Wall clock time and date at job start Tue Mar 31 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53043 * 113.15228 * 275.37368 * 20 19 17 22 22 S 1.81422 * 89.89378 * 211.85390 * 21 20 19 23 23 O 1.42098 * 112.75692 * 280.47616 * 22 21 20 24 24 O 1.42104 * 112.75848 * 136.72673 * 22 21 20 25 25 C 1.53048 * 113.15223 * 175.00348 * 20 19 17 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 35 35 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 36 36 H 1.09001 * 112.50151 * 45.21385 * 20 19 17 37 37 H 1.09005 * 113.14930 * 327.10986 * 21 20 19 38 38 H 1.08997 * 113.15095 * 96.59472 * 21 20 19 39 39 H 1.09004 * 113.14638 * 263.40521 * 25 20 19 40 40 H 1.09000 * 113.14846 * 32.88518 * 25 20 19 41 41 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2672 -10.9224 -2.2324 21 6 0.7066 -12.0787 -1.9941 22 16 -0.4035 -13.1949 -2.8958 23 8 -1.4985 -13.6376 -2.1057 24 8 0.2895 -14.0567 -3.7883 25 6 -0.6579 -11.5339 -3.5798 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 -0.1994 -8.8900 -2.9444 35 1 1.3848 -9.6986 -2.8749 36 1 -1.0897 -10.8997 -1.5174 37 1 1.6677 -11.9385 -2.4889 38 1 0.8132 -12.3391 -0.9410 39 1 -1.6943 -11.3379 -3.8550 40 1 0.0401 -11.2886 -4.3803 41 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411968976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:00 Heat of formation + Delta-G solvation = -89.262360 kcal Electronic energy + Delta-G solvation = -25516.824828 eV Core-core repulsion = 21490.671361 eV Total energy + Delta-G solvation = -4026.153467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.07356 -39.15077 -37.79698 -37.33521 -36.75086 -36.37875 -34.57402 -32.39636 -31.22605 -29.64118 -28.99627 -27.08561 -25.92369 -25.09060 -21.89978 -21.70026 -20.88155 -20.35347 -19.23058 -18.08471 -17.42372 -17.02318 -16.84565 -16.74103 -16.44674 -15.79854 -15.69008 -15.21582 -15.02372 -14.54833 -14.43728 -13.93303 -13.72350 -13.56988 -13.48028 -13.34863 -13.03034 -12.66293 -12.62996 -12.59878 -12.47838 -12.16325 -11.76333 -11.73344 -11.55829 -11.45165 -11.03209 -10.98788 -10.88696 -10.76456 -10.71515 -10.50945 -9.98768 -9.47092 -9.09202 -8.95093 -8.31679 -7.39929 -6.54834 -4.14432 -0.24984 1.59139 1.82582 2.19564 2.53919 3.04676 3.07356 3.12884 3.17869 3.29715 3.59449 3.79112 3.87576 4.19691 4.41527 4.48523 4.65816 4.71395 4.82235 4.92923 4.98621 5.01604 5.15072 5.19663 5.21812 5.39520 5.47196 5.63686 5.66764 5.77088 5.84398 6.00840 6.18035 6.37280 6.48299 6.74400 6.93191 7.11043 7.20439 7.29148 7.45324 7.64279 7.89276 8.13087 8.90613 9.58550 10.62870 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.001745 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.543609 B =16037.504306 C =16502.113919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.196 4.196 14 C -0.074 4.074 15 C 0.167 3.833 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.544 6.544 19 C -0.120 4.120 20 C -0.052 4.052 21 C -0.594 4.594 22 S 2.406 3.594 23 O -0.913 6.913 24 O -0.930 6.930 25 C -0.601 4.601 26 C -0.172 4.172 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -19.679 -7.312 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.074 4.074 15 C 0.045 3.955 16 N -0.372 5.372 17 C 0.296 3.704 18 O -0.421 6.421 19 C -0.161 4.161 20 C -0.073 4.073 21 C -0.723 4.723 22 S 2.588 3.412 23 O -0.911 6.911 24 O -0.927 6.927 25 C -0.729 4.729 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.655 -21.070 -6.708 22.174 hybrid contribution 1.082 2.440 -0.244 2.680 sum 2.737 -18.630 -6.951 20.072 Atomic orbital electron populations 1.70046 1.05979 1.27720 1.45707 1.25314 0.95870 0.98908 0.96426 0.85631 0.79114 0.80258 0.78334 1.19079 1.20099 1.20067 1.21376 0.91832 0.80718 1.53033 0.88954 1.83981 1.34313 1.11422 1.78186 1.19329 0.90271 0.88084 0.92692 1.21254 0.93842 0.99141 1.10215 1.20750 0.98596 0.92262 0.97809 1.20469 0.93327 0.97104 1.10635 1.19259 0.93484 0.92819 1.01868 1.20160 1.00122 0.91427 0.83840 1.46160 1.60693 1.20357 1.09961 1.20558 0.77467 0.81032 0.91387 1.90702 1.51019 1.60353 1.40064 1.21507 1.02914 0.96087 0.95631 1.21215 0.97938 0.93949 0.94166 1.31029 1.13275 1.12555 1.15485 1.08467 0.77821 0.76674 0.78189 1.93730 1.49600 1.80309 1.67425 1.93642 1.72634 1.64433 1.61992 1.31072 1.11034 1.24031 1.06800 1.20082 0.99421 0.89852 1.09821 0.91953 0.85435 0.87267 0.87546 0.90947 0.90808 0.76144 0.87659 0.88075 0.85788 0.83986 0.85148 0.85454 0.83722 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.55 9.49 30.89 0.29 -10.25 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.18 -4.78 9.76 0.05 0.00 -4.78 16 10 C 0.15 3.39 6.65 -39.11 -0.26 3.13 16 11 C -0.22 -4.54 9.17 -39.39 -0.36 -4.90 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.20 -3.02 9.70 -39.54 -0.38 -3.41 16 14 C -0.07 -1.17 5.25 -104.65 -0.55 -1.72 16 15 C 0.17 2.26 5.80 -5.19 -0.03 2.23 16 16 N -0.72 -8.09 5.55 -61.47 -0.34 -8.44 16 17 C 0.51 5.63 7.83 -10.98 -0.09 5.55 16 18 O -0.54 -7.95 15.78 5.56 0.09 -7.87 16 19 C -0.12 -0.81 5.48 -27.89 -0.15 -0.96 16 20 C -0.05 -0.34 2.80 -90.58 -0.25 -0.59 16 21 C -0.59 -3.30 7.48 37.18 0.28 -3.02 16 22 S 2.41 14.06 7.55 -107.50 -0.81 13.25 16 23 O -0.91 -8.87 18.18 -57.30 -1.04 -9.92 16 24 O -0.93 -8.38 18.18 -57.30 -1.04 -9.43 16 25 C -0.60 -2.37 7.49 37.18 0.28 -2.09 16 26 C -0.17 -3.32 9.65 -39.40 -0.38 -3.70 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 29 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.40 3.89 8.46 -40.82 -0.35 3.55 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.46 7.89 -51.93 -0.41 0.05 16 36 H 0.12 0.96 7.71 -51.93 -0.40 0.56 16 37 H 0.14 0.53 7.94 -51.93 -0.41 0.12 16 38 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.14 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -36.78 365.89 -9.07 -45.85 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.07 Total: 5.19 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.10 Total: -20.45 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.42 Total: -32.15 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -2.00 Total: -31.99 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 14.06 SS G_CDS: -0.81 Total: 13.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.78 -9.07 -45.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411968976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.410 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds