Wall clock time and date at job start Tue Mar 31 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86804 * 120.00232 * 2 1 4 4 H 1.48495 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47093 * 299.99806 * 3 2 1 6 6 H 1.48503 * 109.46853 * 59.99259 * 3 2 1 7 7 C 1.39950 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 192.26437 * 7 2 1 9 9 C 1.41393 * 119.99845 * 12.27386 * 7 2 1 10 10 C 1.40714 * 120.24298 * 207.62194 * 9 7 2 11 11 C 1.37617 * 119.74376 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.24946 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74841 * 180.02562 * 12 11 10 14 14 N 1.46899 * 109.47137 * 90.00052 * 13 12 11 15 15 C 1.46469 * 111.00024 * 49.13017 * 14 13 12 16 16 C 1.53175 * 109.90028 * 196.99751 * 15 14 13 17 17 S 1.81815 * 108.67942 * 297.36562 * 16 15 14 18 18 O 1.42102 * 108.69886 * 298.05744 * 17 16 15 19 19 O 1.42103 * 108.83127 * 166.61854 * 17 16 15 20 20 C 1.81809 * 101.02289 * 52.31205 * 17 16 15 21 21 C 1.46473 * 110.99830 * 174.98248 * 14 13 12 22 22 H 1.08998 * 109.39931 * 283.13654 * 21 14 13 23 23 C 1.50706 * 109.39945 * 42.95552 * 21 14 13 24 24 O 1.20833 * 119.99465 * 37.93245 * 23 21 14 25 25 O 1.34222 * 120.00111 * 217.92806 * 23 21 14 26 26 C 1.38629 * 120.50193 * 0.27461 * 12 11 10 27 27 C 1.37620 * 120.24644 * 359.44672 * 26 12 11 28 28 H 0.97009 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12467 * 359.95976 * 10 9 7 30 30 H 1.08007 * 119.87064 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.46653 * 329.99801 * 13 12 11 32 32 H 1.09004 * 109.46833 * 210.00647 * 13 12 11 33 33 H 1.09001 * 109.39624 * 317.12998 * 15 14 13 34 34 H 1.08995 * 109.40165 * 76.86382 * 15 14 13 35 35 H 1.09001 * 109.60752 * 177.60407 * 16 15 14 36 36 H 1.09009 * 109.73557 * 57.20016 * 16 15 14 37 37 H 1.08998 * 109.60947 * 187.92733 * 20 17 16 38 38 H 1.09004 * 109.60277 * 67.44203 * 20 17 16 39 39 H 0.96698 * 117.00143 * 180.02562 * 25 23 21 40 40 H 1.08001 * 119.88129 * 179.70209 * 26 12 11 41 41 H 1.08010 * 120.13024 * 180.27343 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8833 2.3965 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0694 -1.2226 0.1992 9 6 1.3251 -2.4226 -0.2592 10 6 1.8013 -3.6337 0.2760 11 6 1.1284 -4.8059 0.0171 12 6 -0.0140 -4.7966 -0.7682 13 6 -0.7424 -6.0868 -1.0441 14 7 -1.7546 -6.3099 -0.0032 15 6 -2.5714 -5.1113 0.2003 16 6 -3.3129 -5.2064 1.5372 17 16 -4.4399 -6.6319 1.4780 18 8 -5.3921 -6.4172 0.4452 19 8 -4.8931 -6.9133 2.7951 20 6 -3.3034 -7.9522 0.9578 21 6 -2.5631 -7.4940 -0.3025 22 1 -3.2877 -7.2506 -1.0796 23 6 -1.6655 -8.6042 -0.7852 24 8 -0.5756 -8.7595 -0.2871 25 8 -2.0767 -9.4204 -1.7682 26 6 -0.4886 -3.6102 -1.3058 27 6 0.1649 -2.4253 -1.0554 28 1 -0.4851 0.8401 -0.0004 29 1 2.6914 -3.6433 0.8875 30 1 1.4918 -5.7367 0.4272 31 1 -0.0312 -6.9129 -1.0426 32 1 -1.2291 -6.0282 -2.0177 33 1 -1.9282 -4.2314 0.2047 34 1 -3.2954 -5.0248 -0.6099 35 1 -3.8857 -4.2940 1.7035 36 1 -2.5957 -5.3406 2.3471 37 1 -3.8697 -8.8578 0.7404 38 1 -2.5842 -8.1498 1.7527 39 1 -1.4664 -10.1179 -2.0438 40 1 -1.3769 -3.6152 -1.9202 41 1 -0.2091 -1.5014 -1.4716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571103179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:10 Heat of formation + Delta-G solvation = -145.413384 kcal Electronic energy + Delta-G solvation = -27793.810735 eV Core-core repulsion = 23765.222377 eV Total energy + Delta-G solvation = -4028.588358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82004 -39.99108 -38.66870 -38.02023 -37.17171 -37.07006 -35.66878 -33.51812 -32.89251 -31.26380 -30.83164 -27.93240 -26.60261 -25.30308 -23.89018 -22.73592 -21.89280 -21.26038 -19.94929 -19.26353 -19.19402 -18.39688 -17.77406 -17.18674 -17.12646 -16.80676 -16.70612 -16.52164 -16.10989 -15.77200 -15.55902 -15.28535 -15.03056 -14.34779 -14.19381 -14.09711 -13.79144 -13.57470 -13.43943 -13.33293 -13.20791 -13.11544 -13.07453 -12.89144 -12.78902 -12.71665 -12.48645 -12.26515 -12.25606 -11.97387 -11.54840 -11.41906 -11.23905 -11.13724 -11.01837 -9.59446 -9.30452 -9.14777 -8.59731 -6.34765 -1.04910 0.88183 1.00872 1.16315 1.39311 1.46908 1.52827 1.54189 1.89064 2.21632 2.47938 2.59595 2.82437 2.99971 3.31505 3.61794 3.73777 3.79474 3.91469 4.03657 4.16047 4.25867 4.27080 4.35229 4.53814 4.61116 4.64325 4.76160 4.88559 5.00167 5.05782 5.17983 5.36487 5.47661 5.52883 5.65412 5.73210 5.77570 6.00725 6.12090 6.24163 6.41276 6.71398 6.93893 6.96352 7.03752 8.35842 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003352 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.905481 B = 8351.487613 C = 9574.660938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.083 3.917 10 C -0.242 4.242 11 C -0.070 4.070 12 C -0.198 4.198 13 C 0.114 3.886 14 N -0.538 5.538 15 C 0.052 3.948 16 C -0.587 4.587 17 S 2.445 3.555 18 O -0.961 6.961 19 O -0.968 6.968 20 C -0.588 4.588 21 C 0.099 3.901 22 H 0.111 0.889 23 C 0.497 3.503 24 O -0.517 6.517 25 O -0.505 6.505 26 C -0.092 4.092 27 C -0.181 4.181 28 H 0.287 0.713 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.433 0.567 40 H 0.111 0.889 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -13.668 -1.991 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.531 4.531 8 H 0.088 0.912 9 C 0.081 3.919 10 C -0.261 4.261 11 C -0.088 4.088 12 C -0.199 4.199 13 C -0.011 4.011 14 N -0.266 5.266 15 C -0.076 4.076 16 C -0.718 4.718 17 S 2.630 3.370 18 O -0.958 6.958 19 O -0.965 6.965 20 C -0.717 4.717 21 C -0.011 4.011 22 H 0.129 0.871 23 C 0.337 3.663 24 O -0.405 6.405 25 O -0.320 6.320 26 C -0.111 4.111 27 C -0.201 4.201 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.191 0.809 38 H 0.179 0.821 39 H 0.296 0.704 40 H 0.129 0.871 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.770 -13.428 -1.112 16.077 hybrid contribution 1.457 0.690 -0.738 1.773 sum -7.313 -12.738 -1.850 14.804 Atomic orbital electron populations 1.69829 1.08627 1.30236 1.36628 1.26638 0.95594 1.04107 0.91414 0.85198 0.79285 0.76575 0.78896 1.18540 1.18877 1.19205 1.19863 0.96381 0.92062 1.44760 0.91165 1.17964 0.92256 0.92782 0.88902 1.21175 1.03731 0.93779 1.07438 1.20606 0.94993 0.96335 0.96885 1.19072 0.99518 0.93604 1.07744 1.20957 0.92818 0.96151 0.91216 1.61279 1.15263 1.02308 1.47727 1.22005 0.96777 0.94655 0.94129 1.30197 1.15223 1.19985 1.06394 1.07195 0.76923 0.78853 0.74076 1.93561 1.57998 1.85009 1.59225 1.93565 1.79858 1.84288 1.38805 1.30297 1.15622 1.19646 1.06174 1.20908 0.94300 0.89101 0.96811 0.87138 1.22726 0.85266 0.81741 0.76555 1.90757 1.23075 1.70434 1.56258 1.84475 1.52454 1.44523 1.50506 1.20784 0.98688 0.92239 0.99384 1.21295 0.99382 0.97055 1.02330 0.90258 0.89091 0.87542 0.89603 0.93297 0.87741 0.91059 0.82797 0.83130 0.80929 0.82121 0.70431 0.87069 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.77 10.85 21.83 0.24 -41.54 16 2 C 0.04 1.81 5.23 85.26 0.45 2.26 16 3 Si 0.98 37.71 29.58 68.60 2.03 39.73 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -26.60 9.06 23.46 0.21 -26.39 16 8 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 9 C 0.08 4.35 5.56 -21.29 -0.12 4.23 16 10 C -0.24 -11.60 9.80 22.73 0.22 -11.38 16 11 C -0.07 -2.92 9.67 22.22 0.21 -2.71 16 12 C -0.20 -7.56 4.35 -19.68 -0.09 -7.64 16 13 C 0.11 3.40 4.53 85.56 0.39 3.79 16 14 N -0.54 -13.83 4.31 -881.43 -3.80 -17.63 16 15 C 0.05 1.34 4.95 86.44 0.43 1.77 16 16 C -0.59 -12.19 6.58 72.04 0.47 -11.71 16 17 S 2.45 47.68 5.34 -56.49 -0.30 47.37 16 18 O -0.96 -23.67 18.10 -127.39 -2.31 -25.98 16 19 O -0.97 -24.90 18.11 -127.39 -2.31 -27.21 16 20 C -0.59 -9.08 5.83 72.04 0.42 -8.66 16 21 C 0.10 1.95 2.35 44.31 0.10 2.06 16 22 H 0.11 1.83 7.93 -2.39 -0.02 1.81 16 23 C 0.50 10.09 6.17 71.24 0.44 10.53 16 24 O -0.52 -13.97 15.72 21.94 0.34 -13.62 16 25 O -0.51 -6.90 13.42 -51.34 -0.69 -7.59 16 26 C -0.09 -3.79 7.51 22.22 0.17 -3.62 16 27 C -0.18 -8.93 8.67 22.73 0.20 -8.73 16 28 H 0.29 13.10 8.30 -92.70 -0.77 12.33 16 29 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.09 2.66 5.69 -2.39 -0.01 2.64 16 32 H 0.05 1.30 8.07 -2.38 -0.02 1.29 16 33 H 0.10 3.42 4.81 -2.39 -0.01 3.41 16 34 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 35 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.15 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.16 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.43 2.23 9.10 -74.06 -0.67 1.56 16 40 H 0.11 3.95 8.05 -2.91 -0.02 3.93 16 41 H 0.10 5.37 6.19 -2.91 -0.02 5.35 16 Total: -1.00 -71.82 349.63 -2.87 -74.70 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.41 Total: 27.97 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 3.51 Total: -56.21 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -3.56 Total: -59.16 kcal Atomic # 8 Polarization: -69.44 SS G_CDS: -4.96 Total: -74.40 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.30 Total: 47.37 kcal Total: -71.82 -2.87 -74.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571103179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.716 kcal (2) G-P(sol) polarization free energy of solvation -71.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds