Wall clock time and date at job start Tue Mar 31 2020 22:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00270 * 2 1 4 4 H 1.48494 * 109.47427 * 270.00298 * 3 2 1 5 5 H 1.48501 * 109.47074 * 30.00118 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99902 * 3 2 1 7 7 C 1.38803 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00296 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00057 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46974 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99605 * 179.97438 * 11 10 9 14 14 C 1.47861 * 126.93181 * 0.05482 * 13 11 10 15 15 C 1.56015 * 105.11702 * 181.89009 * 14 13 11 16 16 H 1.09004 * 116.25781 * 158.85120 * 15 14 13 17 17 C 1.57093 * 99.59610 * 32.80653 * 15 14 13 18 18 C 1.49283 * 126.92487 * 180.02562 * 13 11 10 19 19 H 1.08998 * 116.75539 * 16.50864 * 18 13 11 20 20 C 1.56016 * 104.12773 * 246.93408 * 18 13 11 21 21 N 1.49481 * 105.17115 * 288.12710 * 20 18 13 22 22 C 1.46893 * 110.47397 * 122.91250 * 21 20 18 23 23 C 1.50696 * 109.47074 * 61.12502 * 22 21 20 24 24 C 1.33649 * 126.03508 * 90.00675 * 23 22 21 25 25 N 1.31781 * 114.49618 * 179.97438 * 24 23 22 26 26 C 1.29021 * 117.12817 * 359.97438 * 25 24 23 27 27 S 1.70982 * 110.16645 * 359.72291 * 26 25 24 28 28 H 0.97006 * 119.99777 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46960 * 60.00031 * 10 9 7 30 30 H 1.09003 * 109.46687 * 299.99761 * 10 9 7 31 31 H 1.09006 * 110.31453 * 62.97974 * 14 13 11 32 32 H 1.09008 * 110.31332 * 300.80529 * 14 13 11 33 33 H 1.09000 * 112.35682 * 64.33353 * 17 15 14 34 34 H 1.08998 * 112.35348 * 191.74639 * 17 15 14 35 35 H 1.09001 * 110.31966 * 47.69701 * 20 18 13 36 36 H 1.08996 * 110.31753 * 169.79629 * 20 18 13 37 37 H 1.08997 * 109.47259 * 181.12806 * 22 21 20 38 38 H 1.08997 * 109.47348 * 301.12690 * 22 21 20 39 39 H 1.07994 * 122.74736 * 359.97438 * 24 23 22 40 40 H 1.08002 * 124.91596 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0013 11 6 1.9872 -5.3028 -0.0018 12 8 0.7909 -5.5023 -0.0019 13 7 2.8440 -6.3431 -0.0020 14 6 4.3211 -6.2776 -0.0007 15 6 4.7944 -7.7634 -0.0513 16 1 5.8092 -7.9343 -0.4107 17 6 3.6327 -8.3791 -0.9111 18 6 2.4929 -7.7941 -0.0029 19 1 1.4706 -8.0514 -0.2800 20 6 2.9789 -8.3044 1.3890 21 7 4.4711 -8.3158 1.3023 22 6 5.0539 -7.4839 2.3634 23 6 4.6600 -8.0370 3.7087 24 6 5.3380 -8.9479 4.4135 25 7 4.7853 -9.2697 5.5657 26 6 3.6791 -8.6806 5.8724 27 16 3.2291 -7.5901 4.6347 28 1 -0.4850 0.8401 -0.0004 29 1 3.1237 -3.7318 0.8892 30 1 3.1250 -3.7310 -0.8909 31 1 4.6779 -5.7977 0.9107 32 1 4.6767 -5.7371 -0.8780 33 1 3.6058 -7.9738 -1.9225 34 1 3.6473 -9.4690 -0.9078 35 1 2.6414 -7.6319 2.1777 36 1 2.6119 -9.3145 1.5710 37 1 6.1401 -7.4877 2.2729 38 1 4.6850 -6.4627 2.2684 39 1 6.2631 -9.3845 4.0670 40 1 3.1210 -8.8482 6.7817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567853197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:27 Heat of formation + Delta-G solvation = 39.811292 kcal Electronic energy + Delta-G solvation = -24573.952745 eV Core-core repulsion = 21028.441954 eV Total energy + Delta-G solvation = -3545.510791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28701 -40.53111 -39.63532 -35.64344 -34.61722 -33.36691 -31.31758 -30.67811 -29.88307 -27.70451 -27.16676 -26.10727 -24.77058 -22.70910 -21.59762 -21.01888 -20.12098 -19.54820 -18.92367 -18.28169 -17.82589 -16.92371 -16.87919 -16.63809 -16.32729 -16.03471 -15.65883 -15.20665 -15.06358 -14.83701 -14.61394 -14.21814 -14.15069 -13.77991 -13.64006 -13.40492 -13.19503 -13.08058 -12.91595 -12.75040 -12.62097 -12.46636 -12.33365 -12.16790 -11.97964 -11.75578 -11.17080 -11.05714 -10.67272 -10.33012 -10.28825 -10.02009 -9.76098 -9.37931 -8.71838 -8.37580 -6.16746 -0.28115 0.39537 0.79674 1.18840 1.40618 1.41508 1.49951 1.53367 1.85577 1.95906 2.24174 2.80321 2.96664 3.15795 3.31257 3.37101 3.48164 3.62315 3.76296 3.80324 3.93012 4.00437 4.15493 4.27442 4.36534 4.38679 4.42230 4.48962 4.60044 4.67929 4.76744 4.84478 4.88335 4.98184 5.02254 5.19751 5.21788 5.38213 5.53889 5.79338 6.16455 6.33916 6.71281 7.03396 7.04533 8.71681 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.003052 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.589983 B = 9172.711866 C =10155.716716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.119 4.119 11 C 0.549 3.451 12 O -0.565 6.565 13 N -0.619 5.619 14 C 0.050 3.950 15 C 0.068 3.932 16 H 0.177 0.823 17 C -0.118 4.118 18 C 0.098 3.902 19 H 0.113 0.887 20 C 0.025 3.975 21 N -0.493 5.493 22 C 0.111 3.889 23 C -0.215 4.215 24 C 0.044 3.956 25 N -0.498 5.498 26 C 0.021 3.979 27 S 0.098 5.902 28 H 0.272 0.728 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.049 0.951 39 H 0.195 0.805 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.028 -20.276 4.217 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.270 4.270 11 C 0.337 3.663 12 O -0.443 6.443 13 N -0.355 5.355 14 C -0.073 4.073 15 C -0.039 4.039 16 H 0.194 0.806 17 C -0.156 4.156 18 C -0.005 4.005 19 H 0.131 0.869 20 C -0.104 4.104 21 N -0.217 5.217 22 C -0.018 4.018 23 C -0.336 4.336 24 C -0.108 4.108 25 N -0.212 5.212 26 C -0.276 4.276 27 S 0.350 5.650 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.211 0.789 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 13.664 -20.652 4.600 25.187 hybrid contribution 1.388 1.935 -0.034 2.381 sum 15.052 -18.717 4.566 24.448 Atomic orbital electron populations 1.70181 1.07985 1.28681 1.47824 1.26132 0.95970 1.03307 0.93624 0.84953 0.78206 0.75944 0.78878 1.19188 1.20236 1.18173 1.23171 0.95257 0.91902 1.59146 0.90035 1.85586 1.10274 0.99170 1.97018 1.23283 1.03454 0.94314 1.05928 1.19742 0.85487 0.85841 0.75226 1.90689 1.16932 1.85666 1.51056 1.49234 1.07574 1.05529 1.73141 1.23599 0.78647 1.01322 1.03745 1.24963 1.01686 0.88524 0.88751 0.80627 1.23935 0.91509 1.02356 0.97819 1.24173 1.00876 0.78715 0.96778 0.86946 1.23966 0.89054 1.01551 0.95879 1.65970 1.06717 1.47148 1.01831 1.20900 1.02180 0.94174 0.84590 1.25927 0.99205 1.05581 1.02933 1.22037 1.02456 0.96809 0.89452 1.66404 1.09938 1.26644 1.18201 1.28864 0.96643 0.97573 1.04509 1.84736 1.24875 1.41702 1.13653 0.91924 0.88290 0.87688 0.90051 0.89158 0.89062 0.86743 0.93567 0.88746 0.85422 0.93336 0.78875 0.76130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.55 -31.27 9.50 67.96 0.65 -30.62 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 10 C -0.12 -4.84 5.44 71.24 0.39 -4.45 16 11 C 0.55 21.05 7.91 87.66 0.69 21.75 16 12 O -0.56 -26.95 16.23 -3.03 -0.05 -27.00 16 13 N -0.62 -16.43 2.95 -768.44 -2.26 -18.70 16 14 C 0.05 0.86 5.66 87.16 0.49 1.35 16 15 C 0.07 0.74 5.23 46.85 0.24 0.99 16 16 H 0.18 0.72 8.14 -2.39 -0.02 0.71 16 17 C -0.12 -1.53 6.79 33.45 0.23 -1.30 16 18 C 0.10 2.11 5.22 46.92 0.24 2.35 16 19 H 0.11 2.77 8.08 -2.39 -0.02 2.75 16 20 C 0.02 0.48 5.62 86.85 0.49 0.96 16 21 N -0.49 -7.07 5.42 -840.85 -4.56 -11.63 16 22 C 0.11 1.62 4.89 85.56 0.42 2.04 16 23 C -0.22 -3.81 5.37 24.64 0.13 -3.68 16 24 C 0.04 0.77 11.25 83.66 0.94 1.71 16 25 N -0.50 -10.20 10.54 -203.74 -2.15 -12.35 16 26 C 0.02 0.37 12.23 130.66 1.60 1.97 16 27 S 0.10 1.94 21.48 -56.49 -1.21 0.73 16 28 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 29 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.08 1.41 5.27 -2.38 -0.01 1.40 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.12 5.64 -2.39 -0.01 1.10 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 0.87 5.49 -2.39 -0.01 0.85 16 39 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -79.57 353.73 -1.04 -80.61 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.07 Total: 13.65 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.98 Total: -5.63 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -8.69 Total: -98.28 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -2.38 Total: -8.71 kcal Total: -79.57 -1.04 -80.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567853197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.418 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds