Wall clock time and date at job start Tue Mar 31 2020 23:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46716 * 103.59588 * 3 2 1 5 5 C 1.36912 * 120.00130 * 96.81823 * 4 3 2 6 6 H 1.07999 * 119.99633 * 157.42453 * 5 4 3 7 7 C 1.39019 * 119.99679 * 337.42260 * 5 4 3 8 8 N 1.31379 * 120.00354 * 355.38444 * 7 5 4 9 9 Si 1.86800 * 119.99765 * 175.38061 * 7 5 4 10 10 H 1.48502 * 109.47099 * 60.00450 * 9 7 5 11 11 H 1.48495 * 109.47173 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47459 * 300.00185 * 9 7 5 13 13 C 1.34772 * 120.00270 * 276.81205 * 4 3 2 14 14 O 1.21620 * 120.00662 * 184.06836 * 13 4 3 15 15 C 1.47471 * 119.99712 * 4.06713 * 13 4 3 16 16 C 1.39425 * 120.12404 * 305.02267 * 15 13 4 17 17 C 1.39314 * 119.74485 * 180.27400 * 16 15 13 18 18 C 1.47562 * 120.00500 * 179.76495 * 17 16 15 19 19 C 1.37820 * 125.71306 * 179.97438 * 18 17 16 20 20 C 1.39505 * 107.01513 * 179.97438 * 19 18 17 21 21 C 1.38370 * 106.81439 * 0.02562 * 20 19 18 22 22 C 1.40978 * 125.89957 * 180.02562 * 21 20 19 23 23 O 1.21489 * 120.00084 * 180.02562 * 22 21 20 24 24 O 1.34331 * 125.71103 * 359.66828 * 18 17 16 25 25 C 1.39991 * 119.99062 * 359.74262 * 17 16 15 26 26 C 1.37702 * 120.25059 * 359.97438 * 25 17 16 27 27 C 1.38875 * 120.25435 * 0.02562 * 26 25 17 28 28 O 1.35571 * 119.99768 * 179.97438 * 27 26 25 29 29 H 4.40636 * 5.51423 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47662 * 343.59573 * 3 2 1 31 31 H 1.09006 * 109.46906 * 223.59088 * 3 2 1 32 32 H 0.97002 * 120.00495 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.12727 * 359.97438 * 16 15 13 34 34 H 1.07993 * 126.49065 * 0.02562 * 19 18 17 35 35 H 1.08002 * 126.59440 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.99731 * 359.97438 * 22 21 20 37 37 H 1.08005 * 119.88130 * 180.02562 * 25 17 16 38 38 H 1.07999 * 119.87400 * 180.02562 * 26 25 17 39 39 H 0.96699 * 114.00093 * 89.99939 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3256 -1.3425 5 6 3.4944 1.6107 -1.6475 6 1 4.1737 1.8014 -2.4652 7 6 2.9857 2.6700 -0.9048 8 7 2.0903 2.4466 0.0303 9 14 3.5756 4.4112 -1.2361 10 1 3.2686 4.7788 -2.6418 11 1 2.8847 5.3512 -0.3172 12 1 5.0417 4.4881 -1.0132 13 6 3.2286 -0.6406 -2.2774 14 8 3.7028 -0.3871 -3.3682 15 6 2.7569 -2.0053 -1.9775 16 6 3.2475 -2.6864 -0.8643 17 6 2.8008 -3.9775 -0.5917 18 6 3.3201 -4.7056 0.5821 19 6 2.9610 -5.9811 0.9611 20 6 3.6831 -6.2822 2.1161 21 6 4.4605 -5.1739 2.4025 22 6 5.3489 -5.0459 3.4896 23 8 5.9812 -4.0194 3.6398 24 8 4.2262 -4.2383 1.4568 25 6 1.8589 -4.5839 -1.4312 26 6 1.3701 -3.9087 -2.5273 27 6 1.8083 -2.6213 -2.8087 28 8 1.3241 -1.9616 -3.8896 29 1 -1.0501 -0.0002 0.0001 30 1 3.0099 -0.9849 0.2902 31 1 3.0090 0.7452 0.7086 32 1 1.7356 3.1857 0.5488 33 1 3.9747 -2.2167 -0.2185 34 1 2.2551 -6.6256 0.4586 35 1 3.6425 -7.2030 2.6791 36 1 5.4669 -5.8601 4.1894 37 1 1.5134 -5.5848 -1.2180 38 1 0.6433 -4.3822 -3.1707 39 1 0.5303 -1.4398 -3.7088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567960434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:18 Heat of formation + Delta-G solvation = 18.153861 kcal Electronic energy + Delta-G solvation = -28586.039601 eV Core-core repulsion = 24429.100100 eV Total energy + Delta-G solvation = -4156.939501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75539 -40.00064 -38.85986 -37.99089 -36.63302 -35.16368 -33.52317 -32.34734 -31.69474 -31.40300 -30.79125 -28.81122 -26.55325 -25.17260 -24.69059 -23.33187 -22.15803 -21.75885 -20.63474 -19.64002 -18.22248 -17.92501 -17.70579 -16.77892 -16.49542 -16.40540 -16.20834 -15.70162 -15.62183 -15.02121 -14.65764 -14.26735 -14.03336 -13.97162 -13.64709 -13.57535 -13.35898 -13.04453 -12.89138 -12.61259 -12.34081 -12.30409 -11.84564 -11.72710 -11.40536 -11.06650 -10.61606 -10.44940 -10.37076 -10.28739 -10.26933 -9.50074 -9.46888 -9.35940 -8.96505 -8.81105 -8.49024 -7.91386 -7.89130 -6.37855 -3.99435 0.18880 1.12143 1.27534 2.25969 2.47907 2.77679 3.14373 3.21104 3.24061 3.49064 3.66833 3.96248 4.02570 4.09650 4.14757 4.33697 4.48194 4.57353 4.70835 4.85863 4.90100 5.01078 5.05631 5.31484 5.37194 5.38404 5.52927 5.59009 5.61244 5.78197 5.95753 6.02856 6.20427 6.20881 6.35274 6.49543 6.69382 6.71696 6.84186 7.02602 7.27121 7.45598 7.87331 7.97766 8.34628 8.75000 9.02835 9.22865 9.79089 10.59775 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.004064 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.431483 B = 6887.434590 C = 8414.019182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.101 4.101 3 C 0.216 3.784 4 N -0.429 5.429 5 C -0.306 4.306 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.871 5.871 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.562 6.562 15 C -0.112 4.112 16 C -0.057 4.057 17 C -0.060 4.060 18 C 0.099 3.901 19 C -0.222 4.222 20 C -0.112 4.112 21 C -0.139 4.139 22 C 0.403 3.597 23 O -0.453 6.453 24 O -0.135 6.135 25 C -0.069 4.069 26 C -0.150 4.150 27 C 0.165 3.835 28 O -0.482 6.482 29 H 0.199 0.801 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.271 0.729 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -18.136 6.131 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.103 4.103 3 C 0.094 3.906 4 N -0.146 5.146 5 C -0.433 4.433 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.509 5.509 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.274 3.726 14 O -0.445 6.445 15 C -0.116 4.116 16 C -0.076 4.076 17 C -0.060 4.060 18 C 0.045 3.955 19 C -0.241 4.241 20 C -0.132 4.132 21 C -0.189 4.189 22 C 0.263 3.737 23 O -0.327 6.327 24 O -0.029 6.029 25 C -0.088 4.088 26 C -0.168 4.168 27 C 0.119 3.881 28 O -0.292 6.292 29 H 0.216 0.784 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.375 -17.232 5.534 18.254 hybrid contribution -0.819 0.928 0.217 1.256 sum -3.194 -16.304 5.751 17.581 Atomic orbital electron populations 1.24247 0.95332 1.07110 1.02531 1.23202 0.94300 0.94738 0.98030 1.18786 0.84429 0.99961 0.87460 1.43615 1.54891 1.07978 1.08155 1.19705 1.25734 0.80418 1.17448 0.87745 1.25426 0.95233 1.00392 0.96242 1.69924 1.26781 1.32611 1.21585 0.85890 0.78880 0.80862 0.78490 1.19733 1.20856 1.19693 1.17713 0.85789 0.84142 0.84969 1.90667 1.48716 1.82064 1.23056 1.20661 0.99138 0.97089 0.94721 1.21473 0.98126 0.92646 0.95325 1.17602 1.00804 0.94176 0.93404 1.21345 0.90481 0.92971 0.90729 1.21915 1.06244 0.96113 0.99845 1.22358 0.95483 0.98398 0.96953 1.22453 1.08598 0.90521 0.97367 1.21938 0.77659 0.90843 0.83225 1.90686 1.39606 1.30799 1.71636 1.84259 1.47568 1.40241 1.30791 1.20839 0.95113 0.99497 0.93336 1.21190 1.02460 0.94902 0.98268 1.18586 0.92983 0.90790 0.85775 1.84729 1.48149 1.65752 1.30593 0.78401 0.91845 0.85663 0.91796 0.84195 0.82249 0.81849 0.85115 0.84913 0.84409 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.54 19.25 29.55 0.57 -4.98 16 2 C -0.10 -2.26 11.29 -37.12 -0.42 -2.68 16 3 C 0.22 4.94 4.86 -6.83 -0.03 4.90 16 4 N -0.43 -10.92 2.60 -119.14 -0.31 -11.23 16 5 C -0.31 -8.35 9.33 -14.99 -0.14 -8.49 16 6 H 0.10 2.98 7.35 -52.49 -0.39 2.59 16 7 C 0.03 0.79 5.22 -17.46 -0.09 0.70 16 8 N -0.87 -22.42 8.88 55.50 0.49 -21.93 16 9 Si 0.93 20.52 29.56 -169.99 -5.02 15.50 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.49 12.16 6.69 -12.50 -0.08 12.07 16 14 O -0.56 -16.09 16.48 2.97 0.05 -16.05 16 15 C -0.11 -2.26 4.83 -104.89 -0.51 -2.77 16 16 C -0.06 -1.01 7.47 -38.74 -0.29 -1.30 16 17 C -0.06 -0.87 5.87 -105.04 -0.62 -1.48 16 18 C 0.10 1.32 7.05 -35.93 -0.25 1.07 16 19 C -0.22 -2.18 10.25 -39.26 -0.40 -2.58 16 20 C -0.11 -0.94 10.86 -39.06 -0.42 -1.36 16 21 C -0.14 -1.59 6.94 -38.50 -0.27 -1.85 16 22 C 0.40 4.00 11.38 31.77 0.36 4.36 16 23 O -0.45 -6.86 17.88 -5.49 -0.10 -6.96 16 24 O -0.13 -2.02 10.35 -7.41 -0.08 -2.10 16 25 C -0.07 -0.84 9.54 -39.12 -0.37 -1.21 16 26 C -0.15 -2.00 9.96 -39.54 -0.39 -2.39 16 27 C 0.17 2.91 6.71 -38.55 -0.26 2.65 16 28 O -0.48 -8.63 12.71 -20.70 -0.26 -8.90 16 29 H 0.20 3.23 7.80 -54.09 -0.42 2.80 16 30 H 0.06 1.30 4.15 -51.93 -0.22 1.08 16 31 H 0.13 3.06 6.20 -51.93 -0.32 2.73 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.14 2.54 6.48 -52.49 -0.34 2.20 16 34 H 0.16 1.10 7.24 -52.49 -0.38 0.72 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 1.10 6.95 -52.48 -0.36 0.73 16 38 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.39 5.55 9.06 45.56 0.41 5.97 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -36.02 354.97 -5.92 -41.94 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -2.42 Total: 9.71 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.62 Total: -5.34 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.18 Total: -33.16 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.39 Total: -33.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.02 -5.92 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567960434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.092 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds