Wall clock time and date at job start Tue Mar 31 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48499 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47162 * 299.99794 * 3 2 1 6 6 H 1.48504 * 109.47002 * 60.00007 * 3 2 1 7 7 C 1.40223 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99940 * 197.87797 * 7 2 1 9 9 C 1.41106 * 120.00251 * 17.87892 * 7 2 1 10 10 C 1.40888 * 120.10758 * 204.62208 * 9 7 2 11 11 C 1.36312 * 119.89574 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10553 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89213 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00285 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99637 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99667 * 180.27900 * 15 13 12 17 17 C 1.53001 * 109.46822 * 179.72452 * 16 15 13 18 18 O 1.42904 * 109.64225 * 300.70323 * 17 16 15 19 19 C 1.53869 * 109.64533 * 180.26904 * 17 16 15 20 20 C 1.55050 * 106.62671 * 192.96620 * 19 17 16 21 21 S 1.83289 * 102.56228 * 42.43649 * 20 19 17 22 22 O 1.42102 * 109.35515 * 90.18808 * 21 20 19 23 23 O 1.42108 * 109.35228 * 223.25540 * 21 20 19 24 24 C 1.54168 * 109.64445 * 61.12660 * 17 16 15 25 25 C 1.40011 * 120.20925 * 0.25213 * 12 11 10 26 26 C 1.36315 * 120.10599 * 359.48457 * 25 12 11 27 27 H 0.97007 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.05017 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.94949 * 180.02562 * 11 10 9 30 30 H 0.96993 * 120.00009 * 0.02562 * 15 13 12 31 31 H 1.09001 * 109.46863 * 299.72217 * 16 15 13 32 32 H 1.09002 * 109.47273 * 59.72568 * 16 15 13 33 33 H 0.96692 * 114.00099 * 59.30152 * 18 17 16 34 34 H 1.09005 * 110.03220 * 312.26076 * 19 17 16 35 35 H 1.09004 * 110.02562 * 73.62896 * 19 17 16 36 36 H 1.08998 * 110.79482 * 160.70216 * 20 19 17 37 37 H 1.08994 * 110.79142 * 283.97965 * 20 19 17 38 38 H 1.08990 * 110.32439 * 266.66391 * 24 17 16 39 39 H 1.09008 * 110.31881 * 28.86216 * 24 17 16 40 40 H 1.08000 * 119.94897 * 179.74403 * 25 12 11 41 41 H 1.08006 * 120.05474 * 180.23138 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0484 -1.2369 0.2877 9 6 1.3531 -2.4071 -0.3741 10 6 1.8267 -3.6494 0.0919 11 6 1.1915 -4.7990 -0.2731 12 6 0.0704 -4.7465 -1.1102 13 6 -0.6136 -5.9945 -1.5031 14 8 -0.2035 -7.0655 -1.0994 15 7 -1.6933 -5.9463 -2.3084 16 6 -2.3758 -7.1843 -2.6933 17 6 -3.5638 -6.8515 -3.5982 18 8 -4.4694 -5.9906 -2.9048 19 6 -4.2877 -8.1486 -3.9995 20 6 -5.2504 -7.7794 -5.1575 21 16 -4.2230 -6.6676 -6.1909 22 8 -3.5245 -7.4373 -7.1599 23 8 -5.0022 -5.5521 -6.6007 24 6 -3.0613 -6.1529 -4.8774 25 6 -0.4005 -3.5147 -1.5806 26 6 0.2249 -2.3594 -1.2166 27 1 -0.4850 0.8401 -0.0004 28 1 2.6917 -3.6909 0.7374 29 1 1.5536 -5.7518 0.0840 30 1 -2.0207 -5.0919 -2.6301 31 1 -1.6807 -7.8307 -3.2292 32 1 -2.7321 -7.6958 -1.7992 33 1 -4.0764 -5.1547 -2.6188 34 1 -3.5643 -8.8906 -4.3377 35 1 -4.8531 -8.5378 -3.1528 36 1 -5.5414 -8.6683 -5.7171 37 1 -6.1291 -7.2577 -4.7786 38 1 -3.0887 -5.0705 -4.7532 39 1 -2.0498 -6.4819 -5.1159 40 1 -1.2631 -3.4794 -2.2294 41 1 -0.1413 -1.4094 -1.5770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417868604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:44 Heat of formation + Delta-G solvation = -140.067829 kcal Electronic energy + Delta-G solvation = -26790.472831 eV Core-core repulsion = 22762.116274 eV Total energy + Delta-G solvation = -4028.356557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96869 -38.61650 -37.33780 -37.13646 -36.31132 -34.21786 -33.99861 -33.91899 -30.69646 -29.89552 -29.54423 -27.72368 -25.92849 -24.16305 -21.95081 -21.19802 -20.92256 -19.94541 -19.15574 -18.15761 -17.62250 -17.33668 -16.56063 -16.27693 -15.89980 -15.60506 -15.46106 -15.30626 -14.66226 -14.45010 -14.15072 -14.09130 -13.76532 -13.32199 -13.17587 -12.95458 -12.76857 -12.55737 -12.43666 -12.30445 -12.19564 -12.09206 -12.00836 -11.69866 -11.43902 -11.41232 -11.34098 -11.03049 -10.82844 -10.74290 -10.37363 -10.13694 -9.66541 -9.44551 -9.15018 -8.87234 -7.83303 -7.64979 -7.13011 -4.69685 -0.30694 2.10688 2.16224 2.84208 2.90159 2.93703 2.95696 3.16909 3.35892 3.49543 3.67185 3.71155 3.74819 3.85637 4.02382 4.26616 4.41805 4.45910 4.50725 4.94298 5.01569 5.20076 5.32721 5.37248 5.44150 5.49437 5.55528 5.88336 5.94038 6.21465 6.63275 6.67825 6.73568 6.92617 7.02673 7.08549 7.33090 7.51801 7.65914 7.76383 7.96581 8.01800 8.30121 8.53673 8.65108 8.88405 9.78830 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.002576 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.279915 B =10864.862467 C =11912.731221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.289 4.289 13 C 0.574 3.426 14 O -0.571 6.571 15 N -0.744 5.744 16 C 0.105 3.895 17 C 0.135 3.865 18 O -0.546 6.546 19 C -0.105 4.105 20 C -0.581 4.581 21 S 2.396 3.604 22 O -0.937 6.937 23 O -0.935 6.935 24 C -0.634 4.634 25 C -0.063 4.063 26 C -0.178 4.178 27 H 0.287 0.713 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.394 0.606 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.387 0.613 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.086 0.914 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 -8.512 -7.886 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.039 4.039 12 C -0.293 4.293 13 C 0.370 3.630 14 O -0.453 6.453 15 N -0.399 5.399 16 C -0.021 4.021 17 C 0.092 3.908 18 O -0.353 6.353 19 C -0.143 4.143 20 C -0.711 4.711 21 S 2.579 3.421 22 O -0.934 6.934 23 O -0.932 6.932 24 C -0.762 4.762 25 C -0.083 4.083 26 C -0.197 4.197 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.229 0.771 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.068 -9.351 -8.675 16.250 hybrid contribution 0.550 1.567 0.836 1.859 sum -9.518 -7.784 -7.839 14.582 Atomic orbital electron populations 1.69743 1.07946 1.30117 1.31386 1.26120 0.94838 1.01998 0.91832 0.86154 0.81122 0.80070 0.78947 1.18019 1.19308 1.19600 1.19914 0.98490 0.91166 1.37065 0.89578 1.17798 0.90335 0.92200 0.87136 1.20728 1.04643 0.92629 1.07841 1.20355 0.92823 0.97167 0.93561 1.18828 1.04792 0.90818 1.14895 1.18590 0.78383 0.89778 0.76281 1.90649 1.66345 1.31728 1.56546 1.45828 1.32256 1.08321 1.53544 1.21807 0.92626 0.88765 0.98875 1.21743 0.89586 0.90217 0.89217 1.86547 1.39249 1.33153 1.76348 1.22155 0.97782 0.95313 0.99076 1.30582 1.12351 1.16273 1.11928 1.08896 0.78300 0.77226 0.77724 1.93630 1.72787 1.70983 1.55966 1.93623 1.68509 1.50589 1.80503 1.31375 1.17491 1.12095 1.15282 1.20419 0.97361 0.92629 0.97855 1.20979 0.99915 0.96911 1.01867 0.90163 0.88316 0.88092 0.77074 0.90429 0.90186 0.76259 0.87552 0.87013 0.84243 0.83801 0.83429 0.82984 0.89582 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.69 10.96 55.56 0.61 -17.08 16 2 C 0.07 1.66 5.13 -17.31 -0.09 1.57 16 3 Si 0.91 16.69 29.60 -169.99 -5.03 11.66 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.53 9.04 -37.75 -0.34 -10.87 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.14 5.57 -106.80 -0.60 2.55 16 10 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 11 C -0.02 -0.45 9.52 -39.61 -0.38 -0.82 16 12 C -0.29 -6.15 5.89 -104.73 -0.62 -6.77 16 13 C 0.57 11.09 7.76 -12.42 -0.10 10.99 16 14 O -0.57 -12.62 16.32 5.29 0.09 -12.53 16 15 N -0.74 -10.31 5.04 -61.31 -0.31 -10.62 16 16 C 0.10 1.15 4.67 -4.04 -0.02 1.13 16 17 C 0.14 1.08 0.83 -89.56 -0.07 1.01 16 18 O -0.55 -4.72 12.86 -35.23 -0.45 -5.17 16 19 C -0.10 -0.62 5.48 -25.20 -0.14 -0.76 16 20 C -0.58 -3.26 7.20 38.24 0.28 -2.98 16 21 S 2.40 20.01 6.10 -107.50 -0.66 19.36 16 22 O -0.94 -10.89 18.14 -57.73 -1.05 -11.94 16 23 O -0.94 -11.39 18.15 -57.73 -1.05 -12.44 16 24 C -0.63 -4.72 5.79 37.77 0.22 -4.51 16 25 C -0.06 -1.30 9.47 -39.61 -0.38 -1.67 16 26 C -0.18 -4.12 8.64 -39.27 -0.34 -4.46 16 27 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 28 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.10 2.20 7.63 -52.49 -0.40 1.80 16 30 H 0.39 4.60 5.11 -40.82 -0.21 4.39 16 31 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.39 2.77 7.77 45.56 0.35 3.12 16 34 H 0.11 0.45 8.11 -51.93 -0.42 0.03 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.15 0.95 8.00 -51.93 -0.42 0.53 16 39 H 0.15 1.07 7.87 -51.92 -0.41 0.66 16 40 H 0.09 1.42 6.37 -52.49 -0.33 1.09 16 41 H 0.12 2.83 6.16 -52.48 -0.32 2.51 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -33.92 355.21 -9.69 -43.61 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.24 Total: 11.35 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -2.95 Total: -21.54 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.30 Total: -27.71 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -2.46 Total: -42.08 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 20.01 SS G_CDS: -0.66 Total: 19.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.92 -9.69 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417868604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.460 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds