Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99766 * 2 1 4 4 H 1.48502 * 109.47231 * 239.99594 * 3 2 1 5 5 H 1.48503 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47182 * 120.00004 * 3 2 1 7 7 C 1.37874 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99743 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99702 * 249.84576 * 10 9 7 12 12 C 1.50697 * 109.46952 * 264.92645 * 11 10 9 13 13 C 1.34519 * 125.78973 * 97.25978 * 12 11 10 14 14 C 1.41379 * 106.84271 * 179.97438 * 13 12 11 15 15 C 1.34524 * 106.83997 * 0.02562 * 14 13 12 16 16 O 1.34301 * 108.41664 * 359.73150 * 15 14 13 17 17 C 1.34771 * 119.99984 * 69.84839 * 10 9 7 18 18 O 1.21616 * 119.99714 * 182.95569 * 17 10 9 19 19 C 1.47097 * 120.00174 * 2.95639 * 17 10 9 20 20 C 1.31102 * 116.25403 * 209.65676 * 19 17 10 21 21 S 1.76351 * 121.96478 * 181.02959 * 20 19 17 22 22 O 1.42095 * 104.46981 * 231.86909 * 21 20 19 23 23 O 1.42098 * 104.46917 * 103.46000 * 21 20 19 24 24 C 1.82008 * 103.14550 * 347.66622 * 21 20 19 25 25 C 1.53624 * 107.24771 * 44.56082 * 24 21 20 26 26 C 1.48952 * 116.36756 * 29.53610 * 19 17 10 27 27 H 0.96995 * 120.00452 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47326 * 59.99736 * 9 7 2 29 29 H 1.09004 * 109.47129 * 299.99493 * 9 7 2 30 30 H 1.08995 * 109.47293 * 24.92672 * 11 10 9 31 31 H 1.09001 * 109.46929 * 144.92920 * 11 10 9 32 32 H 1.08004 * 126.57724 * 359.96486 * 13 12 11 33 33 H 1.07999 * 126.58095 * 179.97438 * 14 13 12 34 34 H 1.07996 * 125.78789 * 180.02562 * 15 14 13 35 35 H 1.08004 * 119.04305 * 0.90791 * 20 19 17 36 36 H 1.09003 * 109.89926 * 285.13019 * 24 21 20 37 37 H 1.09001 * 109.96828 * 164.03550 * 24 21 20 38 38 H 1.08992 * 109.49011 * 170.32334 * 25 24 21 39 39 H 1.09003 * 109.50083 * 50.27625 * 25 24 21 40 40 H 1.08998 * 108.71221 * 36.88436 * 26 19 17 41 41 H 1.09001 * 108.71256 * 278.74350 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6127 0.0005 11 6 2.3469 -4.4534 -1.1906 12 6 1.4736 -5.6738 -1.0523 13 6 0.2440 -5.8247 -1.5766 14 6 -0.2052 -7.1123 -1.2035 15 6 0.7766 -7.6710 -0.4731 16 8 1.7931 -6.7973 -0.3895 17 6 2.9467 -3.8635 1.0962 18 8 3.7752 -4.7536 1.0781 19 6 2.7562 -3.0607 2.3140 20 6 3.8100 -2.9082 3.0789 21 16 3.7446 -1.9973 4.5875 22 8 4.8135 -1.0665 4.4868 23 8 3.7240 -2.9920 5.6022 24 6 2.1388 -1.1464 4.4881 25 6 1.1086 -2.1738 3.9949 26 6 1.3898 -2.5112 2.5371 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8904 30 1 2.0451 -3.8887 -2.0726 31 1 3.3874 -4.7612 -1.2946 32 1 -0.2964 -5.1010 -2.1688 33 1 -1.1546 -7.5608 -1.4558 34 1 0.7534 -8.6570 -0.0329 35 1 4.7458 -3.3552 2.7774 36 1 2.2016 -0.3167 3.7840 37 1 1.8519 -0.7765 5.4725 38 1 0.1062 -1.7555 4.0846 39 1 1.1801 -3.0790 4.5980 40 1 0.6582 -3.2460 2.2009 41 1 1.2751 -1.6063 1.9403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442500199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = -62.195278 kcal Electronic energy + Delta-G solvation = -28515.097362 eV Core-core repulsion = 24490.117612 eV Total energy + Delta-G solvation = -4024.979750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.49053 -41.50662 -38.24860 -37.84698 -37.10531 -37.01648 -34.76968 -33.89673 -33.26802 -31.86333 -29.55528 -28.48269 -27.27878 -25.36385 -24.44299 -22.66588 -22.40654 -21.56086 -20.35557 -19.38234 -18.87594 -18.40012 -18.03742 -17.59436 -17.22219 -16.98001 -16.80211 -16.60488 -16.28529 -16.19616 -15.70912 -15.06321 -14.90557 -14.67290 -14.42034 -14.21676 -13.95435 -13.69804 -13.58889 -13.47215 -13.29334 -13.11832 -13.05726 -13.00389 -12.79833 -12.67270 -12.45907 -12.36404 -12.21711 -11.79532 -11.64616 -11.27516 -10.92885 -10.82977 -10.76313 -10.52762 -9.69992 -9.43771 -8.22315 -6.34276 -0.86946 -0.14123 0.71924 1.43141 1.49152 1.53332 1.63179 1.71747 1.82462 2.16669 2.35761 2.43344 2.66935 3.08060 3.24557 3.38977 3.56426 3.76806 3.83368 3.90583 4.06589 4.15559 4.26506 4.33683 4.41640 4.47339 4.56145 4.65166 4.77632 4.86942 4.90874 5.01429 5.06987 5.16557 5.17685 5.26842 5.42002 5.58431 5.63553 5.75648 6.03282 6.21872 6.34149 6.74063 7.02123 7.35325 8.81839 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.005535 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.202081 B = 5057.952539 C = 6962.348670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.050 3.950 3 Si 0.922 3.078 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.207 3.793 10 N -0.582 5.582 11 C 0.190 3.810 12 C -0.050 4.050 13 C -0.196 4.196 14 C -0.219 4.219 15 C -0.048 4.048 16 O -0.195 6.195 17 C 0.522 3.478 18 O -0.578 6.578 19 C 0.029 3.971 20 C -0.688 4.688 21 S 2.497 3.503 22 O -0.977 6.977 23 O -0.964 6.964 24 C -0.573 4.573 25 C -0.107 4.107 26 C -0.151 4.151 27 H 0.273 0.727 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.234 0.766 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.186 0.814 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -5.188 3.351 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.154 4.154 3 Si 0.748 3.252 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.064 0.936 9 C 0.088 3.912 10 N -0.311 5.311 11 C 0.067 3.933 12 C -0.101 4.101 13 C -0.216 4.216 14 C -0.238 4.238 15 C -0.115 4.115 16 O -0.091 6.091 17 C 0.310 3.690 18 O -0.460 6.460 19 C 0.025 3.975 20 C -0.794 4.794 21 S 2.680 3.320 22 O -0.975 6.975 23 O -0.961 6.961 24 C -0.707 4.707 25 C -0.146 4.146 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.250 0.750 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.204 0.796 38 H 0.149 0.851 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.680 -5.561 4.073 8.332 hybrid contribution 0.334 0.596 -1.494 1.643 sum -4.346 -4.965 2.579 7.084 Atomic orbital electron populations 1.69924 1.06249 1.28509 1.48634 1.25223 0.95326 1.00612 0.94201 0.86146 0.79130 0.80696 0.79213 1.20955 1.20031 1.18995 1.21486 0.93061 0.91388 1.53222 0.93582 1.20490 0.88008 0.81622 1.01091 1.48327 1.39937 1.30620 1.12223 1.19893 0.98519 0.85631 0.89263 1.22981 0.98148 0.88576 1.00363 1.21929 0.94932 0.99409 1.05369 1.22163 1.02381 0.95483 1.03795 1.24880 0.86447 0.96835 1.03346 1.84111 1.41915 1.23456 1.59661 1.19323 0.80550 0.83701 0.85404 1.90715 1.36131 1.34612 1.84533 1.20849 0.96706 0.88969 0.91024 1.32972 1.05280 1.18369 1.22736 1.05425 0.78413 0.74926 0.73250 1.93529 1.53573 1.64043 1.86321 1.93544 1.87918 1.58979 1.55655 1.30174 1.15018 1.11085 1.14393 1.21511 1.01466 0.98118 0.93461 1.21628 0.90521 1.06078 1.00392 0.91750 0.94699 0.90193 0.85294 0.90413 0.82236 0.80653 0.74960 0.83138 0.82988 0.79611 0.85059 0.88851 0.87744 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -40.72 13.29 21.45 0.28 -40.43 16 2 C 0.05 2.23 4.99 84.65 0.42 2.65 16 3 Si 0.92 36.97 29.54 68.60 2.03 38.99 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -24.86 6.74 25.60 0.17 -24.68 16 8 H 0.05 2.23 7.81 -2.91 -0.02 2.20 16 9 C 0.21 8.39 4.78 85.63 0.41 8.80 16 10 N -0.58 -23.15 2.56 -834.78 -2.14 -25.29 16 11 C 0.19 6.74 5.88 85.63 0.50 7.24 16 12 C -0.05 -1.68 6.86 24.83 0.17 -1.51 16 13 C -0.20 -5.63 10.81 22.19 0.24 -5.40 16 14 C -0.22 -5.30 10.91 22.19 0.24 -5.06 16 15 C -0.05 -1.21 12.09 66.97 0.81 -0.40 16 16 O -0.20 -6.79 10.65 -2.45 -0.03 -6.82 16 17 C 0.52 22.42 6.98 86.57 0.60 23.02 16 18 O -0.58 -27.85 15.86 -4.08 -0.06 -27.92 16 19 C 0.03 1.07 4.96 -18.22 -0.09 0.98 16 20 C -0.69 -25.48 9.33 67.68 0.63 -24.85 16 21 S 2.50 75.88 5.58 -56.49 -0.32 75.56 16 22 O -0.98 -36.11 17.96 -127.70 -2.29 -38.40 16 23 O -0.96 -32.93 17.96 -127.70 -2.29 -35.23 16 24 C -0.57 -11.96 6.58 72.19 0.48 -11.48 16 25 C -0.11 -2.36 5.85 30.56 0.18 -2.18 16 26 C -0.15 -4.71 3.34 29.06 0.10 -4.61 16 27 H 0.27 11.93 8.31 -92.71 -0.77 11.16 16 28 H 0.03 1.47 7.83 -2.39 -0.02 1.46 16 29 H 0.08 3.10 3.53 -2.40 -0.01 3.09 16 30 H 0.13 4.01 7.90 -2.39 -0.02 3.99 16 31 H 0.08 2.89 7.54 -2.39 -0.02 2.88 16 32 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.23 3.74 8.06 -2.91 -0.02 3.71 16 35 H 0.15 6.06 7.42 -2.91 -0.02 6.03 16 36 H 0.15 3.21 8.12 -2.39 -0.02 3.19 16 37 H 0.19 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 40 H 0.10 3.16 6.60 -2.39 -0.02 3.15 16 41 H 0.16 5.51 4.16 -2.39 -0.01 5.50 16 Total: -1.00 -69.40 352.56 1.12 -68.29 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.07 Total: 28.70 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 4.87 Total: -37.47 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.85 Total: -65.72 kcal Atomic # 8 Polarization: -103.68 SS G_CDS: -4.68 Total: -108.36 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 75.88 SS G_CDS: -0.32 Total: 75.56 kcal Total: -69.40 1.12 -68.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442500199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.091 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds