Wall clock time and date at job start Tue Mar 31 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48498 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46877 * 299.99707 * 3 2 1 6 6 H 1.48492 * 109.47143 * 59.99857 * 3 2 1 7 7 C 1.40033 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 189.79955 * 7 2 1 9 9 C 1.41541 * 119.99877 * 9.81302 * 7 2 1 10 10 C 1.41168 * 121.00182 * 26.32915 * 9 7 2 11 11 C 1.36584 * 119.13099 * 180.26085 * 10 9 7 12 12 N 1.32076 * 121.25974 * 359.77334 * 11 10 9 13 13 C 1.32495 * 122.22526 * 0.02562 * 12 11 10 14 14 N 1.39455 * 119.64392 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00196 * 354.62295 * 14 13 12 16 16 O 1.21577 * 119.99742 * 354.94856 * 15 14 13 17 17 N 1.34770 * 119.99814 * 174.94684 * 15 14 13 18 18 C 1.46508 * 119.99882 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47263 * 179.97438 * 18 17 15 20 20 N 1.31136 * 126.54923 * 89.71025 * 19 18 17 21 21 C 1.34496 * 105.61522 * 179.97438 * 20 19 18 22 22 C 1.50696 * 126.28886 * 180.13235 * 21 20 19 23 23 F 1.39895 * 109.46860 * 300.23152 * 22 21 20 24 24 F 1.39892 * 109.47449 * 60.23350 * 22 21 20 25 25 N 1.29951 * 107.42236 * 0.35120 * 21 20 19 26 26 O 1.21303 * 110.24950 * 359.77837 * 25 21 20 27 27 C 1.38643 * 120.70434 * 359.97438 * 13 12 11 28 28 H 0.96992 * 120.00459 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.43038 * 0.03236 * 10 9 7 30 30 H 1.08000 * 119.37113 * 179.79087 * 11 10 9 31 31 H 0.97003 * 119.99807 * 174.62556 * 14 13 12 32 32 H 0.97005 * 120.00773 * 359.97438 * 17 15 14 33 33 H 1.09006 * 109.46956 * 299.99948 * 18 17 15 34 34 H 1.09002 * 109.46779 * 59.99920 * 18 17 15 35 35 H 1.09007 * 109.47224 * 180.23815 * 22 21 20 36 36 H 1.07997 * 120.65978 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0077 -1.2127 0.0005 8 1 3.0759 -1.2193 0.1597 9 6 1.3156 -2.4296 -0.2078 10 6 0.1069 -2.4631 -0.9364 11 6 -0.5319 -3.6578 -1.1099 12 7 -0.0379 -4.7777 -0.6136 13 6 1.0940 -4.8066 0.0746 14 7 1.5668 -6.0198 0.5739 15 6 0.8214 -7.1359 0.4502 16 8 -0.3006 -7.0692 -0.0132 17 7 1.3199 -8.3257 0.8403 18 6 0.5098 -9.5390 0.7053 19 6 1.2926 -10.7243 1.2088 20 7 1.3122 -11.1823 2.4374 21 6 2.1403 -12.2418 2.4156 22 6 2.4971 -13.1192 3.5877 23 9 3.0953 -12.3431 4.5861 24 9 1.3375 -13.7164 4.0933 25 7 2.5799 -12.3671 1.1991 26 8 2.1049 -11.5050 0.4902 27 6 1.8138 -3.6438 0.3025 28 1 -0.4850 0.8399 0.0004 29 1 -0.3091 -1.5554 -1.3480 30 1 -1.4587 -3.6875 -1.6637 31 1 2.4322 -6.0604 1.0104 32 1 2.2152 -8.3790 1.2097 33 1 -0.4044 -9.4323 1.2892 34 1 0.2554 -9.6911 -0.3436 35 1 3.1929 -13.8933 3.2636 36 1 2.7365 -3.6683 0.8632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476947102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:34 Heat of formation + Delta-G solvation = -5.201439 kcal Electronic energy + Delta-G solvation = -27160.420225 eV Core-core repulsion = 22512.823935 eV Total energy + Delta-G solvation = -4647.596290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.69886 -47.71885 -46.41215 -40.03690 -38.19314 -36.73395 -35.53861 -34.46448 -33.67463 -32.99073 -30.68312 -29.13272 -28.49420 -27.38911 -26.01572 -24.27314 -22.74526 -22.01337 -21.73615 -20.39149 -19.03301 -18.96072 -18.30335 -18.02921 -17.75864 -17.72292 -17.11475 -16.33461 -15.63310 -15.46108 -14.89930 -14.84097 -14.56942 -14.23795 -14.08853 -14.04795 -13.93009 -13.61632 -13.48563 -13.07553 -12.98121 -12.57245 -12.42452 -12.32144 -12.24168 -11.83213 -11.45988 -11.25980 -11.02046 -11.00395 -10.39599 -10.11038 -9.84727 -9.70152 -9.45108 -9.25802 -8.03581 -7.79375 -7.08441 -6.78541 -4.65558 0.25257 1.24224 1.94351 2.21030 2.65838 2.73432 2.78783 2.98886 3.01323 3.06071 3.19123 3.29090 3.67890 3.83703 3.95889 4.15214 4.17441 4.30728 4.65315 4.68093 4.91612 5.16527 5.18029 5.66683 5.86835 6.14064 6.41199 6.52623 6.72646 6.89158 7.00554 7.13119 7.27942 7.39314 7.49068 7.86423 7.97412 8.18749 8.44780 8.69488 8.72538 8.92454 9.67023 10.07603 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.001837 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.148756 B =15236.987860 C =15843.007239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.221 4.221 11 C 0.104 3.896 12 N -0.553 5.553 13 C 0.364 3.636 14 N -0.665 5.665 15 C 0.700 3.300 16 O -0.523 6.523 17 N -0.754 5.754 18 C 0.238 3.762 19 C 0.184 3.816 20 N -0.437 5.437 21 C 0.088 3.912 22 C 0.380 3.620 23 F -0.178 7.178 24 F -0.179 7.179 25 N -0.342 5.342 26 O 0.110 5.890 27 C -0.303 4.303 28 H 0.282 0.718 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.404 0.596 32 H 0.396 0.604 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -20.118 3.709 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.137 3.863 10 C -0.245 4.245 11 C -0.046 4.046 12 N -0.272 5.272 13 C 0.135 3.865 14 N -0.313 5.313 15 C 0.399 3.601 16 O -0.393 6.393 17 N -0.416 5.416 18 C 0.112 3.888 19 C -0.037 4.037 20 N -0.170 5.170 21 C -0.186 4.186 22 C 0.324 3.676 23 F -0.159 7.159 24 F -0.160 7.160 25 N -0.042 5.042 26 O 0.042 5.958 27 C -0.330 4.330 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.239 0.761 32 H 0.230 0.770 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.687 -21.401 3.391 22.170 hybrid contribution 1.592 1.614 0.716 2.377 sum 6.279 -19.788 4.106 21.162 Atomic orbital electron populations 1.69752 1.07580 1.29340 1.34872 1.25975 0.94883 1.01542 0.92031 0.86141 0.80734 0.80492 0.78662 1.18369 1.19624 1.19849 1.19600 0.95809 0.89964 1.43106 0.90089 1.17608 0.90890 0.91456 0.86339 1.22090 0.99585 0.98332 1.04446 1.21623 0.97946 0.87996 0.97032 1.67152 1.13000 1.30204 1.16872 1.17713 0.92125 0.82471 0.94165 1.42493 1.21804 1.06056 1.60955 1.15854 0.84969 0.79552 0.79711 1.91061 1.16926 1.84075 1.47199 1.45028 1.19534 1.05379 1.71611 1.19469 0.90940 0.74868 1.03570 1.28977 0.92902 0.96660 0.85139 1.71990 1.17617 1.08319 1.19045 1.26419 0.98655 0.98115 0.95390 1.19193 0.82729 0.86815 0.78863 1.93097 1.83115 1.77163 1.62534 1.93091 1.51544 1.83358 1.87971 1.74653 1.17013 1.08931 1.03594 1.85375 1.44085 1.29890 1.36475 1.21175 1.05074 0.92325 1.14386 0.90659 0.85056 0.85921 0.76145 0.77028 0.86296 0.87016 0.83668 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.56 10.70 55.55 0.59 -18.97 16 2 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.92 17.76 29.57 -169.99 -5.03 12.73 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.40 9.13 -37.65 -0.34 -11.75 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 9 C 0.15 3.74 5.60 -106.55 -0.60 3.14 16 10 C -0.22 -5.63 8.73 -39.07 -0.34 -5.97 16 11 C 0.10 2.54 11.10 -18.04 -0.20 2.34 16 12 N -0.55 -13.69 7.89 -12.76 -0.10 -13.79 16 13 C 0.36 8.21 7.41 -154.68 -1.15 7.07 16 14 N -0.67 -11.48 5.40 -15.86 -0.09 -11.57 16 15 C 0.70 11.66 8.51 -86.92 -0.74 10.92 16 16 O -0.52 -11.05 14.64 5.30 0.08 -10.97 16 17 N -0.75 -8.31 5.55 -66.41 -0.37 -8.68 16 18 C 0.24 2.16 6.30 -5.19 -0.03 2.13 16 19 C 0.18 1.65 7.88 -13.05 -0.10 1.54 16 20 N -0.44 -4.64 11.55 -9.87 -0.11 -4.75 16 21 C 0.09 0.83 7.65 -156.37 -1.20 -0.36 16 22 C 0.38 2.72 5.86 36.00 0.21 2.93 16 23 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 24 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 25 N -0.34 -3.18 12.16 30.90 0.38 -2.81 16 26 O 0.11 0.97 11.31 18.12 0.20 1.18 16 27 C -0.30 -7.05 9.74 -38.46 -0.37 -7.43 16 28 H 0.28 6.32 8.29 -40.82 -0.34 5.99 16 29 H 0.13 3.39 6.11 -52.49 -0.32 3.07 16 30 H 0.12 2.68 8.06 -52.49 -0.42 2.26 16 31 H 0.40 5.29 8.72 -40.82 -0.36 4.94 16 32 H 0.40 3.39 8.48 -40.82 -0.35 3.05 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.15 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -32.94 337.97 -6.91 -39.86 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -2.68 Total: 9.49 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -4.96 Total: 6.25 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.30 Total: -60.57 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.28 Total: -9.79 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.94 -6.91 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476947102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.654 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds