Wall clock time and date at job start Tue Mar 31 2020 22:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99766 * 2 1 4 4 H 1.48502 * 109.47231 * 239.99594 * 3 2 1 5 5 H 1.48503 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47182 * 120.00004 * 3 2 1 7 7 C 1.37874 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99743 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99702 * 249.84576 * 10 9 7 12 12 C 1.50697 * 109.46952 * 264.92645 * 11 10 9 13 13 C 1.34519 * 125.78973 * 97.25978 * 12 11 10 14 14 C 1.41379 * 106.84271 * 179.97438 * 13 12 11 15 15 C 1.34524 * 106.83997 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.41664 * 359.73150 * 15 14 13 17 17 C 1.34771 * 119.99984 * 69.84839 * 10 9 7 18 18 O 1.21616 * 119.99714 * 182.95569 * 17 10 9 19 19 C 1.47097 * 120.00174 * 2.95639 * 17 10 9 20 20 C 1.31102 * 116.25403 * 209.65676 * 19 17 10 21 21 S 1.76351 * 121.96478 * 181.02959 * 20 19 17 22 22 O 1.42095 * 104.46981 * 231.86909 * 21 20 19 23 23 O 1.42098 * 104.46917 * 103.46000 * 21 20 19 24 24 C 1.82008 * 103.14550 * 347.66622 * 21 20 19 25 25 C 1.53624 * 107.24771 * 44.56082 * 24 21 20 26 26 C 1.48952 * 116.36756 * 29.53610 * 19 17 10 27 27 H 0.96995 * 120.00452 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47326 * 59.99736 * 9 7 2 29 29 H 1.09004 * 109.47129 * 299.99493 * 9 7 2 30 30 H 1.08995 * 109.47293 * 24.92672 * 11 10 9 31 31 H 1.09001 * 109.46929 * 144.92920 * 11 10 9 32 32 H 1.08004 * 126.57724 * 359.96486 * 13 12 11 33 33 H 1.07999 * 126.58095 * 179.97438 * 14 13 12 34 34 H 1.07996 * 125.78789 * 180.02562 * 15 14 13 35 35 H 1.08004 * 119.04305 * 0.90791 * 20 19 17 36 36 H 1.09003 * 109.89926 * 285.13019 * 24 21 20 37 37 H 1.09001 * 109.96828 * 164.03550 * 24 21 20 38 38 H 1.08992 * 109.49011 * 170.32334 * 25 24 21 39 39 H 1.09003 * 109.50083 * 50.27625 * 25 24 21 40 40 H 1.08998 * 108.71221 * 36.88436 * 26 19 17 41 41 H 1.09001 * 108.71256 * 278.74350 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0005 11 6 2.3469 -4.4534 -1.1906 12 6 1.4736 -5.6738 -1.0523 13 6 0.2440 -5.8247 -1.5766 14 6 -0.2052 -7.1123 -1.2035 15 6 0.7766 -7.6710 -0.4731 16 8 1.7931 -6.7973 -0.3895 17 6 2.9467 -3.8635 1.0962 18 8 3.7752 -4.7536 1.0781 19 6 2.7562 -3.0607 2.3140 20 6 3.8100 -2.9082 3.0789 21 16 3.7446 -1.9973 4.5875 22 8 4.8135 -1.0665 4.4868 23 8 3.7240 -2.9920 5.6022 24 6 2.1388 -1.1464 4.4881 25 6 1.1086 -2.1738 3.9949 26 6 1.3898 -2.5112 2.5371 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8904 30 1 2.0451 -3.8887 -2.0726 31 1 3.3874 -4.7612 -1.2946 32 1 -0.2964 -5.1010 -2.1688 33 1 -1.1546 -7.5608 -1.4558 34 1 0.7534 -8.6570 -0.0329 35 1 4.7458 -3.3552 2.7774 36 1 2.2016 -0.3167 3.7840 37 1 1.8519 -0.7765 5.4725 38 1 0.1062 -1.7555 4.0846 39 1 1.1801 -3.0790 4.5980 40 1 0.6582 -3.2460 2.2009 41 1 1.2751 -1.6063 1.9403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442500199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:48 Heat of formation + Delta-G solvation = -40.803500 kcal Electronic energy + Delta-G solvation = -28514.169745 eV Core-core repulsion = 24490.117612 eV Total energy + Delta-G solvation = -4024.052133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31610 -39.98083 -36.90697 -36.46130 -35.68492 -35.56420 -33.12558 -32.68090 -32.01449 -30.53033 -28.14678 -27.02682 -25.97785 -23.77693 -23.11490 -21.52103 -21.11892 -20.35952 -18.93742 -18.08426 -17.28250 -17.16686 -16.56670 -16.20384 -15.84120 -15.62553 -15.42120 -15.28158 -14.80883 -14.63125 -14.50676 -13.76422 -13.59137 -13.37738 -13.03078 -12.67454 -12.59919 -12.54199 -12.45898 -12.13455 -11.91903 -11.78870 -11.75919 -11.62678 -11.39030 -11.15011 -11.04792 -10.88167 -10.61084 -10.26689 -10.05496 -9.96889 -9.71683 -9.37637 -9.35571 -8.81126 -8.31223 -8.06331 -6.46413 -4.55527 0.34849 1.31556 1.90441 2.76453 2.99623 3.10263 3.16217 3.17860 3.21595 3.47486 3.78577 3.89921 4.12572 4.38194 4.63308 4.84759 4.89566 4.90384 5.00295 5.07343 5.21625 5.22727 5.36803 5.48121 5.65527 5.70261 5.83654 5.87971 5.97450 5.99676 6.11294 6.12182 6.28323 6.37845 6.48307 6.68610 6.78810 6.90452 7.19549 7.39127 7.50352 7.74516 7.91699 8.48404 8.64292 9.12506 10.58364 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.005535 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.202081 B = 5057.952539 C = 6962.348670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.197 3.803 10 N -0.585 5.585 11 C 0.194 3.806 12 C -0.018 4.018 13 C -0.202 4.202 14 C -0.217 4.217 15 C -0.048 4.048 16 O -0.164 6.164 17 C 0.535 3.465 18 O -0.544 6.544 19 C 0.039 3.961 20 C -0.677 4.677 21 S 2.487 3.513 22 O -0.944 6.944 23 O -0.944 6.944 24 C -0.600 4.600 25 C -0.106 4.106 26 C -0.153 4.153 27 H 0.271 0.729 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.197 0.803 35 H 0.171 0.829 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -5.556 2.367 6.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.315 5.315 11 C 0.070 3.930 12 C -0.070 4.070 13 C -0.222 4.222 14 C -0.237 4.237 15 C -0.117 4.117 16 O -0.059 6.059 17 C 0.322 3.678 18 O -0.423 6.423 19 C 0.035 3.965 20 C -0.785 4.785 21 S 2.668 3.332 22 O -0.941 6.941 23 O -0.941 6.941 24 C -0.730 4.730 25 C -0.145 4.145 26 C -0.188 4.188 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.240 -5.907 3.128 7.049 hybrid contribution -0.395 0.776 -1.133 1.429 sum -2.635 -5.131 1.995 6.103 Atomic orbital electron populations 1.69896 1.05819 1.28021 1.48163 1.24911 0.94912 0.99230 0.94318 0.86698 0.79894 0.82387 0.79772 1.19734 1.20779 1.19264 1.21486 0.93949 0.90220 1.53221 0.91629 1.20604 0.88216 0.82238 1.01097 1.48275 1.40618 1.30760 1.11855 1.19807 0.98714 0.84956 0.89526 1.23148 0.97265 0.88429 0.98158 1.21644 0.95769 0.98409 1.06410 1.21786 1.01230 0.96341 1.04304 1.24020 0.87479 0.96153 1.04047 1.84136 1.40121 1.22680 1.58919 1.18816 0.80878 0.83743 0.84386 1.90751 1.34695 1.33032 1.83814 1.20646 0.95249 0.88687 0.91900 1.32671 1.06123 1.18318 1.21421 1.05579 0.77075 0.75672 0.74900 1.93579 1.50364 1.63776 1.86368 1.93580 1.86924 1.57848 1.55719 1.30292 1.19525 1.11916 1.11274 1.21383 0.99954 0.97057 0.96079 1.21697 0.92164 1.07197 0.97711 0.91964 0.93819 0.91366 0.86803 0.89137 0.83383 0.83770 0.78611 0.81123 0.83581 0.84543 0.88273 0.90439 0.88010 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.69 13.29 55.43 0.74 -19.96 16 2 C 0.07 1.62 4.99 -17.82 -0.09 1.54 16 3 Si 0.89 18.47 29.54 -169.99 -5.02 13.45 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.55 -12.35 6.74 -34.44 -0.23 -12.58 16 8 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.20 4.00 4.78 -5.19 -0.02 3.97 16 10 N -0.58 -11.32 2.56 -177.83 -0.45 -11.78 16 11 C 0.19 3.31 5.88 -5.19 -0.03 3.28 16 12 C -0.02 -0.30 6.86 -35.62 -0.24 -0.55 16 13 C -0.20 -3.01 10.81 -39.70 -0.43 -3.44 16 14 C -0.22 -2.88 10.91 -39.70 -0.43 -3.31 16 15 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 16 O -0.16 -2.83 10.65 5.72 0.06 -2.77 16 17 C 0.54 11.06 6.98 -12.67 -0.09 10.97 16 18 O -0.54 -12.41 15.86 5.26 0.08 -12.32 16 19 C 0.04 0.73 4.96 -103.61 -0.51 0.22 16 20 C -0.68 -12.19 9.33 28.99 0.27 -11.92 16 21 S 2.49 38.83 5.58 -107.50 -0.60 38.23 16 22 O -0.94 -17.46 17.96 -57.49 -1.03 -18.49 16 23 O -0.94 -16.54 17.96 -57.49 -1.03 -17.57 16 24 C -0.60 -7.38 6.58 37.48 0.25 -7.14 16 25 C -0.11 -1.36 5.85 -26.79 -0.16 -1.52 16 26 C -0.15 -2.49 3.34 -29.10 -0.10 -2.59 16 27 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 28 H 0.04 0.92 7.83 -51.93 -0.41 0.52 16 29 H 0.07 1.35 3.53 -51.95 -0.18 1.17 16 30 H 0.11 1.71 7.90 -51.93 -0.41 1.30 16 31 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 32 H 0.15 2.00 8.06 -52.48 -0.42 1.58 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.20 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.17 3.18 7.42 -52.48 -0.39 2.79 16 36 H 0.15 1.81 8.12 -51.93 -0.42 1.39 16 37 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.10 1.61 6.60 -51.93 -0.34 1.26 16 41 H 0.17 3.18 4.16 -51.93 -0.22 2.97 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -31.48 352.56 -8.25 -39.73 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.84 Total: 9.54 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -1.47 Total: -23.38 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.28 Total: -31.73 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.92 Total: -51.15 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 16 Polarization: 38.83 SS G_CDS: -0.60 Total: 38.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.48 -8.25 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442500199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.071 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds