Wall clock time and date at job start Tue Mar 31 2020 22:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48498 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46877 * 299.99707 * 3 2 1 6 6 H 1.48492 * 109.47143 * 59.99857 * 3 2 1 7 7 C 1.40033 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 189.79955 * 7 2 1 9 9 C 1.41541 * 119.99877 * 9.81302 * 7 2 1 10 10 C 1.41168 * 121.00182 * 26.32915 * 9 7 2 11 11 C 1.36584 * 119.13099 * 180.26085 * 10 9 7 12 12 N 1.32076 * 121.25974 * 359.77334 * 11 10 9 13 13 C 1.32495 * 122.22526 * 0.02562 * 12 11 10 14 14 N 1.39455 * 119.64392 * 180.02562 * 13 12 11 15 15 C 1.34781 * 120.00196 * 354.62295 * 14 13 12 16 16 O 1.21577 * 119.99742 * 354.94856 * 15 14 13 17 17 N 1.34770 * 119.99814 * 174.94684 * 15 14 13 18 18 C 1.46508 * 119.99882 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47263 * 179.97438 * 18 17 15 20 20 N 1.31136 * 126.54923 * 89.71025 * 19 18 17 21 21 C 1.34496 * 105.61522 * 179.97438 * 20 19 18 22 22 C 1.50696 * 126.28886 * 180.13235 * 21 20 19 23 23 F 1.39895 * 109.46860 * 300.23152 * 22 21 20 24 24 F 1.39892 * 109.47449 * 60.23350 * 22 21 20 25 25 N 1.29951 * 107.42236 * 0.35120 * 21 20 19 26 26 O 1.21303 * 110.24950 * 359.77837 * 25 21 20 27 27 C 1.38643 * 120.70434 * 359.97438 * 13 12 11 28 28 H 0.96992 * 120.00459 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.43038 * 0.03236 * 10 9 7 30 30 H 1.08000 * 119.37113 * 179.79087 * 11 10 9 31 31 H 0.97003 * 119.99807 * 174.62556 * 14 13 12 32 32 H 0.97005 * 120.00773 * 359.97438 * 17 15 14 33 33 H 1.09006 * 109.46956 * 299.99948 * 18 17 15 34 34 H 1.09002 * 109.46779 * 59.99920 * 18 17 15 35 35 H 1.09007 * 109.47224 * 180.23815 * 22 21 20 36 36 H 1.07997 * 120.65978 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0077 -1.2127 0.0005 8 1 3.0759 -1.2193 0.1597 9 6 1.3156 -2.4296 -0.2078 10 6 0.1069 -2.4631 -0.9364 11 6 -0.5319 -3.6578 -1.1099 12 7 -0.0379 -4.7777 -0.6136 13 6 1.0940 -4.8066 0.0746 14 7 1.5668 -6.0198 0.5739 15 6 0.8214 -7.1359 0.4502 16 8 -0.3006 -7.0692 -0.0132 17 7 1.3199 -8.3257 0.8403 18 6 0.5098 -9.5390 0.7053 19 6 1.2926 -10.7243 1.2088 20 7 1.3122 -11.1823 2.4374 21 6 2.1403 -12.2418 2.4156 22 6 2.4971 -13.1192 3.5877 23 9 3.0953 -12.3431 4.5861 24 9 1.3375 -13.7164 4.0933 25 7 2.5799 -12.3671 1.1991 26 8 2.1049 -11.5050 0.4902 27 6 1.8138 -3.6438 0.3025 28 1 -0.4850 0.8399 0.0004 29 1 -0.3091 -1.5554 -1.3480 30 1 -1.4587 -3.6875 -1.6637 31 1 2.4322 -6.0604 1.0104 32 1 2.2152 -8.3790 1.2097 33 1 -0.4044 -9.4323 1.2892 34 1 0.2554 -9.6911 -0.3436 35 1 3.1929 -13.8933 3.2636 36 1 2.7365 -3.6683 0.8632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476947102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:33 Heat of formation + Delta-G solvation = -29.315659 kcal Electronic energy + Delta-G solvation = -27161.465896 eV Core-core repulsion = 22512.823935 eV Total energy + Delta-G solvation = -4648.641962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.30365 -48.33682 -47.13661 -41.46728 -39.86127 -37.51790 -36.65646 -36.03588 -35.33349 -33.90539 -32.54565 -30.61125 -29.19498 -28.49130 -27.85925 -25.02298 -23.89963 -23.59278 -23.08503 -21.82799 -20.00526 -19.80381 -19.59625 -19.21297 -18.51903 -18.36182 -17.88309 -17.74431 -17.08930 -16.75407 -16.31366 -16.21498 -15.93386 -15.52510 -15.20024 -15.07122 -14.72496 -14.67651 -14.64234 -14.38466 -14.17647 -14.06881 -13.65094 -13.32481 -13.13701 -12.85826 -12.83097 -12.81527 -12.58276 -12.06233 -11.84789 -11.74108 -11.48408 -11.28031 -11.19203 -10.33168 -9.92252 -9.62647 -8.83979 -8.57396 -6.56050 -0.47901 0.49270 0.86103 1.00655 1.16441 1.42860 1.56176 1.57410 1.58188 1.72148 2.20963 2.22878 2.28877 2.83365 2.86633 3.11247 3.29009 3.59881 3.60733 3.79201 3.93415 4.14487 4.19465 4.43896 4.45437 4.73267 4.86463 4.97097 5.06416 5.13018 5.28519 5.53376 5.64118 5.78110 6.00227 6.25891 6.56380 6.56945 6.80152 6.85233 6.90343 7.53187 7.89367 8.30755 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.001837 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.148756 B =15236.987860 C =15843.007239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.117 3.883 10 C -0.242 4.242 11 C 0.099 3.901 12 N -0.574 5.574 13 C 0.366 3.634 14 N -0.656 5.656 15 C 0.702 3.298 16 O -0.568 6.568 17 N -0.731 5.731 18 C 0.240 3.760 19 C 0.197 3.803 20 N -0.462 5.462 21 C 0.082 3.918 22 C 0.377 3.623 23 F -0.189 7.189 24 F -0.189 7.189 25 N -0.343 5.343 26 O 0.114 5.886 27 C -0.312 4.312 28 H 0.291 0.709 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.424 0.576 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.192 0.808 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -20.874 4.172 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.108 3.892 10 C -0.266 4.266 11 C -0.051 4.051 12 N -0.294 5.294 13 C 0.136 3.864 14 N -0.306 5.306 15 C 0.402 3.598 16 O -0.442 6.442 17 N -0.392 5.392 18 C 0.114 3.886 19 C -0.024 4.024 20 N -0.195 5.195 21 C -0.192 4.192 22 C 0.322 3.678 23 F -0.170 7.170 24 F -0.170 7.170 25 N -0.043 5.043 26 O 0.046 5.954 27 C -0.338 4.338 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.262 0.738 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.208 0.792 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.303 -22.233 3.890 23.435 hybrid contribution 1.093 1.722 0.595 2.125 sum 7.395 -20.511 4.486 22.261 Atomic orbital electron populations 1.69814 1.09108 1.30790 1.34901 1.26891 0.95633 1.04846 0.90957 0.85013 0.79384 0.75615 0.78835 1.17735 1.18998 1.19230 1.19907 0.96270 0.90735 1.44181 0.89493 1.18024 0.91405 0.92861 0.86878 1.22042 1.00435 0.98277 1.05830 1.21892 0.98450 0.87833 0.96921 1.67278 1.14124 1.30147 1.17843 1.17931 0.91239 0.84176 0.93028 1.42303 1.22707 1.04897 1.60664 1.15896 0.84270 0.80390 0.79281 1.91039 1.18943 1.84947 1.49232 1.44683 1.20207 1.04259 1.70058 1.19557 0.90481 0.73897 1.04643 1.28725 0.92573 0.96350 0.84767 1.72000 1.18462 1.09227 1.19824 1.26851 0.98245 0.98042 0.96071 1.19778 0.82990 0.87196 0.77831 1.93070 1.83213 1.77707 1.63051 1.93066 1.52482 1.83409 1.88080 1.74647 1.17058 1.09000 1.03573 1.85373 1.43920 1.29805 1.36330 1.21366 1.05944 0.91955 1.14544 0.89854 0.86260 0.84354 0.73774 0.75183 0.86269 0.85459 0.79164 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.16 10.70 21.84 0.23 -40.93 16 2 C 0.03 1.57 5.31 85.29 0.45 2.02 16 3 Si 0.99 35.89 29.57 68.60 2.03 37.92 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.48 -24.32 9.13 23.52 0.21 -24.11 16 8 H 0.09 4.14 7.87 -2.91 -0.02 4.12 16 9 C 0.12 6.10 5.60 -21.11 -0.12 5.98 16 10 C -0.24 -12.69 8.73 22.60 0.20 -12.49 16 11 C 0.10 4.95 11.10 84.27 0.94 5.89 16 12 N -0.57 -28.62 7.89 -194.27 -1.53 -30.15 16 13 C 0.37 16.42 7.41 132.76 0.98 17.40 16 14 N -0.66 -21.79 5.40 -322.37 -1.74 -23.53 16 15 C 0.70 22.50 8.51 179.05 1.52 24.03 16 16 O -0.57 -23.75 14.64 -3.96 -0.06 -23.80 16 17 N -0.73 -14.67 5.55 -482.29 -2.68 -17.34 16 18 C 0.24 3.93 6.30 85.63 0.54 4.46 16 19 C 0.20 3.15 7.88 88.38 0.70 3.85 16 20 N -0.46 -9.09 11.55 -303.18 -3.50 -12.59 16 21 C 0.08 1.40 7.65 138.46 1.06 2.46 16 22 C 0.38 4.65 5.86 71.23 0.42 5.07 16 23 F -0.19 -3.08 17.32 44.97 0.78 -2.30 16 24 F -0.19 -3.04 17.32 44.97 0.78 -2.26 16 25 N -0.34 -5.68 12.16 -60.30 -0.73 -6.41 16 26 O 0.11 1.79 11.31 74.89 0.85 2.63 16 27 C -0.31 -14.48 9.74 23.00 0.22 -14.25 16 28 H 0.29 13.10 8.29 -92.71 -0.77 12.34 16 29 H 0.12 6.42 6.11 -2.91 -0.02 6.40 16 30 H 0.14 6.19 8.06 -2.91 -0.02 6.17 16 31 H 0.42 10.23 8.72 -92.71 -0.81 9.42 16 32 H 0.41 5.99 8.48 -92.70 -0.79 5.21 16 33 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.19 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -72.02 337.97 1.16 -70.86 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.39 Total: 27.60 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 7.13 Total: 20.30 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -9.95 Total: -130.95 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.79 Total: -21.17 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 1.56 Total: -4.56 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -72.02 1.16 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476947102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.540 kcal (2) G-P(sol) polarization free energy of solvation -72.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds