Wall clock time and date at job start Tue Mar 31 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47019 * 274.65876 * 3 2 1 5 5 H 1.48490 * 109.47255 * 34.65931 * 3 2 1 6 6 H 1.48501 * 109.47070 * 154.66057 * 3 2 1 7 7 C 1.40030 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00487 * 196.76517 * 7 2 1 9 9 C 1.41550 * 119.99845 * 16.76467 * 7 2 1 10 10 C 1.41179 * 120.99428 * 203.67730 * 9 7 2 11 11 C 1.37586 * 119.02090 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.10901 * 359.97438 * 11 10 9 13 13 C 1.32487 * 122.23254 * 0.02562 * 12 11 10 14 14 N 1.39387 * 119.58375 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00017 * 5.18886 * 14 13 12 16 16 O 1.21600 * 119.99991 * 355.12611 * 15 14 13 17 17 C 1.47486 * 120.00056 * 175.13342 * 15 14 13 18 18 C 1.36618 * 125.77367 * 179.97438 * 17 15 14 19 19 N 1.34811 * 106.83566 * 179.97438 * 18 17 15 20 20 C 1.46507 * 126.59104 * 180.26061 * 19 18 17 21 21 F 1.39901 * 109.46832 * 299.70905 * 20 19 18 22 22 F 1.39898 * 109.47020 * 59.70787 * 20 19 18 23 23 C 1.53005 * 109.46996 * 179.71161 * 20 19 18 24 24 O 1.42900 * 109.47105 * 59.99936 * 23 20 19 25 25 N 1.40203 * 106.81699 * 359.97438 * 19 18 17 26 26 N 1.28760 * 108.37168 * 359.97438 * 25 19 18 27 27 C 1.38619 * 120.83230 * 0.27512 * 13 12 11 28 28 H 0.97008 * 119.99711 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.48996 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.44386 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00095 * 185.18059 * 14 13 12 32 32 H 1.08001 * 126.58187 * 0.02562 * 18 17 15 33 33 H 1.08993 * 109.46776 * 179.97438 * 23 20 19 34 34 H 1.09003 * 109.46626 * 299.99962 * 23 20 19 35 35 H 0.96705 * 113.99700 * 180.02562 * 24 23 20 36 36 H 1.07999 * 120.59966 * 179.70423 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3905 2.1032 -1.3954 5 1 1.4917 2.6222 0.7962 6 1 3.5848 1.4137 0.5992 7 6 2.0076 -1.2127 0.0005 8 1 3.0531 -1.2326 0.2703 9 6 1.3449 -2.4126 -0.3525 10 6 1.8225 -3.6647 0.0916 11 6 1.1465 -4.8054 -0.2754 12 7 0.0650 -4.7444 -1.0312 13 6 -0.4238 -3.5953 -1.4738 14 7 -1.5687 -3.5952 -2.2688 15 6 -2.2312 -4.7466 -2.4966 16 8 -1.7822 -5.7983 -2.0831 17 6 -3.5005 -4.7310 -3.2474 18 6 -4.2659 -5.8229 -3.5449 19 7 -5.3328 -5.3750 -4.2366 20 6 -6.4335 -6.1847 -4.7651 21 9 -5.9285 -7.1238 -5.6708 22 9 -7.0714 -6.8488 -3.7119 23 6 -7.4376 -5.2769 -5.4784 24 8 -6.7860 -4.5986 -6.5542 25 7 -5.1900 -3.9847 -4.3473 26 7 -4.1010 -3.6400 -3.7530 27 6 0.1925 -2.3936 -1.1614 28 1 -0.4850 0.8401 -0.0004 29 1 2.7052 -3.7262 0.7111 30 1 1.5061 -5.7669 0.0602 31 1 -1.8888 -2.7664 -2.6581 32 1 -4.0568 -6.8479 -3.2766 33 1 -8.2563 -5.8794 -5.8719 34 1 -7.8310 -4.5453 -4.7726 35 1 -7.3640 -4.0040 -7.0517 36 1 -0.2065 -1.4595 -1.5281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465813998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:28 Heat of formation + Delta-G solvation = -23.058566 kcal Electronic energy + Delta-G solvation = -28131.502184 eV Core-core repulsion = 23483.131550 eV Total energy + Delta-G solvation = -4648.370634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.01295 -48.10657 -42.38131 -39.43472 -37.74826 -37.56649 -34.53552 -34.28061 -33.68392 -31.35725 -30.54042 -29.72994 -28.42266 -25.99492 -25.06011 -23.98997 -22.17755 -21.96029 -21.30629 -20.07558 -19.26920 -19.06891 -17.76831 -17.62975 -17.38138 -16.90857 -15.88149 -15.73679 -15.47485 -15.23022 -15.13620 -14.79680 -14.41544 -14.31198 -14.27375 -14.21292 -14.13727 -13.84517 -13.71362 -12.86948 -12.60664 -12.46713 -12.30765 -12.17692 -11.63130 -11.43934 -11.22250 -11.19851 -10.95119 -10.89579 -10.30069 -10.16054 -9.80530 -9.66336 -9.50349 -9.34955 -8.00456 -7.76703 -7.03849 -6.80655 -4.60216 0.72676 1.03555 1.64112 2.37934 2.71429 2.80226 3.03252 3.03763 3.07279 3.25165 3.44181 3.53160 3.73298 3.86302 3.92468 4.20855 4.31550 4.56257 4.62645 4.67999 4.77304 4.88763 5.50977 5.68679 5.73304 5.99727 6.57296 6.64868 6.80607 6.82428 6.95449 7.11141 7.37375 7.44317 7.57845 7.79455 7.93785 8.19554 8.39664 8.67830 8.74869 8.81335 9.67242 10.07499 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002476 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.499724 B =11307.949943 C =12427.014930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.284 4.284 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.336 3.664 14 N -0.639 5.639 15 C 0.587 3.413 16 O -0.474 6.474 17 C -0.079 4.079 18 C 0.105 3.895 19 N -0.421 5.421 20 C 0.529 3.471 21 F -0.160 7.160 22 F -0.161 7.161 23 C 0.059 3.941 24 O -0.543 6.543 25 N -0.017 5.017 26 N -0.188 5.188 27 C -0.238 4.238 28 H 0.283 0.717 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.416 0.584 32 H 0.210 0.790 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.023 -6.395 -10.940 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.034 4.034 12 N -0.276 5.276 13 C 0.112 3.888 14 N -0.284 5.284 15 C 0.369 3.631 16 O -0.343 6.343 17 C -0.215 4.215 18 C -0.047 4.047 19 N -0.216 5.216 20 C 0.411 3.589 21 F -0.142 7.142 22 F -0.142 7.142 23 C -0.022 4.022 24 O -0.351 6.351 25 N 0.002 4.998 26 N -0.065 5.065 27 C -0.264 4.264 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.252 0.748 32 H 0.226 0.774 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.524 -6.976 -11.203 21.937 hybrid contribution 0.387 1.062 0.321 1.175 sum -17.136 -5.914 -10.882 21.144 Atomic orbital electron populations 1.69780 1.07684 1.29507 1.34004 1.25972 0.94777 1.01530 0.91910 0.86233 0.80575 0.80306 0.79261 1.19200 1.20195 1.18463 1.19594 0.97902 0.90647 1.40407 0.89885 1.17567 0.89806 0.92341 0.86815 1.21893 1.05240 0.93869 1.09750 1.21747 0.90849 0.96856 0.93992 1.67193 1.15624 1.26461 1.18311 1.18113 0.87004 0.90999 0.92696 1.43136 1.25637 1.10506 1.49125 1.16783 0.81517 0.84956 0.79849 1.90909 1.65586 1.29729 1.48112 1.21853 1.01260 0.88753 1.09662 1.23498 0.86561 1.02201 0.92423 1.51370 1.18461 1.09853 1.41884 1.19867 0.81426 0.80429 0.77214 1.93208 1.88122 1.66518 1.66304 1.93205 1.80914 1.81575 1.58467 1.22737 0.91388 0.96010 0.92024 1.86520 1.40439 1.62756 1.45359 1.82131 1.13437 0.85545 1.18675 1.74696 1.01432 1.25002 1.05362 1.21553 1.02347 0.95526 1.06943 0.90614 0.87924 0.85791 0.74795 0.77354 0.88689 0.88783 0.75037 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.48 10.93 55.55 0.61 -18.88 16 2 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 3 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.68 9.12 -37.65 -0.34 -12.03 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 10 C -0.28 -6.96 9.90 -38.70 -0.38 -7.34 16 11 C 0.12 2.87 11.15 -17.68 -0.20 2.67 16 12 N -0.56 -14.26 7.85 -12.54 -0.10 -14.36 16 13 C 0.34 8.32 7.41 -154.76 -1.15 7.17 16 14 N -0.64 -13.46 5.38 -12.45 -0.07 -13.52 16 15 C 0.59 11.78 7.78 -12.49 -0.10 11.68 16 16 O -0.47 -10.81 15.12 5.28 0.08 -10.73 16 17 C -0.08 -1.29 6.99 -83.56 -0.58 -1.87 16 18 C 0.11 1.40 11.23 -16.83 -0.19 1.21 16 19 N -0.42 -5.09 3.81 -59.61 -0.23 -5.31 16 20 C 0.53 4.70 2.55 -4.03 -0.01 4.69 16 21 F -0.16 -1.57 17.16 2.25 0.04 -1.53 16 22 F -0.16 -1.35 17.21 2.25 0.04 -1.31 16 23 C 0.06 0.32 6.37 37.16 0.24 0.56 16 24 O -0.54 -3.66 12.68 -35.23 -0.45 -4.11 16 25 N -0.02 -0.24 12.19 60.35 0.74 0.50 16 26 N -0.19 -2.98 12.04 32.84 0.40 -2.59 16 27 C -0.24 -6.13 8.62 -38.47 -0.33 -6.46 16 28 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 29 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 31 H 0.42 7.79 8.39 -40.82 -0.34 7.45 16 32 H 0.21 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 0.63 9.12 45.56 0.42 1.04 16 36 H 0.13 3.31 6.20 -52.49 -0.33 2.98 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -33.70 337.56 -4.54 -38.24 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -1.92 Total: 10.30 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -3.73 Total: 5.26 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 1.35 Total: -54.16 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.37 Total: -14.83 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.70 -4.54 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.178 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds