Wall clock time and date at job start Tue Mar 31 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47124 * 300.00174 * 3 2 1 6 6 H 1.48499 * 109.47022 * 60.00005 * 3 2 1 7 7 C 1.38951 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00175 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99491 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00146 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.47298 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00080 * 179.97438 * 13 12 10 15 15 O 1.21742 * 119.99922 * 5.16852 * 14 13 12 16 16 C 1.46321 * 120.00111 * 185.17373 * 14 13 12 17 17 C 1.38668 * 126.78166 * 260.74427 * 16 14 13 18 18 C 1.50691 * 125.91460 * 359.97438 * 17 16 14 19 19 F 1.39902 * 109.47345 * 300.00526 * 18 17 16 20 20 F 1.39899 * 109.46957 * 60.00073 * 18 17 16 21 21 N 1.32372 * 108.17382 * 180.02562 * 17 16 14 22 22 C 1.32860 * 109.74697 * 359.97438 * 21 17 16 23 23 C 1.40869 * 132.72260 * 179.97438 * 22 21 17 24 24 N 1.31185 * 119.76514 * 180.02562 * 23 22 21 25 25 C 1.33215 * 121.28250 * 359.97438 * 24 23 22 26 26 C 1.35407 * 121.07963 * 0.23453 * 25 24 23 27 27 N 1.36071 * 119.77808 * 359.54220 * 26 25 24 28 28 H 0.97000 * 119.99947 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00019 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47378 * 60.00018 * 12 10 9 31 31 H 1.09002 * 109.47430 * 300.00054 * 12 10 9 32 32 H 0.96998 * 119.99789 * 359.97438 * 13 12 10 33 33 H 1.09000 * 109.47736 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.11657 * 0.04547 * 23 22 21 35 35 H 1.07996 * 119.45579 * 180.02562 * 25 24 23 36 36 H 1.07999 * 120.11386 * 179.74473 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0017 15 8 0.5536 -7.4710 -0.0963 16 6 2.6925 -8.3576 0.1121 17 6 3.1867 -9.1368 -0.9231 18 6 2.8413 -8.9899 -2.3825 19 9 1.4646 -9.1684 -2.5562 20 9 3.2048 -7.7123 -2.8215 21 7 4.0135 -10.0326 -0.4072 22 6 4.0817 -9.8743 0.9101 23 6 4.7981 -10.5491 1.9180 24 7 4.6737 -10.1730 3.1686 25 6 3.8796 -9.1594 3.5103 26 6 3.1681 -8.4835 2.5774 27 7 3.2681 -8.8341 1.2664 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6174 -4.9205 -0.8914 31 1 0.6167 -4.9209 0.8886 32 1 3.1494 -5.7993 -0.0019 33 1 3.3804 -9.7402 -2.9609 34 1 5.4478 -11.3730 1.6619 35 1 3.7996 -8.8743 4.5489 36 1 2.5259 -7.6668 2.8723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520737886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:23 Heat of formation + Delta-G solvation = -61.142921 kcal Electronic energy + Delta-G solvation = -28680.262967 eV Core-core repulsion = 24030.240872 eV Total energy + Delta-G solvation = -4650.022095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.15967 -47.15901 -43.68533 -39.81452 -38.95485 -38.16933 -35.04351 -34.65586 -33.85415 -31.87027 -31.47745 -30.49821 -28.13759 -27.49135 -25.32744 -24.29974 -24.02497 -22.15677 -20.89842 -19.85153 -19.09643 -18.45228 -18.22198 -17.80726 -17.52253 -16.83928 -16.79846 -16.61661 -16.00074 -15.83167 -15.49858 -15.34157 -15.12118 -14.66147 -14.21646 -14.04706 -13.83140 -13.67745 -13.50212 -13.38441 -13.33603 -13.04695 -12.35617 -12.23454 -12.11119 -11.77212 -11.70887 -11.20361 -11.10638 -10.56089 -10.46744 -10.42759 -10.31681 -9.72969 -9.68691 -9.13218 -8.77165 -8.68931 -8.18955 -6.59268 -4.01580 -0.10294 0.41444 1.42858 1.84260 2.37073 2.88275 2.94509 3.01333 3.04732 3.18431 3.25143 3.62437 3.63270 3.68612 3.73290 3.91153 4.03804 4.32681 4.39679 4.56968 4.69878 4.72017 4.77276 4.94606 5.08675 5.20648 5.49466 5.57465 5.68397 5.78257 5.91316 6.05955 6.31848 6.86394 7.12259 7.37963 7.39260 7.81571 7.97666 8.35436 8.96449 9.29369 9.76640 10.57419 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.002908 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.596062 B = 9626.167853 C =10691.014637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.545 5.545 10 C 0.426 3.574 11 O -0.596 6.596 12 C 0.107 3.893 13 N -0.686 5.686 14 C 0.586 3.414 15 O -0.510 6.510 16 C -0.047 4.047 17 C 0.035 3.965 18 C 0.352 3.648 19 F -0.182 7.182 20 F -0.184 7.184 21 N -0.436 5.436 22 C 0.173 3.827 23 C 0.200 3.800 24 N -0.453 5.453 25 C 0.053 3.947 26 C 0.015 3.985 27 N -0.317 5.317 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.415 0.585 33 H 0.140 0.860 34 H 0.197 0.803 35 H 0.188 0.812 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -19.627 2.995 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.483 6.483 12 C -0.020 4.020 13 N -0.340 5.340 14 C 0.367 3.633 15 O -0.384 6.384 16 C -0.169 4.169 17 C -0.105 4.105 18 C 0.297 3.703 19 F -0.163 7.163 20 F -0.165 7.165 21 N -0.156 5.156 22 C -0.071 4.071 23 C 0.018 3.982 24 N -0.165 5.165 25 C -0.085 4.085 26 C -0.110 4.110 27 N 0.011 4.989 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.253 0.747 33 H 0.157 0.843 34 H 0.213 0.787 35 H 0.205 0.795 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.192 -20.370 3.347 21.552 hybrid contribution -0.842 2.152 -0.138 2.314 sum 5.351 -18.219 3.209 19.257 Atomic orbital electron populations 1.69616 1.06041 1.28572 1.49007 1.25340 0.95677 1.00001 0.96603 0.85749 0.79704 0.80699 0.77903 1.19087 1.20514 1.20559 1.19788 0.93519 0.81882 1.48344 0.87554 1.41784 1.09509 1.04427 1.62251 1.19609 0.88270 0.84840 0.86172 1.90517 1.13603 1.86669 1.57482 1.21103 0.91620 0.85460 1.03831 1.45682 1.12233 1.03953 1.72110 1.16492 0.86561 0.81478 0.78802 1.90914 1.14835 1.84218 1.48472 1.21048 1.06529 1.04431 0.84896 1.21757 0.98269 0.95048 0.95455 1.19430 0.78710 0.83952 0.88251 1.93099 1.32177 1.95283 1.95775 1.93098 1.91336 1.42186 1.89913 1.70022 1.18801 1.22847 1.03930 1.22055 0.98907 0.93228 0.92909 1.22960 0.94043 0.96900 0.84316 1.68170 1.16908 1.13501 1.17877 1.22399 0.93402 0.92260 1.00470 1.22865 1.04126 1.03604 0.80442 1.42461 1.27629 1.22578 1.06254 0.91530 0.76987 0.89020 0.89406 0.74661 0.84298 0.78667 0.79474 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.29 13.05 55.50 0.72 -22.57 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.12 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.09 5.29 -10.96 -0.06 -13.15 16 10 C 0.43 9.42 7.85 -10.99 -0.09 9.34 16 11 O -0.60 -14.90 15.24 5.54 0.08 -14.82 16 12 C 0.11 1.88 6.16 -5.19 -0.03 1.85 16 13 N -0.69 -11.32 5.52 -62.91 -0.35 -11.67 16 14 C 0.59 9.51 7.36 -13.01 -0.10 9.41 16 15 O -0.51 -9.58 17.12 5.15 0.09 -9.49 16 16 C -0.05 -0.68 6.77 -81.92 -0.55 -1.23 16 17 C 0.04 0.47 6.60 -82.21 -0.54 -0.07 16 18 C 0.35 4.22 5.55 36.00 0.20 4.42 16 19 F -0.18 -2.56 17.32 2.25 0.04 -2.52 16 20 F -0.18 -2.57 17.32 2.25 0.04 -2.53 16 21 N -0.44 -5.34 11.24 -8.44 -0.09 -5.43 16 22 C 0.17 1.94 7.81 -156.09 -1.22 0.72 16 23 C 0.20 1.65 11.33 -16.83 -0.19 1.46 16 24 N -0.45 -3.91 10.42 -13.10 -0.14 -4.05 16 25 C 0.05 0.41 11.08 -17.96 -0.20 0.21 16 26 C 0.01 0.14 10.95 -16.68 -0.18 -0.04 16 27 N -0.32 -3.84 2.96 -58.85 -0.17 -4.02 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.40 9.11 7.90 -40.82 -0.32 8.79 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.41 7.00 7.42 -40.82 -0.30 6.69 16 33 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.20 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.19 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -33.39 342.39 -5.52 -38.90 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -2.67 Total: 12.69 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: -3.14 Total: 18.38 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.09 Total: -60.88 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.17 Total: -24.30 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.08 Total: -5.05 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.39 -5.52 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520737886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.241 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds