Wall clock time and date at job start Tue Mar 31 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47019 * 274.65876 * 3 2 1 5 5 H 1.48490 * 109.47255 * 34.65931 * 3 2 1 6 6 H 1.48501 * 109.47070 * 154.66057 * 3 2 1 7 7 C 1.40030 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00487 * 196.76517 * 7 2 1 9 9 C 1.41550 * 119.99845 * 16.76467 * 7 2 1 10 10 C 1.41179 * 120.99428 * 203.67730 * 9 7 2 11 11 C 1.37586 * 119.02090 * 179.97438 * 10 9 7 12 12 N 1.32081 * 121.10901 * 359.97438 * 11 10 9 13 13 C 1.32487 * 122.23254 * 0.02562 * 12 11 10 14 14 N 1.39387 * 119.58375 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00017 * 5.18886 * 14 13 12 16 16 O 1.21600 * 119.99991 * 355.12611 * 15 14 13 17 17 C 1.47486 * 120.00056 * 175.13342 * 15 14 13 18 18 C 1.36618 * 125.77367 * 179.97438 * 17 15 14 19 19 N 1.34811 * 106.83566 * 179.97438 * 18 17 15 20 20 C 1.46507 * 126.59104 * 180.26061 * 19 18 17 21 21 F 1.39901 * 109.46832 * 299.70905 * 20 19 18 22 22 F 1.39898 * 109.47020 * 59.70787 * 20 19 18 23 23 C 1.53005 * 109.46996 * 179.71161 * 20 19 18 24 24 O 1.42900 * 109.47105 * 59.99936 * 23 20 19 25 25 N 1.40203 * 106.81699 * 359.97438 * 19 18 17 26 26 N 1.28760 * 108.37168 * 359.97438 * 25 19 18 27 27 C 1.38619 * 120.83230 * 0.27512 * 13 12 11 28 28 H 0.97008 * 119.99711 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.48996 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.44386 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00095 * 185.18059 * 14 13 12 32 32 H 1.08001 * 126.58187 * 0.02562 * 18 17 15 33 33 H 1.08993 * 109.46776 * 179.97438 * 23 20 19 34 34 H 1.09003 * 109.46626 * 299.99962 * 23 20 19 35 35 H 0.96705 * 113.99700 * 180.02562 * 24 23 20 36 36 H 1.07999 * 120.59966 * 179.70423 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3905 2.1032 -1.3954 5 1 1.4917 2.6222 0.7962 6 1 3.5848 1.4137 0.5992 7 6 2.0076 -1.2127 0.0005 8 1 3.0531 -1.2326 0.2703 9 6 1.3449 -2.4126 -0.3525 10 6 1.8225 -3.6647 0.0916 11 6 1.1465 -4.8054 -0.2754 12 7 0.0650 -4.7444 -1.0312 13 6 -0.4238 -3.5953 -1.4738 14 7 -1.5687 -3.5952 -2.2688 15 6 -2.2312 -4.7466 -2.4966 16 8 -1.7822 -5.7983 -2.0831 17 6 -3.5005 -4.7310 -3.2474 18 6 -4.2659 -5.8229 -3.5449 19 7 -5.3328 -5.3750 -4.2366 20 6 -6.4335 -6.1847 -4.7651 21 9 -5.9285 -7.1238 -5.6708 22 9 -7.0714 -6.8488 -3.7119 23 6 -7.4376 -5.2769 -5.4784 24 8 -6.7860 -4.5986 -6.5542 25 7 -5.1900 -3.9847 -4.3473 26 7 -4.1010 -3.6400 -3.7530 27 6 0.1925 -2.3936 -1.1614 28 1 -0.4850 0.8401 -0.0004 29 1 2.7052 -3.7262 0.7111 30 1 1.5061 -5.7669 0.0602 31 1 -1.8888 -2.7664 -2.6581 32 1 -4.0568 -6.8479 -3.2766 33 1 -8.2563 -5.8794 -5.8719 34 1 -7.8310 -4.5453 -4.7726 35 1 -7.3640 -4.0040 -7.0517 36 1 -0.2065 -1.4595 -1.5281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465813998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:28 Heat of formation + Delta-G solvation = -48.994796 kcal Electronic energy + Delta-G solvation = -28132.626863 eV Core-core repulsion = 23483.131550 eV Total energy + Delta-G solvation = -4649.495313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.71482 -48.81275 -43.51565 -41.15771 -39.47577 -38.07829 -36.19651 -35.68027 -35.22718 -32.61986 -32.35117 -30.78367 -29.88663 -27.91637 -25.88798 -25.40360 -23.85160 -23.13886 -22.86568 -21.45528 -20.39917 -19.75237 -19.47564 -18.71649 -18.01529 -17.94123 -17.40279 -17.06339 -17.03795 -16.46184 -16.07207 -15.93887 -15.88774 -15.67174 -15.45256 -15.36147 -15.13387 -15.04339 -14.65729 -14.38365 -14.35496 -14.16155 -13.61524 -13.18566 -12.93271 -12.78429 -12.72660 -12.65531 -12.29682 -12.10558 -11.89563 -11.57282 -11.38075 -11.30456 -11.16225 -10.69531 -9.95973 -9.67250 -8.90013 -8.64960 -6.55830 -0.34832 0.14698 0.28100 0.92850 1.00315 1.42254 1.56018 1.58397 1.79275 1.90509 2.15709 2.20988 2.43225 2.80367 2.81292 2.89411 3.31367 3.59504 3.74770 3.76295 3.81229 4.01643 4.13498 4.22120 4.41093 4.73762 4.75871 4.80448 4.92561 5.06643 5.22521 5.47693 5.59074 5.89412 6.06283 6.35602 6.52988 6.55341 6.68514 6.79049 6.83064 7.09167 7.78403 8.26575 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002476 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.499724 B =11307.949943 C =12427.014930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.087 0.913 9 C 0.114 3.886 10 C -0.296 4.296 11 C 0.116 3.884 12 N -0.578 5.578 13 C 0.333 3.667 14 N -0.639 5.639 15 C 0.591 3.409 16 O -0.506 6.506 17 C -0.101 4.101 18 C 0.122 3.878 19 N -0.414 5.414 20 C 0.519 3.481 21 F -0.165 7.165 22 F -0.156 7.156 23 C 0.061 3.939 24 O -0.570 6.570 25 N -0.009 5.009 26 N -0.206 5.206 27 C -0.258 4.258 28 H 0.293 0.707 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.424 0.576 32 H 0.234 0.766 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.419 0.581 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 -6.120 -11.656 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.105 0.895 9 C 0.106 3.894 10 C -0.320 4.320 11 C -0.037 4.037 12 N -0.298 5.298 13 C 0.108 3.892 14 N -0.284 5.284 15 C 0.375 3.625 16 O -0.377 6.377 17 C -0.238 4.238 18 C -0.031 4.031 19 N -0.208 5.208 20 C 0.403 3.597 21 F -0.146 7.146 22 F -0.137 7.137 23 C -0.019 4.019 24 O -0.382 6.382 25 N 0.009 4.991 26 N -0.083 5.083 27 C -0.283 4.283 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.172 0.828 31 H 0.261 0.739 32 H 0.250 0.750 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.274 0.726 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.859 -6.703 -11.952 23.312 hybrid contribution 0.661 0.896 0.505 1.223 sum -18.198 -5.806 -11.448 22.270 Atomic orbital electron populations 1.69821 1.09142 1.31082 1.33501 1.26859 0.95538 1.04724 0.90787 0.85091 0.79132 0.75447 0.79467 1.18623 1.19196 1.18008 1.19892 0.98296 0.91553 1.41480 0.89537 1.18000 0.90471 0.93546 0.87363 1.22095 1.06021 0.93581 1.10288 1.22254 0.90246 0.98084 0.93149 1.67320 1.16480 1.26747 1.19261 1.18314 0.87678 0.90643 0.92538 1.43150 1.24914 1.11547 1.48798 1.17132 0.82199 0.83972 0.79210 1.90874 1.66775 1.30515 1.49531 1.21313 1.00711 0.90214 1.11517 1.23834 0.85956 1.02438 0.90845 1.51678 1.18761 1.09552 1.40849 1.20579 0.80968 0.80837 0.77286 1.93201 1.88290 1.66765 1.66380 1.93215 1.80481 1.81537 1.58471 1.22953 0.90613 0.96281 0.92020 1.86455 1.42186 1.63592 1.45937 1.82047 1.12500 0.86590 1.17913 1.74682 1.02153 1.25387 1.06045 1.21516 1.03115 0.95603 1.08077 0.89645 0.86325 0.82761 0.73876 0.74999 0.84792 0.87723 0.72624 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.60 10.93 21.84 0.24 -40.36 16 2 C 0.04 1.86 5.20 85.29 0.44 2.30 16 3 Si 0.99 36.38 29.59 68.60 2.03 38.41 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -25.11 9.12 23.52 0.21 -24.90 16 8 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.11 6.19 5.60 -21.11 -0.12 6.07 16 10 C -0.30 -14.72 9.90 22.84 0.23 -14.50 16 11 C 0.12 5.61 11.15 84.50 0.94 6.55 16 12 N -0.58 -30.09 7.85 -193.57 -1.52 -31.61 16 13 C 0.33 16.97 7.41 132.78 0.98 17.96 16 14 N -0.64 -27.65 5.38 -311.57 -1.68 -29.33 16 15 C 0.59 24.08 7.78 86.68 0.67 24.75 16 16 O -0.51 -23.35 15.12 -4.03 -0.06 -23.41 16 17 C -0.10 -3.28 6.99 40.81 0.29 -3.00 16 18 C 0.12 3.10 11.23 83.86 0.94 4.04 16 19 N -0.41 -9.29 3.81 -342.50 -1.30 -10.60 16 20 C 0.52 8.01 2.55 86.38 0.22 8.23 16 21 F -0.17 -2.89 17.16 44.97 0.77 -2.12 16 22 F -0.16 -2.25 17.21 44.97 0.77 -1.47 16 23 C 0.06 0.48 6.37 71.98 0.46 0.94 16 24 O -0.57 -6.31 12.68 -148.98 -1.89 -8.20 16 25 N -0.01 -0.25 12.19 37.02 0.45 0.20 16 26 N -0.21 -6.45 12.04 -50.01 -0.60 -7.06 16 27 C -0.26 -13.68 8.62 22.99 0.20 -13.48 16 28 H 0.29 13.14 8.29 -92.70 -0.77 12.37 16 29 H 0.12 5.34 8.06 -2.91 -0.02 5.31 16 30 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 31 H 0.42 16.47 8.39 -92.71 -0.78 15.69 16 32 H 0.23 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.42 0.30 9.12 -74.05 -0.68 -0.37 16 36 H 0.12 6.49 6.20 -2.91 -0.02 6.47 16 Total: -1.00 -73.60 337.56 2.43 -71.17 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.25 Total: 29.40 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.47 Total: 14.97 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -4.41 Total: -118.75 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.95 Total: -31.61 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 1.55 Total: -3.59 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -73.60 2.43 -71.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465813998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.173 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds