.99470 * 12 2 1 14 14 O 1.42109 * 110.53807 * 68.37945 * 13 12 2 15 15 O 1.42098 * 110.54422 * 291.62974 * 13 12 2 16 16 N 1.65602 * 104.44973 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99612 * 65.28269 * 16 13 12 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.31131 * 126.55293 * 89.70426 * 18 17 16 20 20 C 1.34498 * 105.61192 * 179.97438 * 19 18 17 21 21 C 1.50697 * 126.28547 * 180.12885 * 20 19 18 22 22 F 1.39891 * 109.47236 * 210.24219 * 21 20 19 23 23 F 1.39905 * 109.47053 * 330.24193 * 21 20 19 24 24 N 1.29941 * 107.42476 * 0.35199 * 20 19 18 25 25 O 1.21301 * 110.25289 * 359.78057 * 24 20 19 26 26 H 1.08994 * 109.47224 * 300.00735 * 1 2 3 27 27 H 1.09008 * 109.46641 * 59.99898 * 1 2 3 28 28 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47371 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47114 * 299.99832 * 3 2 1 31 31 H 1.08998 * 109.47012 * 59.99397 * 3 2 1 32 32 H 0.97007 * 119.99442 * 180.02562 * 7 6 4 33 33 H 1.09009 * 109.46641 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47327 * 60.00523 * 12 2 1 35 35 H 0.97001 * 119.99942 * 244.99793 * 16 13 12 36 36 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 37 37 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 38 38 H 1.09005 * 109.46935 * 90.24050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5205 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0528 -0.7409 3.9937 17 6 3.5008 -0.7933 4.2096 18 6 3.7836 -1.3168 5.5943 19 7 3.9452 -2.5723 5.9366 20 6 4.1746 -2.5594 7.2618 21 6 4.4270 -3.7615 8.1349 22 9 3.9538 -3.5073 9.4266 23 9 3.7608 -4.8714 7.6042 24 7 4.1338 -1.3206 7.6518 25 8 3.9103 -0.5908 6.7090 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.7083 1.1607 -3.4845 33 1 3.1300 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 1.4555 -1.2151 4.5930 36 1 3.9545 -1.4547 3.4715 37 1 3.9200 0.2076 4.1070 38 1 5.4973 -3.9643 8.1734 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365420778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:39 Heat of formation + Delta-G solvation = -120.031356 kcal Electronic energy + Delta-G solvation = -27496.986705 eV Core-core repulsion = 22947.562215 eV Total energy + Delta-G solvation = -4549.424489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.29290 -48.32324 -47.07927 -38.17652 -38.06986 -37.60551 -36.95975 -36.72060 -33.69069 -33.57296 -29.16655 -28.39230 -28.13877 -27.61713 -27.18454 -24.96963 -23.14819 -21.39853 -20.46758 -19.70378 -19.66692 -18.81635 -18.50634 -18.33817 -17.85029 -17.72591 -17.47576 -16.93655 -16.60314 -16.13174 -15.66854 -15.16429 -15.08803 -14.67776 -14.63512 -14.58401 -14.35911 -14.29521 -13.87795 -13.76666 -13.49886 -13.31411 -13.03153 -12.93280 -12.82794 -12.76025 -12.70861 -12.52753 -12.42921 -12.14566 -12.11727 -11.91776 -11.58000 -11.48969 -11.34972 -10.80171 -10.44770 -10.35778 -7.98465 -6.16512 -0.76410 -0.28990 0.59795 1.35157 1.49034 1.50435 1.56386 1.64489 1.88336 2.32124 2.48252 2.82276 2.85410 3.18692 3.24551 3.33880 3.60675 3.77043 3.84447 4.05956 4.21069 4.22351 4.36875 4.45864 4.49701 4.67724 4.93489 4.94700 5.07009 5.15935 5.47188 5.57558 5.70817 5.80210 6.05478 6.18831 6.39818 6.63249 6.89294 7.52159 9.00828 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.020568 B = 0.002612 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.021097 B =10718.880114 C =11390.021624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 C -0.162 4.162 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.292 1.292 11 H -0.270 1.270 12 C -0.584 4.584 13 S 2.617 3.383 14 O -0.988 6.988 15 O -0.978 6.978 16 N -1.117 6.117 17 C 0.200 3.800 18 C 0.198 3.802 19 N -0.453 5.453 20 C 0.083 3.917 21 C 0.376 3.624 22 F -0.191 7.191 23 F -0.186 7.186 24 N -0.357 5.357 25 O 0.103 5.897 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.424 0.576 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 -7.691 18.039 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 C -0.220 4.220 4 C -0.554 4.554 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.218 1.218 11 H -0.195 1.195 12 C -0.718 4.718 13 S 2.715 3.285 14 O -0.978 6.978 15 O -0.967 6.967 16 N -0.878 5.878 17 C 0.073 3.927 18 C -0.024 4.024 19 N -0.187 5.187 20 C -0.191 4.191 21 C 0.322 3.678 22 F -0.172 7.172 23 F -0.167 7.167 24 N -0.059 5.059 25 O 0.037 5.963 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.260 0.740 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.858 -6.951 18.739 22.286 hybrid contribution -0.232 -0.824 -1.069 1.370 sum 9.626 -7.775 17.670 21.572 Atomic orbital electron populations 1.22249 0.98151 1.00451 1.01322 1.17915 0.92063 0.92362 0.90948 1.22225 1.00279 0.98107 1.01389 1.21311 1.31524 1.12308 0.90283 0.91432 1.25645 0.95277 0.95626 1.01622 1.69947 1.37245 1.23775 1.23754 0.85728 0.78867 0.78648 0.79039 1.19930 1.21825 1.19492 1.30469 1.13523 1.13464 1.14307 1.04832 0.73567 0.74624 0.75496 1.93538 1.31292 1.86868 1.86095 1.93531 1.78255 1.39184 1.85777 1.55579 1.13441 1.71267 1.47494 1.20257 0.81656 1.06309 0.84469 1.28992 0.95343 0.84611 0.93474 1.71921 1.17896 1.19313 1.09563 1.26946 1.05087 0.95576 0.91538 1.19811 0.98594 0.76275 0.73169 1.93064 1.91215 1.94191 1.38779 1.93077 1.84021 1.53183 1.86382 1.74707 1.17204 1.03444 1.10593 1.85387 1.62173 1.35449 1.13274 0.94797 0.91304 0.94202 0.93367 0.91482 0.94579 0.93093 0.82935 0.84013 0.74048 0.83097 0.84065 0.78729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 7.77 71.98 0.56 -7.11 16 2 C 0.07 3.04 0.52 -52.93 -0.03 3.01 16 3 C -0.16 -7.33 7.77 71.98 0.56 -6.77 16 4 C -0.52 -24.95 8.01 25.60 0.21 -24.75 16 5 H 0.07 3.08 7.74 -2.91 -0.02 3.06 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -48.61 9.35 21.45 0.20 -48.41 16 8 Si 0.95 40.45 29.54 68.60 2.03 42.47 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 C -0.58 -18.34 5.02 71.98 0.36 -17.98 16 13 S 2.62 78.85 4.49 -56.49 -0.25 78.60 16 14 O -0.99 -36.83 15.70 -127.65 -2.00 -38.84 16 15 O -0.98 -33.67 15.11 -127.65 -1.93 -35.59 16 16 N -1.12 -22.21 5.88 -190.79 -1.12 -23.33 16 17 C 0.20 2.85 6.76 85.63 0.58 3.43 16 18 C 0.20 3.38 7.91 88.38 0.70 4.08 16 19 N -0.45 -8.65 11.51 -303.21 -3.49 -12.14 16 20 C 0.08 1.53 7.71 138.46 1.07 2.60 16 21 C 0.38 4.92 5.86 71.23 0.42 5.34 16 22 F -0.19 -3.21 17.28 44.97 0.78 -2.43 16 23 F -0.19 -3.16 17.29 44.97 0.78 -2.38 16 24 N -0.36 -7.39 12.10 -60.33 -0.73 -8.12 16 25 O 0.10 1.99 11.31 74.86 0.85 2.83 16 26 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 27 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 31 H 0.04 1.53 5.46 -2.39 -0.01 1.52 16 32 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 33 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.42 7.75 8.61 -96.74 -0.83 6.92 16 36 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 1.60 7.68 -2.39 -0.02 1.58 16 38 H 0.20 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -69.94 337.62 0.26 -69.68 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.31 Total: 14.47 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.86 Total: -36.81 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -5.14 Total: -92.00 kcal Atomic # 8 Polarization: -68.51 SS G_CDS: -3.09 Total: -71.60 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.55 Total: -4.81 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 78.85 SS G_CDS: -0.25 Total: 78.60 kcal Total: -69.94 0.26 -69.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365420778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.350 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds