Wall clock time and date at job start Tue Mar 31 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48499 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47162 * 299.99794 * 3 2 1 6 6 H 1.48504 * 109.47002 * 60.00007 * 3 2 1 7 7 C 1.40223 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99940 * 197.87797 * 7 2 1 9 9 C 1.41106 * 120.00251 * 17.87892 * 7 2 1 10 10 C 1.40888 * 120.10758 * 204.62208 * 9 7 2 11 11 C 1.36312 * 119.89574 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10553 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89213 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00285 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99637 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99667 * 180.27900 * 15 13 12 17 17 C 1.53001 * 109.46822 * 179.72452 * 16 15 13 18 18 O 1.42904 * 109.64225 * 300.70323 * 17 16 15 19 19 C 1.53869 * 109.64533 * 180.26904 * 17 16 15 20 20 C 1.55050 * 106.62671 * 192.96620 * 19 17 16 21 21 S 1.83289 * 102.56228 * 42.43649 * 20 19 17 22 22 O 1.42102 * 109.35515 * 90.18808 * 21 20 19 23 23 O 1.42108 * 109.35228 * 223.25540 * 21 20 19 24 24 C 1.54168 * 109.64445 * 61.12660 * 17 16 15 25 25 C 1.40011 * 120.20925 * 0.25213 * 12 11 10 26 26 C 1.36315 * 120.10599 * 359.48457 * 25 12 11 27 27 H 0.97007 * 119.99864 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.05017 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.94949 * 180.02562 * 11 10 9 30 30 H 0.96993 * 120.00009 * 0.02562 * 15 13 12 31 31 H 1.09001 * 109.46863 * 299.72217 * 16 15 13 32 32 H 1.09002 * 109.47273 * 59.72568 * 16 15 13 33 33 H 0.96692 * 114.00099 * 59.30152 * 18 17 16 34 34 H 1.09005 * 110.03220 * 312.26076 * 19 17 16 35 35 H 1.09004 * 110.02562 * 73.62896 * 19 17 16 36 36 H 1.08998 * 110.79482 * 160.70216 * 20 19 17 37 37 H 1.08994 * 110.79142 * 283.97965 * 20 19 17 38 38 H 1.08990 * 110.32439 * 266.66391 * 24 17 16 39 39 H 1.09008 * 110.31881 * 28.86216 * 24 17 16 40 40 H 1.08000 * 119.94897 * 179.74403 * 25 12 11 41 41 H 1.08006 * 120.05474 * 180.23138 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0484 -1.2369 0.2877 9 6 1.3531 -2.4071 -0.3741 10 6 1.8267 -3.6494 0.0919 11 6 1.1915 -4.7990 -0.2731 12 6 0.0704 -4.7465 -1.1102 13 6 -0.6136 -5.9945 -1.5031 14 8 -0.2035 -7.0655 -1.0994 15 7 -1.6933 -5.9463 -2.3084 16 6 -2.3758 -7.1843 -2.6933 17 6 -3.5638 -6.8515 -3.5982 18 8 -4.4694 -5.9906 -2.9048 19 6 -4.2877 -8.1486 -3.9995 20 6 -5.2504 -7.7794 -5.1575 21 16 -4.2230 -6.6676 -6.1909 22 8 -3.5245 -7.4373 -7.1599 23 8 -5.0022 -5.5521 -6.6007 24 6 -3.0613 -6.1529 -4.8774 25 6 -0.4005 -3.5147 -1.5806 26 6 0.2249 -2.3594 -1.2166 27 1 -0.4850 0.8401 -0.0004 28 1 2.6917 -3.6909 0.7374 29 1 1.5536 -5.7518 0.0840 30 1 -2.0207 -5.0919 -2.6301 31 1 -1.6807 -7.8307 -3.2292 32 1 -2.7321 -7.6958 -1.7992 33 1 -4.0764 -5.1547 -2.6188 34 1 -3.5643 -8.8906 -4.3377 35 1 -4.8531 -8.5378 -3.1528 36 1 -5.5414 -8.6683 -5.7171 37 1 -6.1291 -7.2577 -4.7786 38 1 -3.0887 -5.0705 -4.7532 39 1 -2.0498 -6.4819 -5.1159 40 1 -1.2631 -3.4794 -2.2294 41 1 -0.1413 -1.4094 -1.5770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417868604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:44 Heat of formation + Delta-G solvation = -167.170818 kcal Electronic energy + Delta-G solvation = -26791.648105 eV Core-core repulsion = 22762.116274 eV Total energy + Delta-G solvation = -4029.531831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10029 -39.79990 -38.75260 -38.11552 -37.09073 -35.67734 -35.26592 -34.73407 -32.18645 -31.30641 -30.75033 -28.74974 -27.37983 -25.03539 -23.44372 -22.77567 -21.76541 -21.34332 -19.89348 -19.38608 -19.12378 -18.23076 -17.51033 -17.27506 -16.97742 -16.89493 -16.37394 -16.23960 -15.77809 -15.73529 -15.44435 -15.01556 -14.87638 -14.82364 -14.42255 -13.98699 -13.89204 -13.69517 -13.51144 -13.40180 -13.22840 -13.16745 -13.06578 -12.86163 -12.63122 -12.55856 -12.38511 -12.34895 -12.07688 -11.77174 -11.45849 -11.37814 -11.13294 -11.06597 -10.74085 -10.14061 -9.57729 -9.40963 -8.80643 -6.48896 -0.93998 0.43395 1.15011 1.38163 1.41776 1.54649 1.56177 2.11191 2.17063 2.23556 2.57981 2.77344 2.88921 3.08329 3.22505 3.40109 3.61309 3.68996 3.80956 3.99149 4.25262 4.30038 4.37588 4.44207 4.54651 4.58005 4.68281 4.78489 4.92245 4.94329 4.99842 5.02781 5.15417 5.29645 5.46311 5.58327 5.81366 5.92951 5.99009 6.23027 6.48108 6.53714 6.63127 6.77029 6.88572 7.40357 8.14464 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.002576 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.279915 B =10864.862467 C =11912.731221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.474 4.474 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.255 4.255 11 C -0.033 4.033 12 C -0.294 4.294 13 C 0.575 3.425 14 O -0.601 6.601 15 N -0.724 5.724 16 C 0.100 3.900 17 C 0.143 3.857 18 O -0.552 6.552 19 C -0.110 4.110 20 C -0.557 4.557 21 S 2.399 3.601 22 O -0.975 6.975 23 O -0.980 6.980 24 C -0.632 4.632 25 C -0.053 4.053 26 C -0.198 4.198 27 H 0.297 0.703 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.406 0.594 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.128 0.872 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 -8.889 -8.412 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.101 0.899 9 C 0.098 3.902 10 C -0.275 4.275 11 C -0.052 4.052 12 C -0.299 4.299 13 C 0.369 3.631 14 O -0.485 6.485 15 N -0.378 5.378 16 C -0.025 4.025 17 C 0.100 3.900 18 O -0.360 6.360 19 C -0.148 4.148 20 C -0.689 4.689 21 S 2.587 3.413 22 O -0.972 6.972 23 O -0.977 6.977 24 C -0.762 4.762 25 C -0.072 4.072 26 C -0.218 4.218 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.244 0.756 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.146 0.854 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.575 -9.712 -9.253 17.718 hybrid contribution 0.926 1.535 1.037 2.071 sum -10.649 -8.177 -8.216 15.741 Atomic orbital electron populations 1.69752 1.09107 1.31565 1.31466 1.26874 0.95555 1.04683 0.90876 0.85099 0.79439 0.75688 0.79261 1.18217 1.18432 1.18888 1.20134 0.98718 0.92308 1.38912 0.89893 1.18138 0.91328 0.92759 0.87941 1.20858 1.05225 0.92892 1.08503 1.20512 0.93583 0.96916 0.94166 1.19169 1.04379 0.92303 1.14027 1.18301 0.79470 0.88390 0.76943 1.90636 1.67570 1.32364 1.57960 1.45598 1.30447 1.10290 1.51454 1.22052 0.93600 0.87341 0.99474 1.21736 0.88601 0.91230 0.88415 1.86559 1.39494 1.33570 1.76406 1.22338 0.98369 0.94542 0.99572 1.30440 1.11619 1.16090 1.10771 1.08566 0.78138 0.76692 0.77906 1.93578 1.73844 1.71433 1.58342 1.93564 1.69456 1.52772 1.81944 1.31351 1.17510 1.12951 1.14388 1.20733 0.97855 0.91323 0.97263 1.21025 1.00469 0.97600 1.02680 0.89163 0.88072 0.87984 0.75643 0.89783 0.90516 0.75608 0.85502 0.85704 0.81613 0.82880 0.82345 0.82365 0.85393 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.71 10.96 21.87 0.24 -36.48 16 2 C 0.04 1.78 5.13 85.35 0.44 2.22 16 3 Si 0.99 33.99 29.60 68.60 2.03 36.02 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.47 -23.34 9.04 23.46 0.21 -23.13 16 8 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.10 5.09 5.57 -21.28 -0.12 4.97 16 10 C -0.26 -12.26 9.73 22.47 0.22 -12.04 16 11 C -0.03 -1.49 9.52 22.25 0.21 -1.28 16 12 C -0.29 -12.35 5.89 -19.93 -0.12 -12.47 16 13 C 0.58 21.38 7.76 86.72 0.67 22.05 16 14 O -0.60 -26.00 16.32 -3.98 -0.07 -26.07 16 15 N -0.72 -18.25 5.04 -466.14 -2.35 -20.59 16 16 C 0.10 1.92 4.67 86.38 0.40 2.32 16 17 C 0.14 1.84 0.83 -10.10 -0.01 1.83 16 18 O -0.55 -7.81 12.86 -148.98 -1.92 -9.72 16 19 C -0.11 -0.89 5.48 31.59 0.17 -0.71 16 20 C -0.56 -4.31 7.20 72.68 0.52 -3.79 16 21 S 2.40 36.36 6.10 -56.49 -0.34 36.02 16 22 O -0.97 -21.76 18.14 -127.47 -2.31 -24.07 16 23 O -0.98 -23.26 18.15 -127.47 -2.31 -25.57 16 24 C -0.63 -7.90 5.79 72.38 0.42 -7.48 16 25 C -0.05 -2.11 9.47 22.25 0.21 -1.90 16 26 C -0.20 -9.27 8.64 22.47 0.19 -9.08 16 27 H 0.30 12.13 8.29 -92.70 -0.77 11.36 16 28 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.10 4.54 7.63 -2.91 -0.02 4.52 16 30 H 0.41 8.22 5.11 -92.71 -0.47 7.74 16 31 H 0.08 1.57 8.12 -2.39 -0.02 1.56 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.39 4.42 7.77 -74.06 -0.58 3.84 16 34 H 0.13 0.55 8.11 -2.38 -0.02 0.54 16 35 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.16 1.64 8.00 -2.39 -0.02 1.62 16 39 H 0.16 1.84 7.87 -2.38 -0.02 1.82 16 40 H 0.13 3.87 6.37 -2.91 -0.02 3.85 16 41 H 0.11 5.40 6.16 -2.91 -0.02 5.38 16 Total: -1.00 -74.82 355.21 -3.55 -78.37 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.04 Total: 30.58 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 3.43 Total: -38.49 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -2.11 Total: -57.07 kcal Atomic # 8 Polarization: -78.82 SS G_CDS: -6.61 Total: -85.43 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 16 Polarization: 36.36 SS G_CDS: -0.34 Total: 36.02 kcal Total: -74.82 -3.55 -78.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417868604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.801 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds