Wall clock time and date at job start Tue Mar 31 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93241 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56847 * 12 11 10 14 14 C 1.38274 * 120.13742 * 359.68073 * 13 12 11 15 15 C 1.50705 * 119.96893 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99612 * 180.02562 * 17 16 15 20 20 S 1.81411 * 109.46927 * 179.97438 * 19 17 16 21 21 O 1.42101 * 108.57391 * 294.48792 * 20 19 17 22 22 O 1.42101 * 108.57592 * 65.51011 * 20 19 17 23 23 C 1.81399 * 101.92011 * 179.97438 * 20 19 17 24 24 C 1.52998 * 117.49638 * 253.74487 * 23 20 19 25 25 C 1.52999 * 117.49505 * 185.08994 * 23 20 19 26 26 C 1.38123 * 120.07195 * 0.04687 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.96946 * 180.27290 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 32 32 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 1.09006 * 109.47274 * 299.99745 * 19 17 16 35 35 H 1.08999 * 109.47493 * 59.99971 * 19 17 16 36 36 H 1.08995 * 115.55297 * 39.41735 * 23 20 19 37 37 H 1.08998 * 117.50193 * 0.02562 * 24 23 20 38 38 H 1.09004 * 117.50109 * 145.02207 * 24 23 20 39 39 H 1.09000 * 117.49786 * 214.98054 * 25 23 20 40 40 H 1.09001 * 117.49943 * 359.97438 * 25 23 20 41 41 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8530 -4.7989 -0.1986 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0067 19 6 10.0443 -4.0188 2.3635 20 16 11.8491 -4.1080 2.2038 21 8 12.1868 -5.3291 1.5602 22 8 12.3163 -2.8827 1.6563 23 6 12.3744 -4.2031 3.9375 24 6 13.0108 -2.9549 4.5523 25 6 13.8773 -4.1729 4.2229 26 6 5.3550 -2.4724 -0.2267 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2703 -5.7081 -0.1879 30 1 5.7198 -5.8205 -0.4034 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.5192 -3.8578 1.6545 34 1 9.7736 -3.1354 2.9420 35 1 9.6803 -4.9116 2.8720 36 1 11.7516 -4.8210 4.5842 37 1 13.1134 -2.0765 3.9152 38 1 12.8069 -2.7518 5.6036 39 1 14.2431 -4.7708 5.0576 40 1 14.5503 -4.0964 3.3689 41 1 5.9409 -1.5652 -0.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417641910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:10 Heat of formation + Delta-G solvation = -101.924766 kcal Electronic energy + Delta-G solvation = -25778.230401 eV Core-core repulsion = 21751.527851 eV Total energy + Delta-G solvation = -4026.702550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23653 -40.71752 -38.63831 -38.27694 -37.74082 -37.05027 -35.98267 -34.46678 -32.81960 -31.39252 -30.77403 -27.46657 -26.73583 -24.59654 -23.49814 -23.36407 -22.37754 -21.96968 -19.86527 -19.71620 -19.19268 -18.63120 -18.05834 -17.54027 -17.31915 -16.89303 -16.75704 -16.36442 -16.27744 -15.91392 -15.76226 -15.65816 -15.12825 -14.77919 -14.56638 -14.45786 -14.24986 -13.91892 -13.87741 -13.34622 -13.22505 -13.13635 -13.11102 -12.64033 -12.54130 -12.48964 -12.41843 -12.23113 -12.01645 -11.98632 -11.95459 -11.57947 -11.37128 -11.30864 -10.92821 -10.32188 -9.83091 -9.15055 -8.51147 -6.23986 -1.13547 0.30857 0.62096 1.28847 1.31513 1.34801 1.50840 1.72344 1.91971 2.24984 2.26514 2.70872 2.83593 2.95694 3.12268 3.16429 3.47637 3.55239 3.70602 3.73884 3.95441 4.02468 4.05102 4.23581 4.27150 4.37645 4.46720 4.61437 4.63175 4.67955 4.71177 4.89397 4.92175 5.07098 5.15181 5.17346 5.35514 5.59855 5.66171 5.73115 5.87198 6.16140 6.24052 6.83297 6.92011 7.56683 8.60107 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.002164 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.524550 B =12937.244367 C =13888.647166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.244 6.244 10 C 0.119 3.881 11 C -0.226 4.226 12 C -0.073 4.073 13 C -0.158 4.158 14 C -0.062 4.062 15 C 0.165 3.835 16 N -0.698 5.698 17 C 0.528 3.472 18 O -0.584 6.584 19 C -0.642 4.642 20 S 2.462 3.538 21 O -0.973 6.973 22 O -0.970 6.970 23 C -0.659 4.659 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.170 4.170 27 H 0.284 0.716 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.421 0.579 34 H 0.202 0.798 35 H 0.207 0.793 36 H 0.200 0.800 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.477 -10.486 13.457 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.102 0.898 9 O -0.152 6.152 10 C 0.070 3.930 11 C -0.245 4.245 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.062 4.062 15 C 0.042 3.958 16 N -0.349 5.349 17 C 0.314 3.686 18 O -0.465 6.465 19 C -0.771 4.771 20 S 2.647 3.353 21 O -0.970 6.970 22 O -0.967 6.967 23 C -0.770 4.770 24 C -0.163 4.163 25 C -0.177 4.177 26 C -0.189 4.189 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.259 0.741 34 H 0.220 0.780 35 H 0.224 0.776 36 H 0.217 0.783 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.117 0.883 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 24.344 -10.144 11.974 28.963 hybrid contribution -1.538 0.630 0.611 1.771 sum 22.805 -9.513 12.585 27.730 Atomic orbital electron populations 1.69723 1.06854 1.29582 1.50022 1.25256 0.95858 1.02097 0.95610 0.85246 0.78875 0.77628 0.79151 1.19437 1.19271 1.18570 1.20696 0.78000 0.96126 1.52595 0.89847 1.83521 1.21284 1.27374 1.83013 1.19572 0.92919 0.85259 0.95234 1.21417 1.00476 0.93254 1.09396 1.21149 0.95168 0.96451 0.96328 1.21048 0.93179 0.98212 1.05244 1.19393 0.94253 0.92113 1.00479 1.20196 0.87449 1.03558 0.84563 1.45853 1.05854 1.72965 1.10278 1.19871 0.83223 0.75769 0.89695 1.90862 1.62097 1.52302 1.41235 1.30718 1.25789 1.17880 1.02735 1.06424 0.77474 0.73752 0.77675 1.93521 1.82163 1.47590 1.73699 1.93519 1.79112 1.47179 1.76933 1.32012 1.08514 1.15172 1.21321 1.23167 0.98556 0.90195 1.04352 1.23091 0.87303 1.02102 1.05175 1.20283 0.90645 0.98855 1.09144 0.90585 0.87149 0.83752 0.83214 0.89163 0.90909 0.74093 0.78030 0.77583 0.78307 0.87100 0.83857 0.84098 0.88339 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.96 21.61 0.30 -53.46 16 2 C 0.01 0.59 5.49 84.83 0.47 1.06 16 3 Si 0.97 44.39 28.62 68.60 1.96 46.35 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.40 -22.58 9.95 67.92 0.68 -21.91 16 8 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.67 8.59 -22.74 -0.20 -12.87 16 10 C 0.12 5.18 6.65 22.58 0.15 5.33 16 11 C -0.23 -9.05 9.17 22.39 0.21 -8.85 16 12 C -0.07 -2.18 10.04 22.25 0.22 -1.96 16 13 C -0.16 -4.01 9.70 22.30 0.22 -3.79 16 14 C -0.06 -1.68 5.25 -19.88 -0.10 -1.79 16 15 C 0.17 3.91 5.80 85.64 0.50 4.40 16 16 N -0.70 -13.59 5.55 -466.78 -2.59 -16.18 16 17 C 0.53 11.80 7.85 87.66 0.69 12.49 16 18 O -0.58 -19.19 15.62 -0.15 0.00 -19.19 16 19 C -0.64 -6.87 6.29 71.24 0.45 -6.42 16 20 S 2.46 44.37 4.35 -56.49 -0.25 44.13 16 21 O -0.97 -26.50 17.95 -125.76 -2.26 -28.76 16 22 O -0.97 -26.00 17.09 -125.74 -2.15 -28.15 16 23 C -0.66 -4.63 6.26 30.59 0.19 -4.44 16 24 C -0.12 -0.75 10.12 30.62 0.31 -0.44 16 25 C -0.14 -1.03 10.30 30.62 0.32 -0.72 16 26 C -0.17 -5.93 9.65 22.39 0.22 -5.71 16 27 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.11 4.93 5.64 -2.91 -0.02 4.91 16 29 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.09 2.02 8.09 -2.38 -0.02 2.00 16 32 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 33 H 0.42 5.89 8.46 -92.71 -0.78 5.10 16 34 H 0.20 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.21 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.20 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.11 0.95 7.57 -2.39 -0.02 0.94 16 38 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -87.41 370.17 -0.39 -87.80 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.29 Total: 13.09 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.50 Total: -32.76 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -2.29 Total: -69.65 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: -4.60 Total: -88.97 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Atomic # 16 Polarization: 44.37 SS G_CDS: -0.25 Total: 44.13 kcal Total: -87.41 -0.39 -87.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417641910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.126 kcal (2) G-P(sol) polarization free energy of solvation -87.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds