Wall clock time and date at job start Tue Mar 31 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99612 * 180.02562 * 17 16 15 20 20 S 1.81411 * 109.46927 * 179.97438 * 19 17 16 21 21 O 1.42101 * 108.57391 * 294.48792 * 20 19 17 22 22 O 1.42101 * 108.57592 * 65.51011 * 20 19 17 23 23 C 1.81399 * 101.92011 * 179.97438 * 20 19 17 24 24 C 1.52998 * 117.49638 * 253.74487 * 23 20 19 25 25 C 1.52999 * 117.49505 * 185.08994 * 23 20 19 26 26 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09006 * 109.47274 * 299.99745 * 19 17 16 35 35 H 1.08999 * 109.47493 * 59.99971 * 19 17 16 36 36 H 1.08995 * 115.55297 * 39.41735 * 23 20 19 37 37 H 1.08998 * 117.50193 * 0.02562 * 24 23 20 38 38 H 1.09004 * 117.50109 * 145.02207 * 24 23 20 39 39 H 1.09000 * 117.49786 * 214.98054 * 25 23 20 40 40 H 1.09001 * 117.49943 * 359.97438 * 25 23 20 41 41 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0067 19 6 10.0443 -4.0188 2.3635 20 16 11.8491 -4.1080 2.2038 21 8 12.1868 -5.3291 1.5602 22 8 12.3163 -2.8827 1.6563 23 6 12.3744 -4.2031 3.9375 24 6 13.0108 -2.9549 4.5523 25 6 13.8773 -4.1729 4.2229 26 6 5.3550 -2.4724 -0.2267 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2703 -5.7081 -0.1879 30 1 5.7198 -5.8205 -0.4034 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.5192 -3.8578 1.6545 34 1 9.7736 -3.1354 2.9420 35 1 9.6803 -4.9116 2.8720 36 1 11.7516 -4.8210 4.5842 37 1 13.1134 -2.0765 3.9152 38 1 12.8069 -2.7518 5.6036 39 1 14.2431 -4.7708 5.0576 40 1 14.5503 -4.0964 3.3689 41 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417641910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:11 Heat of formation + Delta-G solvation = -73.614632 kcal Electronic energy + Delta-G solvation = -25777.002781 eV Core-core repulsion = 21751.527851 eV Total energy + Delta-G solvation = -4025.474930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -40.09329 -39.26726 -37.70753 -37.11940 -37.08746 -36.24241 -34.82806 -32.50232 -31.74202 -30.26830 -29.39399 -25.98546 -25.13346 -24.06765 -23.17359 -21.93848 -21.04158 -20.83726 -19.12658 -18.15126 -17.93006 -17.68484 -16.91068 -16.69969 -16.53261 -15.75773 -15.52952 -15.35018 -15.25673 -14.90473 -14.24420 -14.07413 -13.94453 -13.83111 -13.51790 -13.33796 -12.69632 -12.65778 -12.45567 -12.29877 -12.26491 -12.14934 -12.09998 -11.70844 -11.65322 -11.57164 -11.40251 -11.02786 -10.95816 -10.89850 -10.82952 -10.47411 -10.25498 -9.52785 -9.30394 -8.98229 -8.42817 -7.55889 -6.51513 -4.19153 -0.47129 1.69843 2.06951 2.19664 2.31099 2.63011 2.87713 3.15461 3.19967 3.32995 3.44016 3.73221 3.98221 4.11293 4.15044 4.17198 4.25626 4.38519 4.56840 4.57775 4.73349 4.92475 4.96437 4.97964 5.02749 5.21536 5.32628 5.36893 5.54356 5.66853 5.72746 5.93217 6.06786 6.14815 6.33554 6.59422 6.91175 7.02183 7.12344 7.15254 7.42663 7.66791 7.80111 7.91657 8.83093 9.43278 10.55731 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.002164 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.524550 B =12937.244367 C =13888.647166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.156 3.844 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.078 4.078 15 C 0.163 3.837 16 N -0.707 5.707 17 C 0.539 3.461 18 O -0.533 6.533 19 C -0.657 4.657 20 S 2.482 3.518 21 O -0.917 6.917 22 O -0.917 6.917 23 C -0.683 4.683 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.171 4.171 27 H 0.281 0.719 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.408 0.592 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.548 -8.925 11.058 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.468 4.468 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.104 3.896 11 C -0.230 4.230 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.078 4.078 15 C 0.041 3.959 16 N -0.358 5.358 17 C 0.322 3.678 18 O -0.411 6.411 19 C -0.784 4.784 20 S 2.658 3.342 21 O -0.914 6.914 22 O -0.914 6.914 23 C -0.790 4.790 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.243 0.757 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.390 -8.544 9.604 25.818 hybrid contribution -1.151 0.458 1.322 1.811 sum 21.239 -8.087 10.926 25.217 Atomic orbital electron populations 1.69642 1.05587 1.28651 1.47452 1.24481 0.95046 0.98916 0.95511 0.86172 0.80262 0.81327 0.79088 1.19781 1.20710 1.18382 1.20759 0.76739 0.96675 1.52578 0.87574 1.83575 1.22731 1.25536 1.80091 1.19056 0.91540 0.85667 0.93377 1.21385 1.01367 0.91908 1.08335 1.20814 0.94132 0.96891 0.97698 1.20565 0.93909 0.96739 1.09351 1.19222 0.93110 0.93101 1.02391 1.20303 0.89132 1.03217 0.83261 1.45996 1.05780 1.73438 1.10544 1.19103 0.83404 0.76993 0.88254 1.90868 1.61043 1.50237 1.38957 1.30822 1.28889 1.13669 1.05066 1.06443 0.76407 0.75643 0.75716 1.93585 1.80783 1.46327 1.70718 1.93581 1.77639 1.45940 1.74254 1.32370 1.07664 1.13525 1.25487 1.22958 0.99621 0.90908 1.03066 1.22806 0.87571 1.01183 1.04587 1.20092 0.92042 0.97230 1.09759 0.90919 0.84769 0.86888 0.87185 0.90208 0.90206 0.75719 0.81983 0.82224 0.82277 0.85987 0.86797 0.86631 0.87215 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 13.96 55.48 0.77 -23.78 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -10.60 9.95 30.89 0.31 -10.29 16 8 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 9 O -0.21 -5.38 8.59 0.05 0.00 -5.38 16 10 C 0.16 3.35 6.65 -39.11 -0.26 3.09 16 11 C -0.21 -4.19 9.17 -39.40 -0.36 -4.55 16 12 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 13 C -0.19 -2.77 9.70 -39.54 -0.38 -3.16 16 14 C -0.08 -1.18 5.25 -104.65 -0.55 -1.73 16 15 C 0.16 2.17 5.80 -5.19 -0.03 2.14 16 16 N -0.71 -8.10 5.55 -61.47 -0.34 -8.44 16 17 C 0.54 6.68 7.85 -10.99 -0.09 6.59 16 18 O -0.53 -8.89 15.62 2.55 0.04 -8.85 16 19 C -0.66 -4.76 6.29 36.00 0.23 -4.54 16 20 S 2.48 23.81 4.35 -107.50 -0.47 23.35 16 21 O -0.92 -12.41 17.95 -59.52 -1.07 -13.47 16 22 O -0.92 -12.00 17.09 -59.53 -1.02 -13.01 16 23 C -0.68 -3.62 6.26 -26.73 -0.17 -3.78 16 24 C -0.13 -0.59 10.12 -26.70 -0.27 -0.86 16 25 C -0.12 -0.62 10.30 -26.70 -0.27 -0.89 16 26 C -0.17 -3.10 9.65 -39.39 -0.38 -3.48 16 27 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.41 3.75 8.46 -40.82 -0.35 3.41 16 34 H 0.16 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.16 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.16 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.62 7.57 -51.93 -0.39 0.22 16 38 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -36.50 370.17 -9.19 -45.68 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.10 Total: 3.65 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.72 Total: -21.48 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.43 Total: -32.22 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -2.05 Total: -40.71 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal Atomic # 16 Polarization: 23.81 SS G_CDS: -0.47 Total: 23.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.50 -9.19 -45.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417641910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.930 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds