Wall clock time and date at job start Tue Mar 31 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53043 * 113.15228 * 275.37368 * 20 19 17 22 22 S 1.81422 * 89.89378 * 211.85390 * 21 20 19 23 23 O 1.42098 * 112.75692 * 280.47616 * 22 21 20 24 24 O 1.42104 * 112.75848 * 136.72673 * 22 21 20 25 25 C 1.53048 * 113.15223 * 175.00348 * 20 19 17 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 35 35 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 36 36 H 1.09001 * 112.50151 * 45.21385 * 20 19 17 37 37 H 1.09005 * 113.14930 * 327.10986 * 21 20 19 38 38 H 1.08997 * 113.15095 * 96.59472 * 21 20 19 39 39 H 1.09004 * 113.14638 * 263.40521 * 25 20 19 40 40 H 1.09000 * 113.14846 * 32.88518 * 25 20 19 41 41 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2672 -10.9224 -2.2324 21 6 0.7066 -12.0787 -1.9941 22 16 -0.4035 -13.1949 -2.8958 23 8 -1.4985 -13.6376 -2.1057 24 8 0.2895 -14.0567 -3.7883 25 6 -0.6579 -11.5339 -3.5798 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 -0.1994 -8.8900 -2.9444 35 1 1.3848 -9.6986 -2.8749 36 1 -1.0897 -10.8997 -1.5174 37 1 1.6677 -11.9385 -2.4889 38 1 0.8132 -12.3391 -0.9410 39 1 -1.6943 -11.3379 -3.8550 40 1 0.0401 -11.2886 -4.3803 41 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411968976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:59 Heat of formation + Delta-G solvation = -118.173542 kcal Electronic energy + Delta-G solvation = -25518.078511 eV Core-core repulsion = 21490.671361 eV Total energy + Delta-G solvation = -4027.407150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09291 -40.59340 -38.60750 -38.32025 -37.71640 -36.98505 -35.69816 -34.28883 -32.43656 -30.91170 -30.05911 -27.51984 -27.47585 -26.57214 -23.28145 -22.69103 -22.19137 -21.10584 -19.75336 -19.60775 -18.92541 -18.07149 -17.52780 -17.30687 -17.02076 -16.85174 -16.66736 -16.50354 -16.26421 -16.06771 -15.55812 -15.47194 -15.08552 -14.48934 -14.36559 -14.07651 -13.89796 -13.88731 -13.75521 -13.48689 -13.26568 -13.23160 -13.07172 -13.03130 -12.56476 -12.36384 -12.27899 -12.23577 -12.09058 -12.04539 -11.52054 -11.21823 -11.16242 -10.93554 -10.80662 -10.08308 -9.74927 -9.03547 -8.47753 -6.16061 -0.72886 0.38975 0.70274 1.16348 1.35863 1.43454 1.53702 1.69850 2.16776 2.29306 2.81496 2.85952 3.12871 3.15675 3.30616 3.41132 3.68276 3.82481 3.98363 4.08449 4.10737 4.30248 4.34807 4.40616 4.43109 4.52958 4.59700 4.69664 4.73668 4.77719 4.82239 4.99248 5.01890 5.11852 5.18443 5.25674 5.41994 5.62404 5.70573 5.71800 6.01377 6.16666 6.59557 6.97389 7.28165 7.77658 8.75460 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026723 B = 0.001745 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.543609 B =16037.504306 C =16502.113919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.235 4.235 12 C -0.070 4.070 13 C -0.168 4.168 14 C -0.057 4.057 15 C 0.173 3.827 16 N -0.717 5.717 17 C 0.506 3.494 18 O -0.584 6.584 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.589 4.589 22 S 2.419 3.581 23 O -0.960 6.960 24 O -0.963 6.963 25 C -0.570 4.570 26 C -0.182 4.182 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.414 0.586 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.119 0.881 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -20.801 -8.655 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.061 3.939 11 C -0.254 4.254 12 C -0.088 4.088 13 C -0.187 4.187 14 C -0.058 4.058 15 C 0.049 3.951 16 N -0.369 5.369 17 C 0.294 3.706 18 O -0.464 6.464 19 C -0.155 4.155 20 C -0.088 4.088 21 C -0.719 4.719 22 S 2.605 3.395 23 O -0.958 6.958 24 O -0.960 6.960 25 C -0.701 4.701 26 C -0.202 4.202 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.186 0.814 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.193 0.807 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.651 -22.282 -8.066 24.149 hybrid contribution 0.283 2.467 0.220 2.493 sum 4.934 -19.815 -7.846 21.875 Atomic orbital electron populations 1.70191 1.08028 1.28705 1.48948 1.26584 0.96839 1.02777 0.95968 0.84529 0.78342 0.74909 0.78449 1.17286 1.19412 1.19632 1.21854 0.92539 0.81340 1.52991 0.87893 1.83946 1.35960 1.12568 1.81421 1.19877 0.91659 0.87869 0.94461 1.21374 0.93008 1.00430 1.10603 1.21166 1.00419 0.91176 0.96008 1.20991 0.93063 0.98211 1.06446 1.19461 0.93938 0.92615 0.99792 1.19995 0.99451 0.90255 0.85385 1.46074 1.60895 1.20644 1.09263 1.21358 0.76125 0.80323 0.92752 1.90697 1.52476 1.61340 1.41911 1.21614 1.05074 0.95870 0.92976 1.21263 0.97837 0.94402 0.95317 1.31086 1.14286 1.11367 1.15134 1.07874 0.76861 0.77161 0.77567 1.93664 1.51444 1.81823 1.68833 1.93592 1.73223 1.66395 1.62832 1.30905 1.13021 1.19911 1.06244 1.20224 0.99401 0.90184 1.10419 0.91895 0.86283 0.83413 0.83373 0.89706 0.92239 0.74959 0.85565 0.84701 0.87752 0.81443 0.86186 0.83864 0.80694 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.67 21.61 0.30 -55.03 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 41.54 29.55 68.60 2.03 43.56 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.41 -23.05 9.49 67.92 0.64 -22.40 16 8 H 0.10 5.25 5.21 -2.91 -0.02 5.24 16 9 O -0.23 -13.41 9.76 -22.74 -0.22 -13.63 16 10 C 0.11 5.19 6.65 22.58 0.15 5.34 16 11 C -0.23 -9.32 9.17 22.39 0.21 -9.11 16 12 C -0.07 -2.07 10.04 22.25 0.22 -1.85 16 13 C -0.17 -4.42 9.70 22.30 0.22 -4.20 16 14 C -0.06 -1.69 5.25 -19.88 -0.10 -1.79 16 15 C 0.17 4.27 5.80 85.63 0.50 4.76 16 16 N -0.72 -14.03 5.55 -466.79 -2.59 -16.62 16 17 C 0.51 9.87 7.83 87.66 0.69 10.56 16 18 O -0.58 -16.34 15.78 -3.03 -0.05 -16.39 16 19 C -0.11 -1.08 5.48 29.85 0.16 -0.92 16 20 C -0.07 -0.70 2.80 -10.77 -0.03 -0.73 16 21 C -0.59 -5.21 7.48 72.00 0.54 -4.68 16 22 S 2.42 25.81 7.55 -56.49 -0.43 25.39 16 23 O -0.96 -19.13 18.18 -127.88 -2.32 -21.45 16 24 O -0.96 -16.46 18.18 -127.88 -2.32 -18.78 16 25 C -0.57 -2.52 7.49 72.00 0.54 -1.98 16 26 C -0.18 -7.13 9.65 22.39 0.22 -6.92 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.12 4.86 5.64 -2.91 -0.02 4.84 16 29 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 32 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.41 6.52 8.46 -92.71 -0.78 5.74 16 34 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.14 0.43 7.89 -2.38 -0.02 0.41 16 36 H 0.10 1.53 7.71 -2.39 -0.02 1.51 16 37 H 0.17 0.60 7.94 -2.38 -0.02 0.58 16 38 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.18 -0.17 8.12 -2.39 -0.02 -0.19 16 41 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -86.64 365.89 -0.91 -87.55 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.29 Total: 20.20 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.41 Total: -34.79 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -2.29 Total: -71.64 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -4.92 Total: -70.26 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 25.81 SS G_CDS: -0.43 Total: 25.39 kcal Total: -86.64 -0.91 -87.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411968976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.627 kcal (2) G-P(sol) polarization free energy of solvation -86.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds