Wall clock time and date at job start Tue Mar 31 2020 22:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 299.99806 * 3 2 1 6 6 H 1.48503 * 109.46853 * 59.99259 * 3 2 1 7 7 C 1.39950 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 192.26437 * 7 2 1 9 9 C 1.41393 * 119.99845 * 12.27386 * 7 2 1 10 10 C 1.40714 * 120.24298 * 207.62194 * 9 7 2 11 11 C 1.37617 * 119.74376 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.24946 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74841 * 180.02562 * 12 11 10 14 14 N 1.46899 * 109.47137 * 90.00052 * 13 12 11 15 15 C 1.46469 * 111.00024 * 49.13017 * 14 13 12 16 16 C 1.53175 * 109.90028 * 196.99751 * 15 14 13 17 17 S 1.81815 * 108.67942 * 297.36562 * 16 15 14 18 18 O 1.42102 * 108.69886 * 298.05744 * 17 16 15 19 19 O 1.42103 * 108.83127 * 166.61854 * 17 16 15 20 20 C 1.81809 * 101.02289 * 52.31205 * 17 16 15 21 21 C 1.46473 * 110.99830 * 174.98248 * 14 13 12 22 22 H 1.08998 * 109.39931 * 283.13654 * 21 14 13 23 23 C 1.50706 * 109.39945 * 42.95552 * 21 14 13 24 24 O 1.20833 * 119.99465 * 37.93245 * 23 21 14 25 25 O 1.34222 * 120.00111 * 217.92806 * 23 21 14 26 26 C 1.38629 * 120.50193 * 0.27461 * 12 11 10 27 27 C 1.37620 * 120.24644 * 359.44672 * 26 12 11 28 28 H 0.97009 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12467 * 359.95976 * 10 9 7 30 30 H 1.08007 * 119.87064 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.46653 * 329.99801 * 13 12 11 32 32 H 1.09004 * 109.46833 * 210.00647 * 13 12 11 33 33 H 1.09001 * 109.39624 * 317.12998 * 15 14 13 34 34 H 1.08995 * 109.40165 * 76.86382 * 15 14 13 35 35 H 1.09001 * 109.60752 * 177.60407 * 16 15 14 36 36 H 1.09009 * 109.73557 * 57.20016 * 16 15 14 37 37 H 1.08998 * 109.60947 * 187.92733 * 20 17 16 38 38 H 1.09004 * 109.60277 * 67.44203 * 20 17 16 39 39 H 0.96698 * 117.00143 * 180.02562 * 25 23 21 40 40 H 1.08001 * 119.88129 * 179.70209 * 26 12 11 41 41 H 1.08010 * 120.13024 * 180.27343 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8833 2.3965 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0694 -1.2226 0.1992 9 6 1.3251 -2.4226 -0.2592 10 6 1.8013 -3.6337 0.2760 11 6 1.1284 -4.8059 0.0171 12 6 -0.0140 -4.7966 -0.7682 13 6 -0.7424 -6.0868 -1.0441 14 7 -1.7546 -6.3099 -0.0032 15 6 -2.5714 -5.1113 0.2003 16 6 -3.3129 -5.2064 1.5372 17 16 -4.4399 -6.6319 1.4780 18 8 -5.3921 -6.4172 0.4452 19 8 -4.8931 -6.9133 2.7951 20 6 -3.3034 -7.9522 0.9578 21 6 -2.5631 -7.4940 -0.3025 22 1 -3.2877 -7.2506 -1.0796 23 6 -1.6655 -8.6042 -0.7852 24 8 -0.5756 -8.7595 -0.2871 25 8 -2.0767 -9.4204 -1.7682 26 6 -0.4886 -3.6102 -1.3058 27 6 0.1649 -2.4253 -1.0554 28 1 -0.4851 0.8401 -0.0004 29 1 2.6914 -3.6433 0.8875 30 1 1.4918 -5.7367 0.4272 31 1 -0.0312 -6.9129 -1.0426 32 1 -1.2291 -6.0282 -2.0177 33 1 -1.9282 -4.2314 0.2047 34 1 -3.2954 -5.0248 -0.6099 35 1 -3.8857 -4.2940 1.7035 36 1 -2.5957 -5.3406 2.3471 37 1 -3.8697 -8.8578 0.7404 38 1 -2.5842 -8.1498 1.7527 39 1 -1.4664 -10.1179 -2.0438 40 1 -1.3769 -3.6152 -1.9202 41 1 -0.2091 -1.5014 -1.4716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571103179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:11 Heat of formation + Delta-G solvation = -120.892337 kcal Electronic energy + Delta-G solvation = -27792.747422 eV Core-core repulsion = 23765.222377 eV Total energy + Delta-G solvation = -4027.525045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87412 -38.68598 -37.34627 -36.95302 -36.20276 -36.17213 -33.98492 -32.41668 -31.66163 -29.62497 -29.26702 -26.42812 -25.68028 -23.88984 -22.71060 -21.10176 -20.62686 -19.88198 -19.04848 -18.38522 -17.47069 -17.39008 -16.78349 -16.25890 -15.88033 -15.75637 -15.47328 -15.33994 -15.07940 -14.36945 -14.12438 -13.78461 -13.73134 -13.39168 -13.01415 -12.72744 -12.45574 -12.37513 -12.20610 -12.12706 -12.04648 -12.00392 -11.95101 -11.66357 -11.41590 -11.32774 -11.16967 -11.02384 -10.65477 -10.55160 -10.47784 -10.09711 -9.68073 -9.48150 -9.29411 -8.48406 -7.55957 -7.39141 -6.82857 -4.47691 -0.16298 1.89009 2.37428 2.55204 2.72159 2.95511 3.02525 3.03985 3.07470 3.45655 3.58939 3.86397 3.92353 4.20938 4.44990 4.57135 4.67728 4.74748 4.96547 5.02424 5.14421 5.34909 5.55660 5.57714 5.64751 5.84974 6.05378 6.14712 6.19010 6.29001 6.34339 6.79465 6.82800 6.90608 6.98758 7.16635 7.26143 7.50597 7.67616 7.74604 7.94772 7.98824 8.19333 8.53087 8.79595 8.85171 10.10673 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003352 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.905481 B = 8351.487613 C = 9574.660938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.226 4.226 11 C -0.064 4.064 12 C -0.219 4.219 13 C 0.109 3.891 14 N -0.531 5.531 15 C 0.055 3.945 16 C -0.584 4.584 17 S 2.417 3.583 18 O -0.937 6.937 19 O -0.940 6.940 20 C -0.599 4.599 21 C 0.108 3.892 22 H 0.092 0.908 23 C 0.489 3.511 24 O -0.484 6.484 25 O -0.516 6.516 26 C -0.100 4.100 27 C -0.160 4.160 28 H 0.280 0.720 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.137 0.863 34 H 0.056 0.944 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.413 0.587 40 H 0.086 0.914 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -11.980 -1.412 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.083 4.083 12 C -0.221 4.221 13 C -0.016 4.016 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.715 4.715 17 S 2.599 3.401 18 O -0.934 6.934 19 O -0.937 6.937 20 C -0.727 4.727 21 C -0.003 4.003 22 H 0.109 0.891 23 C 0.328 3.672 24 O -0.368 6.368 25 O -0.328 6.328 26 C -0.119 4.119 27 C -0.180 4.180 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.570 -11.723 -0.524 13.964 hybrid contribution 1.166 0.411 -0.857 1.504 sum -6.404 -11.312 -1.381 13.072 Atomic orbital electron populations 1.69782 1.07485 1.29116 1.35871 1.25903 0.94827 1.01317 0.92248 0.86229 0.80887 0.80851 0.78590 1.18437 1.19725 1.19935 1.19676 0.96420 0.90669 1.42146 0.90396 1.17673 0.91230 0.92086 0.87839 1.21037 1.03259 0.93270 1.06958 1.20387 0.94629 0.96545 0.96709 1.18718 1.00573 0.92269 1.10507 1.21080 0.92195 0.98565 0.89762 1.61462 1.14728 1.01295 1.48344 1.22065 0.96959 0.96009 0.92218 1.30169 1.15107 1.18738 1.07525 1.08135 0.77421 0.79199 0.75359 1.93595 1.56542 1.84494 1.58747 1.93599 1.78974 1.83856 1.37264 1.30365 1.16030 1.19484 1.06788 1.20744 0.94195 0.90101 0.95238 0.89060 1.22800 0.86005 0.81754 0.76595 1.90754 1.21686 1.69457 1.54938 1.84523 1.52070 1.44333 1.51881 1.20576 0.98534 0.92957 0.99792 1.21344 0.98791 0.96448 1.01383 0.90893 0.88933 0.89077 0.89516 0.95021 0.84524 0.92558 0.83979 0.83563 0.84137 0.83054 0.72812 0.89536 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.50 10.85 55.55 0.60 -18.90 16 2 C 0.07 1.78 5.23 -17.34 -0.09 1.69 16 3 Si 0.91 17.99 29.58 -169.99 -5.03 12.96 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.64 9.06 -37.74 -0.34 -11.98 16 8 H 0.08 1.92 7.87 -52.49 -0.41 1.50 16 9 C 0.11 2.87 5.56 -106.83 -0.59 2.27 16 10 C -0.23 -5.25 9.80 -38.87 -0.38 -5.63 16 11 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 12 C -0.22 -4.29 4.35 -104.33 -0.45 -4.74 16 13 C 0.11 1.75 4.53 -4.98 -0.02 1.73 16 14 N -0.53 -7.49 4.31 -229.95 -0.99 -8.48 16 15 C 0.06 0.76 4.95 -3.97 -0.02 0.74 16 16 C -0.58 -6.53 6.58 37.25 0.24 -6.28 16 17 S 2.42 26.40 5.34 -107.50 -0.57 25.82 16 18 O -0.94 -12.67 18.10 -57.81 -1.05 -13.72 16 19 O -0.94 -12.94 18.11 -57.81 -1.05 -13.99 16 20 C -0.60 -5.70 5.83 37.25 0.22 -5.48 16 21 C 0.11 1.25 2.35 -69.00 -0.16 1.09 16 22 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 23 C 0.49 5.83 6.17 36.01 0.22 6.05 16 24 O -0.48 -7.17 15.72 -18.76 -0.29 -7.47 16 25 O -0.52 -4.56 13.42 -39.24 -0.53 -5.09 16 26 C -0.10 -2.06 7.51 -39.66 -0.30 -2.36 16 27 C -0.16 -3.83 8.67 -38.87 -0.34 -4.17 16 28 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 29 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.09 1.45 5.69 -51.93 -0.30 1.15 16 32 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.14 2.29 4.81 -51.93 -0.25 2.04 16 34 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 35 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.15 1.55 8.14 -51.92 -0.42 1.12 16 37 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.15 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.41 1.86 9.10 45.56 0.41 2.27 16 40 H 0.09 1.60 8.05 -52.49 -0.42 1.18 16 41 H 0.12 3.00 6.19 -52.48 -0.32 2.68 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -32.54 349.63 -10.24 -42.78 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.21 Total: 9.61 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -2.40 Total: -28.80 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: -0.39 Total: -27.38 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -2.91 Total: -40.27 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 26.40 SS G_CDS: -0.57 Total: 25.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.54 -10.24 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571103179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.108 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds